LOCUS NC_007607 182726 bp DNA circular CON 03-APR-2025
DEFINITION Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence.
ACCESSION NC_007607
VERSION NC_007607.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02603600
Assembly: GCF_000012005.1
KEYWORDS RefSeq.
SOURCE Shigella dysenteriae Sd197
ORGANISM Shigella dysenteriae Sd197
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE 1 (bases 1 to 182726)
AUTHORS Yang,F., Yang,J., Zhang,X., Chen,L., Jiang,Y., Yan,Y., Tang,X.,
Wang,J., Xiong,Z., Dong,J., Xue,Y., Zhu,Y., Xu,X., Sun,L., Chen,S.,
Nie,H., Peng,J., Xu,J., Wang,Y., Yuan,Z., Wen,Y., Yao,Z., Shen,Y.,
Qiang,B., Hou,Y., Yu,J. and Jin,Q.
TITLE Genome dynamics and diversity of Shigella species, the etiologic
agents of bacillary dysentery
JOURNAL Nucleic Acids Res 33 (19), 6445-6458 (2005)
PUBMED 16275786
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 182726)
AUTHORS Yang,J., Chen,L. and Jin,Q.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2007) State Key Laboratory for Moleclular
Virology and Genetic Engineering, Microbial Genome Center of
Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
Beijing 100176, P.R.China
REMARK Protein update by submitter
REFERENCE 3 (bases 1 to 182726)
AUTHORS Yang,J., Chen,L. and Jin,Q.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2007) State Key Laboratory for Moleclular
Virology and Genetic Engineering, Microbial Genome Center of
Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
Beijing 100176, P.R.China
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 182726)
AUTHORS Jin,Q., Yang,F., Yang,J., Jiang,Y., Yan,Y., Chen,L., Zhang,X.,
Peng,J., Tang,X., Xiong,Z., Nie,H., Dong,J., Xue,Y., Xu,X., Zhu,Y.,
Shen,Y., Qiang,B. and Hou,Y.
TITLE Direct Submission
JOURNAL Submitted (29-OCT-2004) State Key Laboratory for Moleclular
Virology and Genetic Engineering, Microbial Genome Center of
Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
Beijing 100176, P. R. China
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP000035.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Name :: GCF_000012005.1-RS_2025_03_27
Annotation Date :: 03/27/2025 04:02:03
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 4,880
CDSs (total) :: 4,767
Genes (coding) :: 3,643
CDSs (with protein) :: 3,643
Genes (RNA) :: 113
rRNAs :: 8, 7, 7 (5S, 16S, 23S)
complete rRNAs :: 8, 7, 7 (5S, 16S, 23S)
tRNAs :: 84
ncRNAs :: 7
Pseudo Genes (total) :: 1,124
CDSs (without protein) :: 1,124
Pseudo Genes (ambiguous residues) :: 0 of 1,124
Pseudo Genes (frameshifted) :: 378 of 1,124
Pseudo Genes (incomplete) :: 716 of 1,124
Pseudo Genes (internal stop) :: 255 of 1,124
Pseudo Genes (multiple problems) :: 201 of 1,124
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..182726
/organism="Shigella dysenteriae Sd197"
/mol_type="genomic DNA"
/strain="Sd197"
/serotype="1"
/db_xref="taxon:300267"
/plasmid="pSD1_197"
gene complement(191..>437)
/locus_tag="SDY_RS23105"
/old_locus_tag="SDY_P002"
/pseudo
CDS complement(191..>437)
/locus_tag="SDY_RS23105"
/old_locus_tag="SDY_P002"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004976766.1"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing N-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene <672..>800
/locus_tag="SDY_RS23115"
/pseudo
CDS <672..>800
/locus_tag="SDY_RS23115"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_309413.1"
/note="internal stop; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DUF3440 domain-containing protein"
gene 1050..1916
/gene="ospB"
/locus_tag="SDY_RS23120"
/old_locus_tag="SDY_P003"
CDS 1050..1916
/gene="ospB"
/locus_tag="SDY_RS23120"
/old_locus_tag="SDY_P003"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858136.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type 3 secretion system effector OspB"
/protein_id="WP_001046940.1"
/translation="MNLDGVRPYCRIVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
VVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKDFNNAPAESLSCILNSLPFFKEKES
LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
QKKTFIINKELD"
gene 2244..2984
/gene="phoN2"
/locus_tag="SDY_RS23125"
/old_locus_tag="SDY_P004"
CDS 2244..2984
/gene="phoN2"
/locus_tag="SDY_RS23125"
/old_locus_tag="SDY_P004"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858137.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="PAP2 family phosphatase PhoN2"
/protein_id="WP_000850660.1"
/translation="MKTKNFLLFCIATNMIFIPSANALKAEGFLTQQTSPDSLSILPP
PPAEDSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDEKMAITGSYPSGHA
SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
NTPEFTKSLSEAKKEFEELNTPTNELTP"
gene complement(3325..>4304)
/locus_tag="SDY_RS23130"
/pseudo
CDS complement(3325..>4304)
/locus_tag="SDY_RS23130"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858248.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="T3SS effector OspC family protein"
gene 4364..5058
/locus_tag="SDY_RS23135"
CDS join(4364..4610,4610..5058)
/locus_tag="SDY_RS23135"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
/protein_id="WP_134801664.1"
/translation="MASVNIHCPRCQSAQVYRHGHNPKGHDRFRCRDCHRVFQLTYTY
EACKPGIKELITEMAFNGAGVRDTARTLKIGINTVIRTFKKLTPKRITSSPVAHADVA
LICELDEQWSFVGSKARQHWLWYAYNTKTGGVLAYTFGPRTDETCRELLALLTPFNIG
MITSDDWGSYGREVTKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHE
KVIGTFIEKHMFY"
gene complement(<5073..5147)
/locus_tag="SDY_RS25770"
/pseudo
CDS complement(<5073..5147)
/locus_tag="SDY_RS25770"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858196.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(<5514..>6035)
/locus_tag="SDY_RS23140"
/old_locus_tag="SDY_P007"
/pseudo
CDS complement(<5514..>6035)
/locus_tag="SDY_RS23140"
/old_locus_tag="SDY_P007"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012904571.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family transposase zinc-finger binding
domain-containing protein"
gene complement(<6049..6734)
/locus_tag="SDY_RS24515"
/pseudo
CDS complement(<6049..6734)
/locus_tag="SDY_RS24515"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611997.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3-like element ISSfl11 family transposase"
gene <7073..>7264
/locus_tag="SDY_RS25255"
/pseudo
CDS <7073..>7264
/locus_tag="SDY_RS25255"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000233446.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(7424..9133)
/locus_tag="SDY_RS23155"
/old_locus_tag="SDY_P010"
CDS complement(7424..9133)
/locus_tag="SDY_RS23155"
/old_locus_tag="SDY_P010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858142.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ShET2/EspL2 family type III secretion system
effector toxin"
/protein_id="WP_024263012.1"
/translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
IQFKNKTAPYFSEKRNVKVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGCSDIIQVYGKILNMCNLSQETILSL
LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
TNKDGIPGVFVSVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKIKKTFIEIINRFN
HFL"
gene complement(9498..10726)
/locus_tag="SDY_RS23160"
/old_locus_tag="SDY_P011"
CDS complement(join(9498..10411,10411..10726))
/locus_tag="SDY_RS23160"
/old_locus_tag="SDY_P011"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558215.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3-like element IS2 family transposase"
/protein_id="WP_164833015.1"
/translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS
QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE
YGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDV
LLRIHHVIGELPTYGYRRVWALLRRQAELNGMPAINAKRVYRIMRQNALLLERKPAVP
PSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFN
SETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRS
PESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPRGY
LRQRACNGLSDNRCLEI"
gene complement(10901..11620)
/locus_tag="SDY_RS23165"
/old_locus_tag="SDY_P013"
CDS complement(10901..11620)
/locus_tag="SDY_RS23165"
/old_locus_tag="SDY_P013"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858143.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector
phosphothreonine lyase"
/protein_id="WP_001121864.1"
/translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
QYPAYYFKVASNVPNYSDICQFFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
NGSERQEQMLREEPFYRLMIE"
gene complement(11826..>12389)
/locus_tag="SDY_RS23170"
/old_locus_tag="SDY_P014"
/pseudo
CDS complement(11826..>12389)
/locus_tag="SDY_RS23170"
/old_locus_tag="SDY_P014"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000343760.1"
/note="internal stop; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene <12400..12631
/locus_tag="SDY_RS23175"
/pseudo
CDS <12400..12631
/locus_tag="SDY_RS23175"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611146.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene complement(12740..13318)
/locus_tag="SDY_RS23180"
/old_locus_tag="SDY_P015"
CDS complement(12740..13318)
/locus_tag="SDY_RS23180"
/old_locus_tag="SDY_P015"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858147.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000868555.1"
/translation="MKVSFKPLGYIFHDIYNKKHTIDEFNDVVRKAVLSGKINELNAC
HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
VSFVNREGKICHTAYVKSSDNSMAYYHANGSSIDKYITDMCGLICMRHIDSTGIIFYM
LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
gene complement(13372..>13630)
/locus_tag="SDY_RS25260"
/pseudo
CDS complement(13372..>13630)
/locus_tag="SDY_RS25260"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611434.1"
/GO_process="GO:0015074 - DNA integration [Evidence IEA]"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing N-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="integrase core domain-containing protein"
gene complement(13744..>13990)
/locus_tag="SDY_RS24520"
/pseudo
CDS complement(13744..>13990)
/locus_tag="SDY_RS24520"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000544830.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
gene complement(14168..>14597)
/locus_tag="SDY_RS23190"
/old_locus_tag="SDY_P018"
/pseudo
CDS complement(14168..>14597)
/locus_tag="SDY_RS23190"
/old_locus_tag="SDY_P018"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013747467.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing N-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene 14675..14962
/locus_tag="SDY_RS23195"
/old_locus_tag="SDY_P017"
CDS 14675..14962
/locus_tag="SDY_RS23195"
/old_locus_tag="SDY_P017"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001082153.1"
/translation="MNRTAFRAIHAVGADTGRNCRKFLPVSAGNFRIPFVINTYKPED
QFFVSGIHKERNIQVCATLNGIVKIIKAQNLSFFVTGSFKPSGLFPPAPQK"
gene 14993..15640
/gene="tnpA"
/locus_tag="SDY_RS23200"
/pseudo
CDS 14993..15640
/gene="tnpA"
/locus_tag="SDY_RS23200"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001355812.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="internal stop; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66-like element accessory protein TnpA"
gene 15640..15987
/gene="tnpB"
/locus_tag="SDY_RS23205"
/old_locus_tag="SDY_P020"
CDS 15640..15987
/gene="tnpB"
/locus_tag="SDY_RS23205"
/old_locus_tag="SDY_P020"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858152.1"
/note="TnpB, as the term is used for proteins encoded by
IS66 family insertion elements, is considered an accessory
protein, since TnpC, encoded by a neighboring gene, is a
DDE family transposase; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS66 family insertion sequence element accessory
protein TnpB"
/protein_id="WP_000622997.1"
/translation="MISFPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLF
IFRGRRSDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGIDW
KHPKRTERAGIRI"
gene <16112..17507
/gene="tnpC"
/locus_tag="SDY_RS23210"
/old_locus_tag="SDY_P021"
/pseudo
CDS <16112..17507
/gene="tnpC"
/locus_tag="SDY_RS23210"
/old_locus_tag="SDY_P021"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477168.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family transposase"
gene 17988..>18283
/locus_tag="SDY_RS23220"
/old_locus_tag="SDY_P022"
/pseudo
CDS 17988..>18283
/locus_tag="SDY_RS23220"
/old_locus_tag="SDY_P022"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015869530.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene <18368..18505
/locus_tag="SDY_RS23225"
/pseudo
CDS <18368..18505
/locus_tag="SDY_RS23225"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011787828.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS630 family transposase"
gene 18877..19554
/gene="ospD1"
/locus_tag="SDY_RS23230"
/old_locus_tag="SDY_P023"
CDS 18877..19554
/gene="ospD1"
/locus_tag="SDY_RS23230"
/old_locus_tag="SDY_P023"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858155.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type 3 secretion system effector/anti-activator
OspD1"
/protein_id="WP_011379050.1"
/translation="MSINNYGLHPANNKNMHLIIGSNTANENKGIRSNIINVTNSAIS
HAINEEKSGGGYSGVFFRKLAKIQSISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
LLDVRDNEGLPGLFLAAGRGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
DKIQELF"
gene <19878..19988
/locus_tag="SDY_RS25265"
/pseudo
CDS <19878..19988
/locus_tag="SDY_RS25265"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477168.1"
/GO_process="GO:0015074 - DNA integration [Evidence IEA]"
/note="internal stop; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene 20066..20380
/locus_tag="SDY_RS23240"
CDS 20066..20380
/locus_tag="SDY_RS23240"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858156.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011114726.1"
/translation="MLQRQRGKVGFAQLPVDFVAIEPDSVQGVGKRANLTNRCFIIRI
NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
RP"
gene 20662..21228
/gene="ipgB2"
/locus_tag="SDY_RS23245"
/old_locus_tag="SDY_P025"
CDS 20662..21228
/gene="ipgB2"
/locus_tag="SDY_RS23245"
/old_locus_tag="SDY_P025"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858157.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion effector IpgB2"
/protein_id="WP_024263014.1"
/translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSREIGDNLRKQIFKQV
EKDYRISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVVNLISDQF
FEKNVQYIDLKKLRGNMSDYITNLESPF"
gene complement(21490..>21612)
/locus_tag="SDY_RS24670"
/pseudo
CDS complement(21490..>21612)
/locus_tag="SDY_RS24670"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012904571.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase domain-containing protein"
gene 21800..22965
/locus_tag="SDY_RS23260"
/old_locus_tag="SDY_P027"
CDS join(21800..22061,22061..22965)
/locus_tag="SDY_RS23260"
/old_locus_tag="SDY_P027"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477168.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3-like element IS3H family transposase"
/protein_id="WP_134801821.1"
/translation="MTKTVSTSKKTRKQHSPEFCSEALKLAERIGVAAAARELSLYES
QLYAWRSKLQQQMTSSERESELAAENARLKRQLAEQAEELAILPKGRDILCEAPEMKY
VFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTGISPRQQFCQHCDSVVLAAAFTRS
KQRYGAPRLTDELRAQGYHFNVKTVAASLRRQGLRAKGSRKFSPVSYRAHGLPVSENL
LEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVIGWSMSPRLTAQLACDA
LQMALWRRKRPRNVIVHSDRGSQYCSADYQALLKWHNLRGSMSAKGCCYDNACVESFF
HSLKVECLHGEHFISREIMWATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA"
gene 23305..>23666
/locus_tag="SDY_RS23265"
/old_locus_tag="SDY_P028"
/pseudo
CDS 23305..>23666
/locus_tag="SDY_RS23265"
/old_locus_tag="SDY_P028"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene 23753..24763
/gene="istA"
/locus_tag="SDY_RS23270"
/old_locus_tag="SDY_P029"
/pseudo
CDS 23753..24763
/gene="istA"
/locus_tag="SDY_RS23270"
/old_locus_tag="SDY_P029"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000627495.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS21 family transposase"
gene 24760..25541
/gene="istB"
/locus_tag="SDY_RS23275"
/old_locus_tag="SDY_P030"
/pseudo
CDS 24760..25541
/gene="istB"
/locus_tag="SDY_RS23275"
/old_locus_tag="SDY_P030"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858162.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS21-like element IS100kyp family helper ATPase
IstB"
gene <25605..25946
/locus_tag="SDY_RS23280"
/pseudo
CDS <25605..25946
/locus_tag="SDY_RS23280"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene <25960..>26094
/locus_tag="SDY_RS25270"
/pseudo
CDS <25960..>26094
/locus_tag="SDY_RS25270"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000080195.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene 26268..27467
/locus_tag="SDY_RS23285"
/old_locus_tag="SDY_P031"
CDS 26268..27467
/locus_tag="SDY_RS23285"
/old_locus_tag="SDY_P031"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858164.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="AAA family ATPase"
/protein_id="WP_000200286.1"
/translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEAFAKAVFDRI
EFIRANY"
gene 27467..28447
/locus_tag="SDY_RS23290"
/old_locus_tag="SDY_P032"
CDS 27467..28447
/locus_tag="SDY_RS23290"
/old_locus_tag="SDY_P032"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858165.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParB family protein"
/protein_id="WP_000431558.1"
/translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
gene 28703..29188
/locus_tag="SDY_RS23295"
/old_locus_tag="SDY_P033"
CDS 28703..29188
/locus_tag="SDY_RS23295"
/old_locus_tag="SDY_P033"
/inference="COORDINATES: protein motif:HMM:NF033542.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS110 family transposase"
/protein_id="WP_000003223.1"
/translation="MSEQKITGIDLAKTNFYLFSINAHGKPAGKTKLSRNQLLNWLVQ
QPKMTVAMEAGGASHYWAREIRKLDHDVILLPAQHVKAYQRCQKNDYNDAQAIAEACQ
HGTIRPVPIKTLEQQDVQTFLNMRRLVSMERTQLINHIRGLLAEYGIVFSKGAAELRQ
K"
gene complement(29215..>29394)
/locus_tag="SDY_RS23300"
/pseudo
CDS complement(29215..>29394)
/locus_tag="SDY_RS23300"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012904571.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase domain-containing protein"
gene complement(29477..>30619)
/gene="ltrA"
/locus_tag="SDY_RS23305"
/old_locus_tag="SDY_P034"
/pseudo
CDS complement(29477..>30619)
/gene="ltrA"
/locus_tag="SDY_RS23305"
/old_locus_tag="SDY_P034"
/inference="COORDINATES: protein motif:HMM:TIGR04416.1"
/GO_function="GO:0003964 - RNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0000373 - Group II intron splicing
[Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="group II intron reverse transcriptase/maturase"
gene 30526..30863
/locus_tag="SDY_RS25275"
/pseudo
CDS 30526..30863
/locus_tag="SDY_RS25275"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858170.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(<31180..>31359)
/locus_tag="SDY_RS23315"
/pseudo
CDS complement(<31180..>31359)
/locus_tag="SDY_RS23315"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012904571.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family transposase"
gene complement(31384..32605)
/locus_tag="SDY_RS23320"
/pseudo
CDS complement(31384..32605)
/locus_tag="SDY_RS23320"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611570.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; internal stop; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
misc_feature complement(32208..32324)
/locus_tag="SDY_RS23320"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF01497"
/inference="COORDINATES: profile:INFERNAL:1.1.5"
/note="AL1L pseudoknot; Derived by automated computational
analysis using gene prediction method: cmsearch."
/pseudo
/db_xref="RFAM:RF01497"
gene complement(32657..34381)
/gene="ipaH4.5"
/locus_tag="SDY_RS23325"
/old_locus_tag="SDY_P037"
CDS complement(32657..34381)
/gene="ipaH4.5"
/locus_tag="SDY_RS23325"
/old_locus_tag="SDY_P037"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858212.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS effector E3 ubiquitin-protein ligase
IpaH4.5"
/protein_id="WP_011379044.1"
/translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQRLKYLKVGENQLRRL
SRLPQELLALDVSNNLLTSLPENIITLPICTNVNISGNPLSTRVLQSLQRLTSSPDYH
GPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDISQIWHAFEHEEHANTFSAFLDR
LSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRK
TLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTM
LAEKLQLSTAVKEMRFYGVSGVTANDLRTAEATVRSREENEFTDWFSLWGPWHAVLKR
TEADRWAQAEEQKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYR
QLTDEVLA"
gene complement(34809..36506)
/gene="ipaH7.8"
/locus_tag="SDY_RS23330"
/old_locus_tag="SDY_P038"
CDS complement(34809..36506)
/gene="ipaH7.8"
/locus_tag="SDY_RS23330"
/old_locus_tag="SDY_P038"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858211.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS effector E3 ubiquitin-protein ligase
IpaH7.8"
/protein_id="WP_011379043.1"
/translation="MFSVNNTHSSVSCSPSINSNLTSNEHYLRILTEWEKNSSPGEER
GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPKHISALIVENNKLTSLPKLPAFLKEL
NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
SFSQLDSSYRINISGNPLSTRVLQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLAD
AVTAWFPENKQSDISQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLE
KLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL
GREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGV
TANDLRTAEATVRSREENEFADWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYS
QRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSRLHHS"
gene <36836..>37015
/locus_tag="SDY_RS23335"
/pseudo
CDS <36836..>37015
/locus_tag="SDY_RS23335"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611684.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family transposase"
gene complement(37032..>37246)
/locus_tag="SDY_RS23340"
/pseudo
CDS complement(37032..>37246)
/locus_tag="SDY_RS23340"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_139821375.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene complement(37326..>38232)
/locus_tag="SDY_RS23345"
/pseudo
CDS complement(37326..>38232)
/locus_tag="SDY_RS23345"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611998.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(38236..38933)
/locus_tag="SDY_RS23350"
CDS complement(join(38236..38684,38684..38933))
/locus_tag="SDY_RS23350"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001743396.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
/protein_id="WP_238386296.1"
/translation="MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFT
YTASQPGTHQKIIDMAMNGVGCRATARIMGVSLNTILRHFKKLRPQSVTSRIQPGSNV
IVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLLPFDV
VIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKALSFSKSVELH
DKVIGHYLNIKHYQ"
gene 39246..40090
/locus_tag="SDY_RS23355"
CDS join(39246..39588,39588..40090)
/locus_tag="SDY_RS23355"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611198.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS5-like element ISSfl7 family transposase"
/protein_id="WP_094096542.1"
/translation="MARYDLPDEAWTIIKPLLPPEPATPRAGRPWAEHRKIINGMFWV
LCSGAPWRDLPERYGAWKTVYNRFNRWSKSGVINIIFNRLLSLLDANGFIDWSATALD
GSNIRALKCAAGGSKKHPDIDGDNGPGRSRGGFGTKIHLATDGSGLPLNIVLSPGQAH
ESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSGRALRNELKNNGIKAVIPRKSNE
KMASDGRAQLDRDAYRNRNVVERCFGRLKEYRRIATRYDKTARNYLAMVKLGCIRLFY
QRLRN"
gene 40229..>40384
/locus_tag="SDY_RS23360"
/old_locus_tag="SDY_P044"
/pseudo
CDS 40229..>40384
/locus_tag="SDY_RS23360"
/old_locus_tag="SDY_P044"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000343613.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS256 family transposase"
gene complement(40414..42141)
/gene="ipaH1.4"
/locus_tag="SDY_RS23365"
/old_locus_tag="SDY_P045"
CDS complement(40414..42141)
/gene="ipaH1.4"
/locus_tag="SDY_RS23365"
/old_locus_tag="SDY_P045"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858398.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS effector E3 ubiquitin-protein ligase
IpaH1.4"
/protein_id="WP_024263018.1"
/translation="MIKSTNIQAIGSGIMHQINNIYSLTPFSSPMELTPSCNEFYLKA
WSEWEKNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPFLPENLTHLRVHN
NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLALANNFIEQLPELPFSMNRAVL
MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPRIFFSMGNSA
TISAPEHSLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTS
GFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGL
FDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAV
KEMRFYGVSGVTANDLRTAEATVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEE
QKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRL
SENGSNHIA"
gene complement(42529..42795)
/gene="ospE2"
/locus_tag="SDY_RS23370"
/old_locus_tag="SDY_P046"
CDS complement(42529..42795)
/gene="ospE2"
/locus_tag="SDY_RS23370"
/old_locus_tag="SDY_P046"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_001449236.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type 3 secretion system effector OspE2"
/protein_id="WP_000957712.1"
/translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
IYELQIPAANRTKTLKFTATEMQWLTKINEAGIDEKQSQRYSDF"
gene complement(42903..>43084)
/locus_tag="SDY_RS25280"
/pseudo
CDS complement(42903..>43084)
/locus_tag="SDY_RS25280"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene 43399..>43461
/locus_tag="SDY_RS25775"
/pseudo
CDS 43399..>43461
/locus_tag="SDY_RS25775"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001608690.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene 43633..>44069
/locus_tag="SDY_RS23385"
/old_locus_tag="SDY_P048"
/pseudo
CDS 43633..>44069
/locus_tag="SDY_RS23385"
/old_locus_tag="SDY_P048"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611998.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(44084..44778)
/locus_tag="SDY_RS23390"
CDS complement(join(44084..44532,44532..44778))
/locus_tag="SDY_RS23390"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1-like element IS1N family transposase"
/protein_id="WP_134802015.1"
/translation="MASVNIHCPRCQSAQVYRHGQNPKGHDRFRCRDCHRVFQLTYTY
EARKPGIKELITEMAFNGAGVRDTARTLKIGINTVIRTFKKLTPKRITSSPVAHADVA
LICELDEQWSFVGSKARQHWLWYAYNTKTGGGLAYTFGPRTDETCRELLALLTPFNIR
MITSDDWGSYGREVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHE
KVIGTFIEKHMFY"
gene complement(44973..46182)
/locus_tag="SDY_RS23395"
/pseudo
CDS complement(44973..46182)
/locus_tag="SDY_RS23395"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611570.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; internal stop; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
misc_feature complement(45785..45901)
/locus_tag="SDY_RS23395"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF01497"
/inference="COORDINATES: profile:INFERNAL:1.1.5"
/note="AL1L pseudoknot; Derived by automated computational
analysis using gene prediction method: cmsearch."
/pseudo
/db_xref="RFAM:RF01497"
gene complement(<46238..46786)
/locus_tag="SDY_RS23400"
/pseudo
CDS complement(<46238..46786)
/locus_tag="SDY_RS23400"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000878026.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="internal stop; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS110 family transposase"
gene 47797..49209
/gene="ospC1"
/locus_tag="SDY_RS23405"
/old_locus_tag="SDY_P055"
CDS 47797..49209
/gene="ospC1"
/locus_tag="SDY_RS23405"
/old_locus_tag="SDY_P055"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858227.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type 3 secretion system effector OspC1"
/protein_id="WP_011379035.1"
/translation="MNISEILNSSNTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
KCLKDSANIIKDFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
LSKHYISEIRKKLHPLSAKELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
GICTNRNTYADDIKKIANHDFVFFGVEISSHQKKHPLNTKHHTVDFGANAYMIEHSSP
YGYMTLTDHFDNVIPFAQYHEHQSFLDKFSEVNEEVSRYVHGSKGIIDVPIFNTKDMK
LGLGLYLIDFIRKSEDQSFKEFCYEKNLSPVDLDRIINFVFQPEYHIPRMVSTENFKK
VKIREISLEEAVTASNYEEINKQVTNKKIALQALFFSITNKKEDVALYILSNFEITKQ
DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
NAEMIKLLLKYGATSDNKYI"
gene complement(<49305..49442)
/locus_tag="SDY_RS23410"
/pseudo
CDS complement(<49305..49442)
/locus_tag="SDY_RS23410"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611146.1"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene 49518..51215
/gene="ospD3"
/locus_tag="SDY_RS23415"
/old_locus_tag="SDY_P056"
CDS 49518..51215
/gene="ospD3"
/locus_tag="SDY_RS23415"
/old_locus_tag="SDY_P056"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858226.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector OspD3"
/protein_id="WP_005015229.1"
/translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
SFLLNLNCQVTDLSGRLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
EKAINVPGIIYFVENGSWGDIIYHIFNEMIFHAEKNRALEISTSNHNMALGLKIKETK
NGGRFVIQLYDPNHTATHLRAEFNNFNLDKIKKLTVDNFLDEKHQECYGLISDGMSIF
VDRHTPTSMSSIIRWPNNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
ALQNGHAETIKTYGGLLKKRAINIEYNKLKNLLTAYYYDEVHRQTPGLMFALQNGHAD
AIRAYGELILSLPFLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
LNLDKKAELLAAKDSNGLSGLFVALHNGRVETIIAYGKILHTADLTPHQASKLLAAEG
PNGVSGLIIAFQNRNFEAIKTYMEIIKDENITPEEIAEHLDKKNGSDFLEIMSNIKS"
gene complement(51512..52206)
/locus_tag="SDY_RS23420"
CDS complement(join(51512..51960,51960..52206))
/locus_tag="SDY_RS23420"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1-like element IS1N family transposase"
/protein_id="WP_087786203.1"
/translation="MASVNIHCPRCQSAQVYRHGQNPKGHDRFRCRDCHRVFQLTYTY
EARKPGIKELITEMAFNGAGVRDTARTLKIGINTVIRTFKKLTPKRITSSPVAHADVA
LICELDEQWSFVGSKARQHWLWYAYNTKTGGVLAYTFGPRTDETCRELLALLTPFNIG
MITSDDWGSYGREVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHE
KVIGTFIEKHMFY"
gene 52421..>53137
/locus_tag="SDY_RS23425"
/pseudo
CDS 52421..>53137
/locus_tag="SDY_RS23425"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015869530.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS256 family transposase"
gene 53106..>53447
/locus_tag="SDY_RS23430"
/old_locus_tag="SDY_P061"
/pseudo
CDS 53106..>53447
/locus_tag="SDY_RS23430"
/old_locus_tag="SDY_P061"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000244358.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/note="internal stop; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase DNA-binding-containing protein"
gene 53488..>53661
/locus_tag="SDY_RS23435"
/pseudo
CDS 53488..>53661
/locus_tag="SDY_RS23435"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001608690.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene 53721..54934
/locus_tag="SDY_RS23440"
/old_locus_tag="SDY_P062"
/pseudo
CDS 53721..54934
/locus_tag="SDY_RS23440"
/old_locus_tag="SDY_P062"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611570.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; internal stop; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
misc_feature 54002..54118
/locus_tag="SDY_RS23440"
/old_locus_tag="SDY_P062"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF01497"
/inference="COORDINATES: profile:INFERNAL:1.1.5"
/note="AL1L pseudoknot; Derived by automated computational
analysis using gene prediction method: cmsearch."
/pseudo
/db_xref="RFAM:RF01497"
gene 55275..56927
/gene="ushA"
/locus_tag="SDY_RS23445"
/old_locus_tag="SDY_P064"
CDS 55275..56927
/gene="ushA"
/locus_tag="SDY_RS23445"
/old_locus_tag="SDY_P064"
/EC_number="3.1.3.5"
/EC_number="3.6.1.45"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858318.2"
/GO_function="GO:0000166 - nucleotide binding [Evidence
IEA]"
/GO_function="GO:0016787 - hydrolase activity [Evidence
IEA]"
/GO_function="GO:0046872 - metal ion binding [Evidence
IEA]"
/GO_process="GO:0009166 - nucleotide catabolic process
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="bifunctional UDP-sugar hydrolase/5'-nucleotidase
UshA"
/protein_id="WP_000612524.1"
/translation="MIPLKKNITLIMFTLSLLTGNPAIAYETDKVYKITVLHTNDHHG
HFWRNNHGEYGLSSQKTLVDNIRQKVINNGGSVLLLSGGDINTGVPESDLQKAEPDIR
GMNLIGYDAMAVGNHEFDNPLNILRQQEKWATFPFLSANIYQKSTGRRLFSPWKIFIR
QNLKIAVIGLTTDDTAKTGNSEYFTDIEFRQPAAEARSVIDELNQQEKPDIIIAATHM
GHYDNGESGSNAPGDVEMARSLPTGSLAMIVGGHSQAPVCMASDNKKQWNYIPGTTCV
PDKQNGIWIVQAHEWGKYVGQADFEFCNGTMKLVNYQLHPVNLKMRITREDGKTEFSF
YTPEITEDPQMLSLLTPFQNKGKAQLDVKVGVVNGRLEGDRSKVRFVQTSMGHLILSA
LTERIDADFAVVSGGEIRDSIESGNITYKDILKVQPFGNTVVSIDLTGKEVADYLATV
AQMKPDSGAYPQFLNTSFVVKKGKIEMLKIKGKSVDLNKKYRMTTFSFNATGGDGYPR
IDNRPGYINTGFIDAEVLIEYIREHSPLDAASYEPKGEVSWQ"
gene 56996..57690
/locus_tag="SDY_RS23450"
CDS join(56996..57242,57242..57690)
/locus_tag="SDY_RS23450"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1-like element IS1N family transposase"
/protein_id="WP_134801584.1"
/translation="MASVNIHCPRCQSAQVYRHGQNPKGHDRFRCRDCHRVFQLTYTY
EARKPGIKELITEMAFNGAGVCDTARTLKIGINTVIRTFKKLTPKRITSSPVAHADVA
LICELDEQWSFVGSKARQHWLWYAYNTKTGGVLAYTFGPRTDETCRELLALLTPFNIG
MITSDDWGSYGREVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHE
KVIGTFIEKHMFY"
gene 58105..58854
/gene="phoC"
/locus_tag="SDY_RS23455"
/old_locus_tag="SDY_P067"
CDS 58105..58854
/gene="phoC"
/locus_tag="SDY_RS23455"
/old_locus_tag="SDY_P067"
/EC_number="3.1.3.2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858323.1"
/GO_function="GO:0003993 - acid phosphatase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="acid phosphatase PhoC"
/protein_id="WP_000828660.1"
/translation="MKRQLFTLSIVGVFSLNTFASFPPGNDVTTKPDLYYLTNDNAID
SLALLPPPPQIGSIAFLNDQAMYEKGLLLRNTERGKLAAEDANLSSGGVANVFSAAFG
SPITAKDSPELHKLLTNMIEDAGDLATRSAKEYYMRIRPFAFYGVSTCNTKEQDTLSR
NGSYPSGHTSIGWATALVLSEINPARQDTILKRGYELGDSRVICGYHWQSDVDAARIV
GSAIVATLHSNPVFQAQLQKAKDEFANNQKK"
gene complement(58909..>59013)
/locus_tag="SDY_RS25290"
/pseudo
CDS complement(58909..>59013)
/locus_tag="SDY_RS25290"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_418698.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(59024..59868)
/locus_tag="SDY_RS23460"
/pseudo
CDS complement(59024..59868)
/locus_tag="SDY_RS23460"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611198.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; internal stop; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS5 family transposase"
gene 60293..61747
/gene="ospC2"
/locus_tag="SDY_RS23465"
/old_locus_tag="SDY_P070"
CDS 60293..61747
/gene="ospC2"
/locus_tag="SDY_RS23465"
/old_locus_tag="SDY_P070"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858196.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type 3 secretion system effector OspC2"
/protein_id="WP_000701102.1"
/translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
EHLDKVSRHYLSEIIQKTHPLSSDERHFLSIIINSDFNFRHQSNANLSNNTLNIKSFD
KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQPEYHIPRMLS
TDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSK
FNFTKQDVAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFINNGLVDVNKRFQKAN
SGDTMLDNAMKSKDSKTIDFLLKNGAVSGKRFGR"
gene complement(61897..62741)
/locus_tag="SDY_RS23470"
/pseudo
CDS complement(61897..62741)
/locus_tag="SDY_RS23470"
/inference="COORDINATES: protein motif:HMM:NF033580.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS5 family transposase"
gene complement(62787..63167)
/locus_tag="SDY_RS23475"
/old_locus_tag="SDY_P073"
CDS complement(62787..63167)
/locus_tag="SDY_RS23475"
/old_locus_tag="SDY_P073"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858326.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system RelB/DinJ family
antitoxin"
/protein_id="WP_005015412.1"
/translation="MTMATINARIDDDIKNQADEVLKLMNISQTQAIAAFYQYITEQK
KLPFVITSIVKTPHDLLRESTDMLAEALAVISNLQVWTEQQDGIGKAKLMEYYRRLDA
LYCCAKEKIGLLSDNRDAELGCVP"
gene complement(63347..63742)
/locus_tag="SDY_RS23480"
/old_locus_tag="SDY_P074"
CDS complement(63347..63742)
/locus_tag="SDY_RS23480"
/old_locus_tag="SDY_P074"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858327.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid partitioning/stability family protein"
/protein_id="WP_000445931.1"
/translation="MESSDPKKRKKVVAYLHPALYPQDNLTQQTIDSLPVQMRGDFYR
QSLICGAALYSVDPRLLTLISGFFSEKITAENLVKLIEQTTGYTSTSIDISVLKNIIE
ASSENKSESITSKDDFEEQTRRNLSMLKK"
gene complement(63742..64701)
/locus_tag="SDY_RS23485"
/old_locus_tag="SDY_P075"
CDS complement(63742..64701)
/locus_tag="SDY_RS23485"
/old_locus_tag="SDY_P075"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858328.1"
/GO_function="GO:0000166 - nucleotide binding [Evidence
IEA]"
/GO_process="GO:0030541 - plasmid partitioning [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid segregation protein ParM"
/protein_id="WP_000921950.1"
/translation="MLKVSCDDGSTNVKLAWLEDGEVRTSLSGNSFKEGWNPGLFNAG
KVYNYVVDEKKYTYDLGSTAVIGTTHVSYQYSTTNLLAIHHALLTSGLQPQDVELTVT
LPVTEFFDNDNQPNEERIERKKANVLREISLNKGETFKIKKVNVMPESLPAAFELLKK
DKVNKLERSLIIDLGGTTLDCGLILGAFEGISEIRGYSEIGTSRITHTVMNALTKAST
PCNYFIADELIKNRHDNEYLQTLINDVAEIKNISHVIDREVKSLAESIRQEISTFSGM
NRIYLTGGGAELIYPHIKQYFPNLKVNKVDEPQFALVKAMVHA"
gene 65116..>65463
/locus_tag="SDY_RS23490"
/old_locus_tag="SDY_P076"
/pseudo
CDS 65116..>65463
/locus_tag="SDY_RS23490"
/old_locus_tag="SDY_P076"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001134314.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DUF1281 domain-containing protein"
gene complement(65508..>66269)
/locus_tag="SDY_RS23495"
/old_locus_tag="SDY_P077"
/pseudo
CDS complement(65508..>66269)
/locus_tag="SDY_RS23495"
/old_locus_tag="SDY_P077"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611295.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3-like element IS600 family transposase"
gene complement(66288..66985)
/locus_tag="SDY_RS23500"
CDS complement(join(66288..66736,66736..66985))
/locus_tag="SDY_RS23500"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001743396.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
/protein_id="WP_237160596.1"
/translation="MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFT
YTASQPGTHQKIIDMAMNGVGCRATARIMGVSLNTILRHFKKLRPQSVTSRIQPGSNV
IVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPCDV
VIWMTDGWPLYESRLKGKLHIISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELH
DKVIGHYLNIKHYQ"
gene complement(<67041..67441)
/locus_tag="SDY_RS23505"
/old_locus_tag="SDY_P079"
/pseudo
CDS complement(<67041..67441)
/locus_tag="SDY_RS23505"
/old_locus_tag="SDY_P079"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611998.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(<67701..68234)
/locus_tag="SDY_RS23510"
/pseudo
CDS complement(<67701..68234)
/locus_tag="SDY_RS23510"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611134.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(68349..68987)
/gene="ospI"
/locus_tag="SDY_RS23515"
/old_locus_tag="SDY_P082"
CDS complement(68349..68987)
/gene="ospI"
/locus_tag="SDY_RS23515"
/old_locus_tag="SDY_P082"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858342.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector OspI"
/protein_id="WP_000607008.1"
/translation="MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSE
LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
gene complement(<69140..69615)
/locus_tag="SDY_RS23520"
/pseudo
CDS complement(<69140..69615)
/locus_tag="SDY_RS23520"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene <69951..>70181
/locus_tag="SDY_RS23525"
/old_locus_tag="SDY_P084"
/pseudo
CDS <69951..>70181
/locus_tag="SDY_RS23525"
/old_locus_tag="SDY_P084"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858162.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
gene complement(70236..>70445)
/locus_tag="SDY_RS23530"
/old_locus_tag="SDY_P085"
/pseudo
CDS complement(70236..>70445)
/locus_tag="SDY_RS23530"
/old_locus_tag="SDY_P085"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005160866.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="peptidoglycan-binding protein"
gene 71197..71481
/locus_tag="SDY_RS23540"
/old_locus_tag="SDY_P087"
CDS 71197..71481
/locus_tag="SDY_RS23540"
/old_locus_tag="SDY_P087"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052676.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="CopG family ribbon-helix-helix protein"
/protein_id="WP_001178088.1"
/translation="MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQA
LSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAWADSLSTDHPLPVPR"
gene 71481..71756
/locus_tag="SDY_RS23545"
/old_locus_tag="SDY_P088"
CDS 71481..71756
/locus_tag="SDY_RS23545"
/old_locus_tag="SDY_P088"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858351.1"
/GO_component="GO:0110001 - toxin-antitoxin complex
[Evidence IEA]"
/GO_function="GO:0090729 - toxin activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system RelE/ParE family
toxin"
/protein_id="WP_000421263.1"
/translation="MELKWTSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLT
HPRMGEQLFQFEPREVRRIFTGEYEIRYELTGQTIYVLRLWYTRENR"
gene complement(71888..72025)
/locus_tag="SDY_RS24530"
CDS complement(71888..72025)
/locus_tag="SDY_RS24530"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000766699.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000766699.1"
/translation="MKLIHGAYEKAAPIIKIGEFAMSGNNVSDGLFASPERDIAASHE
R"
gene complement(72117..72482)
/locus_tag="SDY_RS23555"
/old_locus_tag="SDY_P090"
CDS complement(72117..72482)
/locus_tag="SDY_RS23555"
/old_locus_tag="SDY_P090"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000361391.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid partitioning/stability family protein"
/protein_id="WP_000361391.1"
/translation="MDKRRTIAFKPNPDVNQTDKIVCNTLDSIPQGERSRLNRAALTA
DLALYRQDPRPPFLLCELLTKETTFSDIVNILRSLFPKEMVDFNSSTITQSSSQKEQK
SDEETQKNVMKLINQFNYY"
gene complement(72485..>73062)
/gene="parM"
/locus_tag="SDY_RS23560"
/old_locus_tag="SDY_P092"
/gene_synonym="stbA"
/pseudo
CDS complement(72485..>73062)
/gene="parM"
/locus_tag="SDY_RS23560"
/old_locus_tag="SDY_P092"
/gene_synonym="stbA"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000959884.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="plasmid segregation protein ParM"
gene <73061..74151
/gene="tnpC"
/locus_tag="SDY_RS23565"
/pseudo
CDS <73061..74151
/gene="tnpC"
/locus_tag="SDY_RS23565"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000354984.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing N-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family transposase"
gene complement(74527..75220)
/locus_tag="SDY_RS23570"
/pseudo
CDS complement(74527..75220)
/locus_tag="SDY_RS23570"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1-like element IS1N family transposase"
gene 75460..75678
/gene="ccdA"
/locus_tag="SDY_RS23575"
/old_locus_tag="SDY_P096"
CDS 75460..75678
/gene="ccdA"
/locus_tag="SDY_RS23575"
/old_locus_tag="SDY_P096"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858357.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system antitoxin CcdA"
/protein_id="WP_000813626.1"
/translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
QAENQQGMAEIARFIEMNGSFADENRDW"
gene 75680..75985
/gene="ccdB"
/locus_tag="SDY_RS23580"
/old_locus_tag="SDY_P097"
CDS 75680..75985
/gene="ccdB"
/locus_tag="SDY_RS23580"
/old_locus_tag="SDY_P097"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858358.3"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system toxin CcdB"
/protein_id="WP_001159860.1"
/translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
gene <76021..76116
/locus_tag="SDY_RS23585"
/pseudo
CDS <76021..76116
/locus_tag="SDY_RS23585"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012904571.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase domain-containing protein"
gene 76244..76938
/locus_tag="SDY_RS23590"
CDS join(76244..76490,76490..76938)
/locus_tag="SDY_RS23590"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1-like element IS1N family transposase"
/protein_id="WP_164925049.1"
/translation="MASVNIHCPRCQSAQVYRHGQNPKGHDRFRCRDCHRVFQLTYTY
EARKPGIKELITEMAFNGAGVRDTARTLKIGINTVIRTFKKLTPKRITSSPVAHADVA
LICELDEQWSFVGSKARQHWLWYAYNTKTGGVLAYTFGPRTDETCRELLALLTPFNIG
MITSDDWGSYGREVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFLRSVEIHE
KVIGTFIEKHMFY"
gene 77152..78789
/gene="ipaH9.8"
/locus_tag="SDY_RS23595"
/old_locus_tag="SDY_P099"
CDS 77152..78789
/gene="ipaH9.8"
/locus_tag="SDY_RS23595"
/old_locus_tag="SDY_P099"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858359.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS effector E3 ubiquitin-protein ligase
IpaH9.8"
/protein_id="WP_000936809.1"
/translation="MLPINNNFSLPQNSFYNTISGTYADYFSAWDKWEKQALPGEERD
EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
HALQALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQTWHA
FEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADAT
ESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRT
LHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEF
TDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAER
EAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS"
gene 78997..79266
/gene="yacA"
/locus_tag="SDY_RS23600"
/old_locus_tag="SDY_P100"
CDS 78997..79266
/gene="yacA"
/locus_tag="SDY_RS23600"
/old_locus_tag="SDY_P100"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015056448.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system antitoxin YacA"
/protein_id="WP_000079957.1"
/translation="MAQVNMSVRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQ
HNSWFRDQVAAGRQQLECGDVLPHDMVESSAAAWRDEMSRKIAGK"
gene 79266..>79435
/gene="yacB"
/locus_tag="SDY_RS24680"
/pseudo
CDS 79266..>79435
/gene="yacB"
/locus_tag="SDY_RS24680"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013009346.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system toxin YacB"
gene 79518..80108
/gene="ospG"
/locus_tag="SDY_RS23605"
/old_locus_tag="SDY_P101"
CDS 79518..80108
/gene="ospG"
/locus_tag="SDY_RS23605"
/old_locus_tag="SDY_P101"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858360.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector protein
kinase OspG"
/protein_id="WP_000705601.1"
/translation="MKITSTIIQTPFPFENNNSHAGIVTEPILGKLIGQGSTAEIFED
VNDSSALYKKYDLIGNQYNEILEMAWQESELFNAFYGDEASVVIQYGGDVYLRMLRVP
GTPLSDIDTADIPDNIESLYLQLICKLNELSIIHYDLNTGNMLYDKESESLFPIDFRN
IYAEYYAATKKDKEIIDRRLQMRTNDFYSLLNRKYL"
gene 80465..>80731
/locus_tag="SDY_RS24295"
/old_locus_tag="SDY_P102"
/pseudo
CDS 80465..>80731
/locus_tag="SDY_RS24295"
/old_locus_tag="SDY_P102"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000456749.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family insertion sequence element accessory
protein TnpB"
gene 80794..82140
/locus_tag="SDY_RS23610"
/old_locus_tag="SDY_P103"
CDS 80794..82140
/locus_tag="SDY_RS23610"
/old_locus_tag="SDY_P103"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_706148.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS4-like element IS4 family transposase"
/protein_id="WP_011379024.1"
/translation="MFPDSFMHIGQALDLVSRYDSLRNPLTSLGDYLAPELISRCLAE
SGTVTLRKRRLPLEMMVWCIVGMVLERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR
QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH
AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY
YSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGDHLVKLKTSPQARKKWPGLGN
EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR
LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM
TLQGASPGRIPELMRDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA"
gene complement(<82154..>82345)
/locus_tag="SDY_RS24535"
/old_locus_tag="SDY_P104"
/pseudo
CDS complement(<82154..>82345)
/locus_tag="SDY_RS24535"
/old_locus_tag="SDY_P104"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001743492.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family insertion sequence element accessory
protein TnpB"
gene <82343..>82667
/locus_tag="SDY_RS23615"
/pseudo
CDS <82343..>82667
/locus_tag="SDY_RS23615"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612087.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(82697..85609)
/locus_tag="SDY_RS23620"
/old_locus_tag="SDY_P106"
CDS complement(82697..85609)
/locus_tag="SDY_RS23620"
/old_locus_tag="SDY_P106"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858367.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="UvrD-helicase domain-containing protein"
/protein_id="WP_164925050.1"
/translation="MFSKAFLRKISMFFARRKPAAMKICLYHTLNPDTIPGYKKFAQA
IATDNFVQADVRKIDTNLYRARLSIRDRLLFSLYRYHGETICLVLEYIRNHAYNTSRF
LRRNVVIDEGRLQQQPVPDPVDIATEALTYINPSHGRFHRLDKMLSFDDDQQALYEHP
LPLVIVGSAGSGKTALVLEKMKQAAGDILYLSLSSFLVEKARTLYDASGEGSEVQNID
FLSLTEFLETLRIPEGREVTFSAFSDWLPRNRAIAALGAAHTLYEEFRGVIGAVASGN
GPLSREAYLSLGIRQSLYGMEDRPTVYVLFERYIAWLKQSHQYDSNLLSHQYLSLATP
RYDVIFVDEVQDMTPVQLQLVLKTLRHPGQFLLCGDANQIVHPSFFSWSSLKSLFFRQ
QQGNDTTVNILQANYRNGHHVTALANRLLRLKQVRFSAIDRESHHFVRSCGQAEGTIR
LLDDREETKQELNAKTSLSNRVAVIVMHPEQKAQARCWFSTPLVFSVQEVKGLEYETV
ILYNIVSAARQAFDDICEGLTPADLEGEARYSRPRDKQDRSAEIYKFFTNALYVALTR
ATHNVYLVEQQVEHPLWSLLALTHQEEPLNLQEEISSRDEWQKTAHLLEKQGKQEQAD
TIRSRILQTSEMPWQIITAEDARQWKQHILAGTADKTIQLQALEYSLIYSLFPLYNAL
YREDFKPTRQPRTKTLQLLELKYFRPYSMNNPVAVLRDIERYGVDHRSPFNLTPLMSA
ARAGNIALVQLLLERGADPLLTGNDGLAAYHQVLSAAVSTPRYAQQKSAQLYTLLKPE
SLSLQVEGRLIKLDNRLMAMFLVILMQALFHTHLGSALFFSEAFSAARLAECVVHLPE
ALLPERRKRRSYISSQLSQHEVNSKNPYGKKLFLRLNHGQYILNPGLKIRQGDVWRAV
YELQSPEDLGHDLQTYLQDMSPELVDMLGGKKGFYERSEKSVGYWVGGIRRAAQKA"
gene 86092..86934
/locus_tag="SDY_RS23630"
/old_locus_tag="SDY_P107"
CDS 86092..86934
/locus_tag="SDY_RS23630"
/old_locus_tag="SDY_P107"
/EC_number="3.-.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858368.1"
/GO_function="GO:0016787 - hydrolase activity [Evidence
IEA]"
/GO_function="GO:0016810 - hydrolase activity, acting on
carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
/GO_function="GO:0046872 - metal ion binding [Evidence
IEA]"
/GO_process="GO:0005975 - carbohydrate metabolic process
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase family protein"
/protein_id="WP_000931198.1"
/translation="MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQMKWLA
ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLIT
GFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELG
FYYLYTTERRMNAPAKGTTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPR
LPDD"
gene 86937..88025
/gene="capU"
/locus_tag="SDY_RS23635"
/old_locus_tag="SDY_P108"
CDS 86937..88025
/gene="capU"
/locus_tag="SDY_RS23635"
/old_locus_tag="SDY_P108"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858369.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="putative hexosyltransferase CapU"
/protein_id="WP_005015483.1"
/translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTW
KHPFRIIRQKTYLTRKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
WLIVGSGTPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
ARQAKQDIEERFDINKTALKILTLAKHK"
gene 88030..88980
/gene="virK"
/locus_tag="SDY_RS23640"
/old_locus_tag="SDY_P109"
CDS 88030..88980
/gene="virK"
/locus_tag="SDY_RS23640"
/old_locus_tag="SDY_P109"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858370.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="virulence factor VirK"
/protein_id="WP_004970430.1"
/translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
VASIRYYYELRSLQCIEDILAIQPTLPARIHRPYLHKGGRAWSRGQYILEHYRFVQNL
PEKYSEFLFPQKSVSLVQFIGKDGEDFDIQCSPSGFDREGELMLSLFFNKIVIARLTF
SVILTQNGHTAFIGGLQGAPKNTGPDVIRCATRACYGLFPKRIIFEAFCALMKACNVS
ECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYKLPTQVVRKPLSN
IASKKRSEYRKRYALLDYIHETAIRSLDAYPVNSEHQDLN"
gene 89045..89989
/gene="lpxM"
/locus_tag="SDY_RS23645"
/old_locus_tag="SDY_P110"
/gene_synonym="msbB"
CDS 89045..89989
/gene="lpxM"
/locus_tag="SDY_RS23645"
/old_locus_tag="SDY_P110"
/gene_synonym="msbB"
/EC_number="2.3.1.243"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858371.1"
/GO_component="GO:0009276 - Gram-negative-bacterium-type
cell wall [Evidence IEA]"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0016747 - acyltransferase activity,
transferring groups other than amino-acyl groups [Evidence
IEA]"
/GO_process="GO:0009103 - lipopolysaccharide biosynthetic
process [Evidence IEA]"
/note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
myristoyltransferase, an enzyme characterized in
Escherichia coli and involved in biosynthesis of the form
of lipid A found in that species and some closely related
species.; LpxM is lauroyl-Kdo(2)-lipid IV(A)
myristoyltransferase, an enzyme characterized in
Escherichia coli and involved in biosynthesis of the form
of lipid A found in that species and some closely related
species; Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
/protein_id="WP_004996485.1"
/translation="MKKYKSEFIPEFKKNYLSPVYWFTWFVLGMIAGISMFPPSFRDP
VLAKIGRWVGRLSRKARRRATINLSLCFPEKSDTEREIIVDNMFATALQSIVMMAELA
IRGPEKFQKRVFWKGLEILEEIRHNNRNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
gene <90157..>90285
/locus_tag="SDY_RS25780"
/pseudo
CDS <90157..>90285
/locus_tag="SDY_RS25780"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000198547.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS91 family transposase"
gene 90283..90831
/gene="tnpA"
/locus_tag="SDY_RS23650"
/old_locus_tag="SDY_P111"
CDS 90283..90831
/gene="tnpA"
/locus_tag="SDY_RS23650"
/old_locus_tag="SDY_P111"
/inference="COORDINATES: protein motif:HMM:NF038385.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS66-like element accessory protein TnpA"
/protein_id="WP_419722586.1"
/translation="MAGRRLGVPKSTACSMFVRFRKAGLSWPLPAGMSERELDARLYG
SASTVPVVLTESTVMPEVPGGKKRPRRPNFPYEFKIALVEQSLQPGACVAQIARENGI
NDNLLFNWRHQYRKGGLLPSGKNMPALLPVTLTPEPDNHGFDIIYTLSTHHQRFTFVR
LFDPYLIGSRSTFSHLAHHHIS"
gene complement(<91027..91617)
/locus_tag="SDY_RS25295"
/pseudo
CDS complement(<91027..91617)
/locus_tag="SDY_RS25295"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019606607.1"
/note="internal stop; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="reverse transcriptase domain-containing protein"
gene <91571..92329
/locus_tag="SDY_RS23660"
/old_locus_tag="SDY_P114"
/pseudo
CDS <91571..92329
/locus_tag="SDY_RS23660"
/old_locus_tag="SDY_P114"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_414557.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS4-like element IS421 family transposase"
gene complement(92370..93526)
/locus_tag="SDY_RS23665"
/old_locus_tag="SDY_P115"
CDS complement(join(92370..93277,93277..93526))
/locus_tag="SDY_RS23665"
/old_locus_tag="SDY_P115"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611998.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3-like element IS600 family transposase"
/protein_id="WP_134802193.1"
/translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW
VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKNNSVFCTGVAEKYALI
EQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGT
RRLQTELAENGIIVGRDRLARLRKELRQRCKQKRKFRATTNSNHNLPVAPNLLNQTFA
PTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALR
SQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNE
SLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISSAAFREKYHQMAA"
gene <93586..95374
/gene="traD"
/locus_tag="SDY_RS23675"
/old_locus_tag="SDY_P117"
/pseudo
CDS <93586..95374
/gene="traD"
/locus_tag="SDY_RS23675"
/old_locus_tag="SDY_P117"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001589353.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="type IV conjugative transfer system coupling
protein TraD"
gene complement(95383..95781)
/gene="vapC"
/locus_tag="SDY_RS23680"
CDS complement(95383..95781)
/gene="vapC"
/locus_tag="SDY_RS23680"
/EC_number="3.1.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858378.1"
/GO_function="GO:0000287 - magnesium ion binding [Evidence
IEA]"
/GO_function="GO:0004540 - RNA nuclease activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system
tRNA(fMet)-specific endonuclease VapC"
/protein_id="WP_000911312.1"
/translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELI
YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAAIHTGQIRAELARQGRPVGPFDQMIA
GHARSRGLIIVTNNTREFERVGGLRIEDWS"
gene complement(95781..96008)
/gene="vapB"
/locus_tag="SDY_RS23685"
/old_locus_tag="SDY_P120"
CDS complement(95781..96008)
/gene="vapB"
/locus_tag="SDY_RS23685"
/old_locus_tag="SDY_P120"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858379.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="toxin-antitoxin system antitoxin VapB"
/protein_id="WP_000450529.1"
/translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
ETWDEWFDGHSVSADFMDNREQPDMQERESF"
gene 96090..101351
/gene="traI"
/locus_tag="SDY_RS23695"
/old_locus_tag="SDY_P122"
/pseudo
CDS 96090..101351
/gene="traI"
/locus_tag="SDY_RS23695"
/old_locus_tag="SDY_P122"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_490592.1"
/GO_function="GO:0003678 - DNA helicase activity [Evidence
IEA]"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="conjugative transfer relaxase/helicase TraI"
gene 101371..102117
/gene="traX"
/locus_tag="SDY_RS23700"
/old_locus_tag="SDY_P124"
CDS 101371..102117
/gene="traX"
/locus_tag="SDY_RS23700"
/old_locus_tag="SDY_P124"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858383.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="conjugal transfer pilus acetylase TraX"
/protein_id="WP_000205723.1"
/translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
AYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAG
LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
AGKSLPRFWPGDFFPTFYACHLAVLGVLVL"
gene 102172..102732
/locus_tag="SDY_RS23705"
/old_locus_tag="SDY_P125"
CDS 102172..102732
/locus_tag="SDY_RS23705"
/old_locus_tag="SDY_P125"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858384.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="fertility inhibition protein FinO"
/protein_id="WP_000139365.1"
/translation="MTEQKRPVLTLKRKTEGTAPVRSRKTIINVTTPPKWKVKKQKLA
EKAAREAELAAKKAQARQALSIYLNLPTLDEAVNILKPWWPGLFDGDTPRLLACGIRD
VLLEDVAQRDIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
YAGARLAKIRRQNRIKAELQAVLDEK"
gene 102863..103075
/locus_tag="SDY_RS23710"
/old_locus_tag="SDY_P126"
CDS 102863..103075
/locus_tag="SDY_RS23710"
/old_locus_tag="SDY_P126"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858385.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ANR family transcriptional regulator"
/protein_id="WP_004971339.1"
/translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
VAPRTDWQQFARKRAEHCHRRCRGRV"
gene 103319..>103480
/locus_tag="SDY_RS24540"
/pseudo
CDS 103319..>103480
/locus_tag="SDY_RS24540"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052672.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="thermonuclease family protein"
gene complement(103496..104192)
/locus_tag="SDY_RS23715"
/pseudo
CDS complement(103496..104192)
/locus_tag="SDY_RS23715"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612230.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene <104239..104557
/locus_tag="SDY_RS23720"
/old_locus_tag="SDY_P130"
/pseudo
CDS <104239..104557
/locus_tag="SDY_RS23720"
/old_locus_tag="SDY_P130"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052672.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="thermonuclease family protein"
gene 104603..104811
/gene="hha"
/locus_tag="SDY_RS23725"
/old_locus_tag="SDY_P131"
/pseudo
CDS 104603..104811
/gene="hha"
/locus_tag="SDY_RS23725"
/old_locus_tag="SDY_P131"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_958726.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hemolysin expression modulator Hha"
gene complement(104960..105654)
/locus_tag="SDY_RS23730"
CDS complement(join(104960..105408,105408..105654))
/locus_tag="SDY_RS23730"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
/protein_id="WP_134801812.1"
/translation="MASVNIHCPRCQSAQVYRHGQNPKGHDRFRCRDCHRVFQLTYTY
EARKPGIKELITEMAFNGAGVRDTARTLKIGINTVIRTFKKLTPKQITSSPVAHADVA
LICELDEQWSFVGSKARQHWLWYAYNTKTGGGLAYTFGPRTDETCRELLALLTPFNIR
MITSDDWGSYGREVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHE
KVIGTFIEKHMFY"
gene <105702..106214
/locus_tag="SDY_RS23735"
/old_locus_tag="SDY_P135"
/pseudo
CDS <105702..106214
/locus_tag="SDY_RS23735"
/old_locus_tag="SDY_P135"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858390.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DUF2726 domain-containing protein"
gene 106454..106714
/locus_tag="SDY_RS23740"
/old_locus_tag="SDY_P136"
CDS 106454..106714
/locus_tag="SDY_RS23740"
/old_locus_tag="SDY_P136"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858391.1"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication regulatory protein RepA"
/protein_id="WP_000083819.1"
/translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
gene 106938..107012
/gene="tap"
/locus_tag="SDY_RS23745"
CDS 106938..107012
/gene="tap"
/locus_tag="SDY_RS23745"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001370046.1"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/GO_process="GO:0031556 - transcriptional attenuation by
ribosome [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RepA leader peptide Tap"
/protein_id="WP_001365705.1"
/translation="MPGKVQDFFLCSLLLRIVSAGWCD"
gene 107005..107862
/gene="repA"
/locus_tag="SDY_RS23750"
/old_locus_tag="SDY_P137"
CDS 107005..107862
/gene="repA"
/locus_tag="SDY_RS23750"
/old_locus_tag="SDY_P137"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858393.2"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="incFII family plasmid replication initiator
RepA"
/protein_id="WP_000130974.1"
/translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
LATESDAGTLSITRATRALTFLAELGLITYQTEYDPLIGCNIPTDITFTPALFAALDV
SEEAVASARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
YSRLATASP"
gene complement(108972..110180)
/locus_tag="SDY_RS23760"
/old_locus_tag="SDY_P139"
CDS complement(108972..110180)
/locus_tag="SDY_RS23760"
/old_locus_tag="SDY_P139"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000198547.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS91 family transposase"
/protein_id="WP_000198558.1"
/translation="MTRSGGDFQPRPLKRLFTTNQCWTSFLDAGGLRDIEVEAVTKML
ACGTRILGVKEYNCDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDW
VHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLN
CHPHVHVSVTCGCLNKHGQWKKLSFLKDAMRSRWMWNMRQLLLKAWSEGLAMPESLSH
ITTESQWRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGA
SLSFRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQV
YRALGMDKPAPVAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNAR
DISLLRYMPA"
gene complement(110161..110433)
/locus_tag="SDY_RS23765"
/old_locus_tag="SDY_P141"
CDS complement(110161..110433)
/locus_tag="SDY_RS23765"
/old_locus_tag="SDY_P141"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_145811.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000019161.1"
/translation="MSHNLEHQKVHTRMVKEVLKAVARANNHPYQSVFTDFIAGHPSC
TVCFWETFHKMSPDSPYEYVTFCHTCRRFDLYETEAEMKADDPKWW"
gene <110490..>111314
/gene="ipaH7.8"
/locus_tag="SDY_RS24690"
/pseudo
CDS <110490..>111314
/gene="ipaH7.8"
/locus_tag="SDY_RS24690"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858212.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="T3SS effector E3 ubiquitin-protein ligase
IpaH7.8"
gene <111336..111971
/locus_tag="SDY_RS24695"
/pseudo
CDS <111336..111971
/locus_tag="SDY_RS24695"
/inference="COORDINATES: protein motif:HMM:NF033516.0"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3-like element IS629 family transposase"
gene complement(<112014..112537)
/locus_tag="SDY_RS23775"
/pseudo
CDS complement(<112014..112537)
/locus_tag="SDY_RS23775"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611997.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3-like element ISSfl11 family transposase"
gene complement(112605..113087)
/locus_tag="SDY_RS23780"
/old_locus_tag="SDY_P144"
CDS complement(112605..113087)
/locus_tag="SDY_RS23780"
/old_locus_tag="SDY_P144"
/EC_number="2.3.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858192.1"
/GO_function="GO:0008080 - N-acetyltransferase activity
[Evidence IEA]"
/GO_function="GO:0016746 - acyltransferase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="GNAT family N-acetyltransferase"
/protein_id="WP_000405248.1"
/translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
RTFVICLEDTLRVVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCTQGH
GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
"
gene complement(113078..113380)
/locus_tag="SDY_RS23785"
/old_locus_tag="SDY_P145"
CDS complement(113078..113380)
/locus_tag="SDY_RS23785"
/old_locus_tag="SDY_P145"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858193.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF1778 domain-containing protein"
/protein_id="WP_162147618.1"
/translation="MEFFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
DFIMELAYQEAKNIILDQRLFVLDNERYDSFITQLEAPVQNAEGRERLMAVKPEWK"
gene complement(113794..>114510)
/gene="istB"
/locus_tag="SDY_RS23790"
/old_locus_tag="SDY_P146"
/pseudo
CDS complement(113794..>114510)
/gene="istB"
/locus_tag="SDY_RS23790"
/old_locus_tag="SDY_P146"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858162.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS21-like element IS100kyp family helper ATPase
IstB"
gene complement(<114661..115803)
/locus_tag="SDY_RS23795"
/old_locus_tag="SDY_P147"
/pseudo
CDS complement(<114661..115803)
/locus_tag="SDY_RS23795"
/old_locus_tag="SDY_P147"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000198547.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS91 family transposase"
gene complement(115784..116056)
/locus_tag="SDY_RS23800"
/old_locus_tag="SDY_P148"
CDS complement(115784..116056)
/locus_tag="SDY_RS23800"
/old_locus_tag="SDY_P148"
/inference="COORDINATES: similar to AA
sequence:RefSeq:YP_145811.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000019161.1"
/translation="MSHNLEHQKVHTRMVKEVLKAVARANNHPYQSVFTDFIAGHPSC
TVCFWETFHKMSPDSPYEYVTFCHTCRRFDLYETEAEMKADDPKWW"
gene complement(<116130..116663)
/gene="tnpA"
/locus_tag="SDY_RS23805"
/old_locus_tag="SDY_P149"
/pseudo
CDS complement(<116130..116663)
/gene="tnpA"
/locus_tag="SDY_RS23805"
/old_locus_tag="SDY_P149"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_709480.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66-like element accessory protein TnpA"
gene complement(116800..116973)
/locus_tag="SDY_RS25785"
/old_locus_tag="SDY_P150"
CDS complement(116800..116973)
/locus_tag="SDY_RS25785"
/old_locus_tag="SDY_P150"
/inference="COORDINATES: protein motif:HMM:NF013677.6"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="WP_011379008.1"
/translation="MDSINVRFSSPPQDSCLLLYDSMEFKLDLIEKSYQLGACVAQLA
REYGINDNLLFTW"
gene 117314..118768
/gene="ospC4"
/locus_tag="SDY_RS23815"
/old_locus_tag="SDY_P151"
CDS 117314..118768
/gene="ospC4"
/locus_tag="SDY_RS23815"
/old_locus_tag="SDY_P151"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858248.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type 3 secretion system effector OspC4"
/protein_id="WP_011379007.1"
/translation="MKIPEAVNHINVQNNVDLVDGKTNPNKATKALQKNILRVTNSSS
SGISEKHLDHCANTVKNFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
EHLDKVSRHYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNNILNIKSFD
KIQSENIQTHKNTYSEDIKEISNHDFVFFGVEISNHQEKLPLNKTHHTVDFGANAYII
DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
NTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
TDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIALYLLSK
FNFTKQDVAEMEKMNNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNKKFQKVN
SGDTMLDNAMKSKDSKMIDFLLKNGAILGKRFEI"
gene 119107..120263
/locus_tag="SDY_RS23825"
/old_locus_tag="SDY_P153"
CDS join(119107..119356,119356..120263)
/locus_tag="SDY_RS23825"
/old_locus_tag="SDY_P153"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611998.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
/protein_id="WP_134802187.1"
/translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGPSRLSVPEGTLGQW
VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDIFKKSNSVFCPGVAEKYALV
EQWRQQFPVEAMCRVPGVSRSGYYDRVQHAPSDRKQSDERLKLEIKVAHIRTRETYGT
RRLQTELEDNGIIVGRDRLARLRKELRLHCKQKRKFRATTNSDHNLPVTPNLLNQNFT
PTAPNQVWVADITYVATREGWLYLAGVKDVYTCEIVGYAMGERMTKELTGKALFMALR
SQRPPAGLIHHTDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNE
SLSHYRFKSRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFRIKYYQMTA"
gene <120310..121107
/locus_tag="SDY_RS23830"
/pseudo
CDS <120310..121107
/locus_tag="SDY_RS23830"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010972061.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="internal stop; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene <121204..>121563
/locus_tag="SDY_RS23835"
/pseudo
CDS <121204..>121563
/locus_tag="SDY_RS23835"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000952428.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="Mu transposase domain-containing protein"
gene <121546..122383
/locus_tag="SDY_RS24700"
/old_locus_tag="SDY_P156"
/pseudo
CDS <121546..122383
/locus_tag="SDY_RS24700"
/old_locus_tag="SDY_P156"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000244358.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS4 family transposase"
gene complement(122432..123628)
/locus_tag="SDY_RS23850"
/old_locus_tag="SDY_P158"
CDS complement(122432..123628)
/locus_tag="SDY_RS23850"
/old_locus_tag="SDY_P158"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001297906.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS110 family transposase"
/protein_id="WP_011379003.1"
/translation="MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE
NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG
EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFNDDLAAQTTQASNRIR
GLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR
LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP
VLTSMPGAGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN
KALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTF
YPPQGS"
gene complement(123820..124813)
/gene="istA"
/locus_tag="SDY_RS23855"
/old_locus_tag="SDY_P159"
/pseudo
CDS complement(123820..124813)
/gene="istA"
/locus_tag="SDY_RS23855"
/old_locus_tag="SDY_P159"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858254.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS21 family transposase"
gene 125160..125968
/locus_tag="SDY_RS25310"
/pseudo
CDS 125160..125968
/locus_tag="SDY_RS25310"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000878026.1"
/note="frameshifted; internal stop; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS110 family transposase"
gene 126165..126944
/gene="ipaJ"
/locus_tag="SDY_RS23860"
/old_locus_tag="SDY_P160"
CDS 126165..126944
/gene="ipaJ"
/locus_tag="SDY_RS23860"
/old_locus_tag="SDY_P160"
/EC_number="3.4.22.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858255.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector cysteine
protease IpaJ"
/protein_id="WP_024263024.1"
/translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
CERDLYLITSGNYNPRTHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
gene complement(127894..128823)
/gene="virB"
/locus_tag="SDY_RS23865"
/old_locus_tag="SDY_P161"
CDS complement(127894..128823)
/gene="virB"
/locus_tag="SDY_RS23865"
/old_locus_tag="SDY_P161"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858256.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="virulence regulon transcriptional activator
VirB"
/protein_id="WP_000227976.1"
/translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
gene complement(129030..129266)
/locus_tag="SDY_RS23870"
/old_locus_tag="SDY_P162"
CDS complement(129030..129266)
/locus_tag="SDY_RS23870"
/old_locus_tag="SDY_P162"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858257.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="phosphopantetheine-binding protein"
/protein_id="WP_000588956.1"
/translation="MIKERILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
ISFEFNLRIDESALEHIITIGDLISVVKNSTKSI"
gene complement(129270..131171)
/gene="ipaA"
/locus_tag="SDY_RS23875"
/old_locus_tag="SDY_P163"
CDS complement(129270..131171)
/gene="ipaA"
/locus_tag="SDY_RS23875"
/old_locus_tag="SDY_P163"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858258.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS effector invasin IpaA"
/protein_id="WP_011379000.1"
/translation="MHNVNNTQATTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
SSVSEKESFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEIIEFSNVLYSLV
HQNGLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
DSLRNQRKNTIDSNGFGIGKLSRDLNTVAVFPELLRKVLNNILEDIKDSHPIQDGLPT
PPKDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
PTSQTNDLLPRNANSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKVFNHTPDN
SDGIDSDLLTTSSQERSANNSLSRGHRPLNIQNSSTTTPLRPEGVTNSNDNSSDTTKS
SASFSHRVTSQISKFNSNTDSKVLQTDFLSRNGDPYLTRETIFEASKKVTNSLSNLIS
LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKITDANTLNYVTETNADTIDKNHAI
YEKAKEVSSALSKVLSKIDDTSAELLTEDISNLKNNNDITAENNNIYKAAKDVTTSLS
KVLKNINKD"
gene complement(131180..132178)
/gene="ipaD"
/locus_tag="SDY_RS23880"
/old_locus_tag="SDY_P164"
CDS complement(131180..132178)
/gene="ipaD"
/locus_tag="SDY_RS23880"
/old_locus_tag="SDY_P164"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858259.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system needle tip complex
protein IpaD"
/protein_id="WP_001028028.1"
/translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
TMLNDTLHNIRTTNQALKKDLSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSKK
EYPINKDARELLHSAPEEAELDGYQMISHRELWDKIAKSINNINEQYLKVYEHAVSSY
TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVNSLKAELTKLKEKYEDKPLYPANNTV
SKEQADKWLTELGGTIGTVSRKNGGYVVNINMSPIDNMLKSLNNLGGNGEVVLDNAKY
QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
gene complement(132229..133320)
/gene="ipaC"
/locus_tag="SDY_RS23885"
/old_locus_tag="SDY_P165"
CDS complement(132229..133320)
/gene="ipaC"
/locus_tag="SDY_RS23885"
/old_locus_tag="SDY_P165"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858260.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS translocon subunit IpaC"
/protein_id="WP_000405469.1"
/translation="MEIQNTKPTQILYTDISTKQTQSSSETQKSQNYQQIAAHIPLNA
GKNPVLTTTLNDDQLVKLSEQVQHDSEIIARLTDKKMKDLSEMSHTITPENTLDISSL
SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
AVTQVGITGIGAKKTHSGISEQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
QTNSSTKILGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRAYELNTLSAQQKQ
NIGRATMETSAVAGNISTSGGRYASALEEEEQLISQASSKQAEEASQVSKEASQATNQ
LIQKLLNIIDNINQSRSSTASQIAGNIRA"
gene complement(133340..135082)
/gene="ipaB"
/locus_tag="SDY_RS23890"
/old_locus_tag="SDY_P166"
CDS complement(133340..135082)
/gene="ipaB"
/locus_tag="SDY_RS23890"
/old_locus_tag="SDY_P166"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858261.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system translocon subunit
IpaB"
/protein_id="WP_000552051.1"
/translation="MHNVSTTNTGLPLAKILASTELGDNTIQAANDAANKLFSLTIAD
LTANNNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
IQTRLSELAPDSPEKKKLRREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGSSL
ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGS
VASAVFQNNASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQAN
RTDVAKAILQQTTA"
gene complement(135088..135555)
/gene="ipgC"
/locus_tag="SDY_RS23895"
/old_locus_tag="SDY_P167"
CDS complement(135088..135555)
/gene="ipgC"
/locus_tag="SDY_RS23895"
/old_locus_tag="SDY_P167"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858262.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SycD/LcrH family type III secretion system
chaperone IpgC"
/protein_id="WP_000055835.1"
/translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
gene complement(135613..136239)
/gene="ipgB1"
/locus_tag="SDY_RS23900"
/old_locus_tag="SDY_P168"
CDS complement(135613..136239)
/gene="ipgB1"
/locus_tag="SDY_RS23900"
/old_locus_tag="SDY_P168"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858263.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion effector IpgB1"
/protein_id="WP_001166524.1"
/translation="MQILNKILPQVEFAIPRPSFNSLSHNKLVKKILSVFNLKQRFPH
KNFGCPVNINKIRDSVIDKIKDSNSGDQLFCWMSQERTSYVSSMINRSIDEMAIHNGV
VLTSDNKKNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
gene complement(136255..136644)
/gene="ipgA"
/locus_tag="SDY_RS23905"
/old_locus_tag="SDY_P169"
CDS complement(136255..136644)
/gene="ipgA"
/locus_tag="SDY_RS23905"
/old_locus_tag="SDY_P169"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858264.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone IpgA"
/protein_id="WP_010921664.1"
/translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
PDELIESLYEFLFCIKLTIANITSEVN"
gene complement(136657..138141)
/gene="icsB"
/locus_tag="SDY_RS23910"
/old_locus_tag="SDY_P170"
CDS complement(136657..138141)
/gene="icsB"
/locus_tag="SDY_RS23910"
/old_locus_tag="SDY_P170"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858265.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector IcsB"
/protein_id="WP_000601046.1"
/translation="MILKISNFIDASNTKGPIRVEDTEHGPILVAQKFNLKDLFFRTL
STINAKINSQILNEQLKNYRLANQKSLLLFLKTLASEKSAESAFAAYEAVKNSIQHSF
TGKDIKLMLNTAERFHGIGTAKNLERHLVFRCWENRGITHLGHTSISIKNNLLQEPTH
TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISYNLFGLDE
TNMSKFICQKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
NNVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMSRVLNELKTGATDKKEE
IIEKSIKTIDYYNSLKSPDLGTKLYIHDLLQVNKLLLNNSHSNI"
gene 138455..140071
/locus_tag="SDY_RS23915"
/old_locus_tag="SDY_P171"
CDS 138455..140071
/locus_tag="SDY_RS23915"
/old_locus_tag="SDY_P171"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858266.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector inositol
phosphate phosphatase"
/protein_id="WP_000548332.1"
/translation="MHITNLGLHQVSFQSGDSYKGAEETGNQKSVSVISYQRVKNGER
NKGVEALNRLYLQNQTSLTGKGLLFARDRAAVFYEAIKLAGGDTSKIKAMMEQLDTYK
LGEVDKRNINELNKVISEEIRAQLGIKNKKELQSEIKQIFTNHLNNKNWEPINKNINY
HGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESQHIANMWLSKVVDDEGKE
IFSGIRHGVISAYGLKKNSSERAVAARNKAEELASAALYSRRELLSQALSGKTVDLKI
VSTSLLTPTSLTGGEESMLKDQVKALKGLNSKRGEPTKLLIRNSDGLLQEVNVNLKVV
TFNFGVNELALKMGLGWRNVDKLNGESICSLLGDNFLKNGVIGGWAAEAIEKNPSCKN
DVIYLANQIKEILNKKLQKNDNGEPYKLSQRMALLAYTIGAVPCWNCKSGKDRTGMQD
AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
LPLSSLELSYAERIGDPKIWNMVKGYSSFV"
gene 140081..140443
/gene="ipgE"
/locus_tag="SDY_RS23920"
/old_locus_tag="SDY_P172"
CDS 140081..140443
/gene="ipgE"
/locus_tag="SDY_RS23920"
/old_locus_tag="SDY_P172"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858267.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone IpgE"
/protein_id="WP_000389733.1"
/translation="MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLL
CPFCALPENINDLIYALSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYY
ISRVRWLKDEFARRMKGY"
gene 140443..140901
/gene="ipgF"
/locus_tag="SDY_RS23925"
/old_locus_tag="SDY_P173"
CDS 140443..140901
/gene="ipgF"
/locus_tag="SDY_RS23925"
/old_locus_tag="SDY_P173"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858268.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system lytic transglycosylase
IpgF"
/protein_id="WP_000086107.1"
/translation="MSRFVFILLCFIPHLGRADCWDKAGERYNIPSSLLKAIAEKESG
FNKSAVNVNNNGSKDYGIMQINDFHSKRLREMGYTEEMLISHPCLSVHYAAKLLNEFM
LMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYKRYLRIAAESKQNNRRI"
gene 140910..142025
/gene="mxiG"
/locus_tag="SDY_RS23930"
/old_locus_tag="SDY_P174"
CDS 140910..142025
/gene="mxiG"
/locus_tag="SDY_RS23930"
/old_locus_tag="SDY_P174"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858269.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system protein MxiG"
/protein_id="WP_001287355.1"
/translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
EFGNDNFPENIIPVTDSKSDGIIYLTISKDNICQFSDEKGEQIDINSQFNSFEYDGIS
FHLKNMREDKSRGHILNGMYKNPSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDN
RYGIVNTGQCNYILAETQNDAVWASVALNKTGFTKCRYILVSNKEINRIQQYINQRFP
YINLYVLNLVSDKAELLVFLSKERNSSKDTELDKLKNALIVEFPYIKNIKFNYLSDHN
ARGDAKGIFTKVNVQYKEICENNKVTYSVREELTDEKLELINRLISEHKNIYGDQYIE
FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
gene 142033..142284
/locus_tag="SDY_RS23935"
/old_locus_tag="SDY_P175"
CDS 142033..142284
/locus_tag="SDY_RS23935"
/old_locus_tag="SDY_P175"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858270.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system needle complex
protein"
/protein_id="WP_011378999.1"
/translation="MSVTVPNKDWTLSSLSETFDDGTQTLQGELTLALEALATNPSNP
QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNYR"
gene 142297..142590
/gene="mxiI"
/locus_tag="SDY_RS23940"
/old_locus_tag="SDY_P176"
CDS 142297..142590
/gene="mxiI"
/locus_tag="SDY_RS23940"
/old_locus_tag="SDY_P176"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858271.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system inner rod protein
MxiI"
/protein_id="WP_001106824.1"
/translation="MNYIYPVNQVDIIKASDFQSQEISSLEEVVSAKYSDIKMDTDIQ
VSQIMEMVSNQESLNPESLAKLQMMLSNYSIGISLAGTLARKTVSAVETLLKS"
gene 142596..143321
/gene="mxiJ"
/locus_tag="SDY_RS23945"
/old_locus_tag="SDY_P177"
CDS 142596..143321
/gene="mxiJ"
/locus_tag="SDY_RS23945"
/old_locus_tag="SDY_P177"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858272.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctJ family type III secretion inner membrane
ring lipoprotein Mxi"
/protein_id="WP_000621939.1"
/translation="MIRYKFFILFLLLMLIGCEQRDELISNLSQRQANEIISVLERHN
ISARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLDDKNISSKPMHISVIAIYDSPKESE
LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKETKSEFLINEVIYVFLG
MAVLVVILLVWAFKTGWFKRNKI"
gene 143318..143845
/locus_tag="SDY_RS23950"
/old_locus_tag="SDY_P178"
CDS 143318..143845
/locus_tag="SDY_RS23950"
/old_locus_tag="SDY_P178"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858273.1"
/GO_component="GO:0030257 - type III protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0030254 - protein secretion by the type
III secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion apparatus protein OrgA/MxiK"
/protein_id="WP_000620626.1"
/translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
NLIINKYDLNCDIDPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
ISKQGEAAIRSGFWHLIAWKENISVGVYERINLLFNPIVLEGNYTPVERNLSRLNEGM
QYAKRHFTGIQTSCL"
gene 143787..144482
/gene="mxiN"
/locus_tag="SDY_RS23955"
/old_locus_tag="SDY_P179"
CDS 143787..144482
/gene="mxiN"
/locus_tag="SDY_RS23955"
/old_locus_tag="SDY_P179"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858274.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Mxi-Spa type III secretion system linker protein
MxiN"
/protein_id="WP_011378997.1"
/translation="MKVCNMQKGTLPVSRHHAYDGVVIKRMEKELCKTIKDRDTESKK
KAICVIKDATKKAESLRIDAVCDGYQIGIQTAFEHIVDYICEWKLKQNENRRNIEDYI
TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNSALRKKLELDLYKYRSDV
KIIFKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFEELAHKKLRQ
IAEDLLKENPVND"
gene 144475..144882
/gene="mxiM"
/locus_tag="SDY_RS23960"
/old_locus_tag="SDY_P180"
CDS 144475..144882
/gene="mxiM"
/locus_tag="SDY_RS23960"
/old_locus_tag="SDY_P180"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000609865.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system protein MxiM"
/protein_id="WP_000609864.1"
/translation="MINQINASNALQQRLNSEELVNLNDRLSSSQSLDEDIIYEIMQY
FSQSELNPIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
SIYNNINFYIKTTTFDSLISVFEAGRDADDSTW"
gene 144866..145294
/gene="mxiM"
/locus_tag="SDY_RS23965"
/old_locus_tag="SDY_P181"
CDS 144866..145294
/gene="mxiM"
/locus_tag="SDY_RS23965"
/old_locus_tag="SDY_P181"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858276.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system pilotin MxiM"
/protein_id="WP_011378996.1"
/translation="MIRHGSNKLKIFILSILLLSLSGCALKASSNSEKEWHIVPVSKD
YFSIPNDLFWSFNTTNKSINVYSKCISGKAVYSFNAGKFMSNFNVKEVDGCFMDAQKI
AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGL"
gene 145424..146056
/gene="mxiE"
/locus_tag="SDY_RS23970"
/old_locus_tag="SDY_P182"
CDS 145424..146056
/gene="mxiE"
/locus_tag="SDY_RS23970"
/old_locus_tag="SDY_P182"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858277.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system transcriptional
activator MxiE"
/protein_id="WP_000398257.1"
/translation="MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALV
EHSHAEKCIHFYHENDLRDSCNTESMLDKLMLKFIFSSDQNVSNALAMIRMTESYHLV
LYLLRTIEKEKEVRIKSLTEHYGVSEAYFRTLCRKALGAKVKEQLNTWRLVNGLLDVF
LHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
gene 146043..147743
/gene="mxiD"
/locus_tag="SDY_RS23975"
/old_locus_tag="SDY_P183"
CDS 146043..147743
/gene="mxiD"
/locus_tag="SDY_RS23975"
/old_locus_tag="SDY_P183"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858278.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system secretin MxiD"
/protein_id="WP_000714402.1"
/translation="MKKFNVKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEKMLEKLTLLVGLVWYKDGNAL
YIYDSGELISKVILLENISLNYLIQYLKDANLYDDRYPIRGNISDKTFYISGPPALVE
LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
NNGKALSNRQAKNDLMPPFNITQKVSEDGNDFSFSSVTNNSILEDVSLIAYPETNSIL
VKGNDQQIQIIRDIITQLDVAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
LVGERNSSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSLSNYNYNNENTSVLP
EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN
IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
"
gene 147762..148829
/gene="mxiC"
/locus_tag="SDY_RS23980"
/old_locus_tag="SDY_P184"
CDS 147762..148829
/gene="mxiC"
/locus_tag="SDY_RS23980"
/old_locus_tag="SDY_P184"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858279.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system gatekeeper subunit
MxiC"
/protein_id="WP_000887827.1"
/translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
LDRDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVELLTKIINEIISGSEKSVNAG
INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNTSTTDQYIEWLGNFGFNHRHTIVNFV
EQSLIVDMDSEKPSCNTYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
QLLLTLLYIFQYPSESEQILTSVIEVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
EIAINILRELVTSAYKKELSR"
gene 148842..150902
/gene="mxiA"
/locus_tag="SDY_RS23985"
/old_locus_tag="SDY_P185"
/gene_synonym="virH"
CDS 148842..150902
/gene="mxiA"
/locus_tag="SDY_RS23985"
/old_locus_tag="SDY_P185"
/gene_synonym="virH"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858280.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system export apparatus
protein MxiA"
/protein_id="WP_024263027.1"
/translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEREKSLSESDPSGYT
GTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKINANDMEGLIERIRSQFFIDY
GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVPT
SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYYQLSQALLNNINEIFGIQETKNMLD
QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
VMETLAHALRELRNAKKDFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
LKTI"
gene 150915..151316
/gene="spa15"
/locus_tag="SDY_RS23990"
/old_locus_tag="SDY_P186"
/gene_synonym="spaK"
CDS 150915..151316
/gene="spa15"
/locus_tag="SDY_RS23990"
/old_locus_tag="SDY_P186"
/gene_synonym="spaK"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858281.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone Spa15/SpaK"
/protein_id="WP_011378994.1"
/translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDNMPAIN
IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
VIKDDYVHDGIVFAEILHEFYQRMEILNEVL"
gene 151320..152612
/gene="spaL"
/locus_tag="SDY_RS23995"
/old_locus_tag="SDY_P187"
/gene_synonym="mxiB; spa47"
CDS 151320..152612
/gene="spaL"
/locus_tag="SDY_RS23995"
/old_locus_tag="SDY_P187"
/gene_synonym="mxiB; spa47"
/EC_number="7.1.2.2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858282.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system ATPase SpaL"
/protein_id="WP_000122614.1"
/translation="MSYTKLLTQLSFPNKISGPILETSLSDVSIGEICNIQAGIESNE
IVARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFAS
AGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
QKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIEELRTIIDFGEYKPGENA
SQDKIYNKISVVESFLKQDYRLGFTYEQTMELIGETIR"
gene 152705..153043
/gene="spa13"
/locus_tag="SDY_RS24000"
/old_locus_tag="SDY_P188"
/gene_synonym="spaM"
CDS 152705..153043
/gene="spa13"
/locus_tag="SDY_RS24000"
/old_locus_tag="SDY_P188"
/gene_synonym="spaM"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858283.1"
/note="Not similar to SpaM from Salmonella T3SS; Derived
by automated computational analysis using gene prediction
method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system protein Spa13"
/protein_id="WP_024263028.1"
/translation="MEALDKRIIYFLQLENDLEPVGAQSVSQLFNTRRKIAIVKKHII
QYQSERIILKGRIEEIQKDIDEANASKRKLLHKESKICKRISLIKRNNFAKQLILDEL
SQEDMKHGIR"
gene 153030..153908
/gene="spa32"
/locus_tag="SDY_RS24005"
/old_locus_tag="SDY_P189"
CDS 153030..153908
/gene="spa32"
/locus_tag="SDY_RS24005"
/old_locus_tag="SDY_P189"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858284.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system needle length
regulator Spa32"
/protein_id="WP_001162452.1"
/translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDILESMVIKENILIPVQ
DIKAREKINIGDMRGIFSYNESGNADKNFERSHTSSANPDNLLEPDNRNSQIGLKNHS
LSIDKNIADIISLLNGSVAKSFDLPVMKKNTSDITPSMSLQEKSIVENDKNVYQKNSE
MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
NKNNSTGYNEQSEEEC"
gene 153902..154783
/gene="spa33"
/locus_tag="SDY_RS24010"
/old_locus_tag="SDY_P190"
/gene_synonym="spaO"
CDS 153902..154783
/gene="spa33"
/locus_tag="SDY_RS24010"
/old_locus_tag="SDY_P190"
/gene_synonym="spaO"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000944309.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctQ family type III secretion system ring
protein Spa33"
/protein_id="WP_000944986.1"
/translation="MLRLKHFDANEKLQILYAKQLCERFAIQTFKNKFTGSESLVTLT
SVCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSSVFSIPELSDKITF
RITNEIQFATTGSHLCCFSSSLGIIYLDKMPVLRNQVSLDLLHHLLEFCLGSSNVRLA
TLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSESNGESDHTEVSLAL
FNYDDINVKVDFILLEKKMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELV
SIEDGYGIEISSWMVKE"
gene 154788..155438
/gene="spa24"
/locus_tag="SDY_RS24015"
/old_locus_tag="SDY_P191"
/gene_synonym="spaP"
CDS 154788..155438
/gene="spa24"
/locus_tag="SDY_RS24015"
/old_locus_tag="SDY_P191"
/gene_synonym="spaP"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858286.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system export apparatus
protein Spa24/SpaP"
/protein_id="WP_000947538.1"
/translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQY
LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
FIVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINVPA"
gene 155453..155713
/gene="spaQ"
/locus_tag="SDY_RS24020"
/old_locus_tag="SDY_P191a"
CDS 155453..155713
/gene="spaQ"
/locus_tag="SDY_RS24020"
/old_locus_tag="SDY_P191a"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858287.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system export apparatus
protein SpaQ"
/protein_id="WP_001280546.1"
/translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQE
QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
gene 155713..156483
/gene="spa29"
/locus_tag="SDY_RS24025"
/old_locus_tag="SDY_P192"
/gene_synonym="spaR"
CDS 155713..156483
/gene="spa29"
/locus_tag="SDY_RS24025"
/old_locus_tag="SDY_P192"
/gene_synonym="spaR"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858288.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system export apparatus
protein Spa29/SpaR"
/protein_id="WP_000355395.1"
/translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
gene 156490..157518
/gene="spa40"
/locus_tag="SDY_RS24030"
/old_locus_tag="SDY_P193"
/gene_synonym="spaS"
CDS 156490..157518
/gene="spa40"
/locus_tag="SDY_RS24030"
/old_locus_tag="SDY_P193"
/gene_synonym="spaS"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858289.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system export apparatus
switch protein Spa40/SpaS"
/protein_id="WP_001284685.1"
/translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
SQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKRE
YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
LEQVENTH"
gene 157540..157773
/locus_tag="SDY_RS24035"
/old_locus_tag="SDY_P194"
CDS 157540..157773
/locus_tag="SDY_RS24035"
/old_locus_tag="SDY_P194"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000538708.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0071468 - cellular response to acidic pH
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="biofilm/acid-resistance regulator YmgB/AriR"
/protein_id="WP_000538708.1"
/translation="MGVNFCNKIGIDQSEFEIESSIINSIANEVLNPISFLSNKDIIN
VLLRKISSECDLVRKDIYRCALELVVEKTPDDL"
gene complement(<158380..>159224)
/locus_tag="SDY_RS24040"
/old_locus_tag="SDY_P195"
/pseudo
CDS complement(<158380..>159224)
/locus_tag="SDY_RS24040"
/old_locus_tag="SDY_P195"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611997.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(<159218..159797)
/locus_tag="SDY_RS24545"
/pseudo
CDS complement(<159218..159797)
/locus_tag="SDY_RS24545"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477168.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(159860..160264)
/locus_tag="SDY_RS24055"
CDS complement(159860..160264)
/locus_tag="SDY_RS24055"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858300.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_038815643.1"
/translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPGVQILGTRAGCRVYGICGTTSTLHVAG
RGVVCIKNICSPRRMIIHRIRKRPVVAVSDEM"
gene complement(<160454..160582)
/locus_tag="SDY_RS25315"
/pseudo
CDS complement(<160454..160582)
/locus_tag="SDY_RS25315"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_039289737.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS630 family transposase"
gene complement(160815..161531)
/locus_tag="SDY_RS24060"
/old_locus_tag="SDY_P198"
CDS complement(160815..161531)
/locus_tag="SDY_RS24060"
/old_locus_tag="SDY_P198"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858301.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_005059327.1"
/translation="MNDNSLLRNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
VIFELLILKQYFILPLSLSCIISSLVISIIIRIYGRIFSVSCFSDIPFVREHRIKLIM
AGFLVYFWLFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
LIFNTEQSGFYEINDVYVRK"
gene complement(162115..>162516)
/locus_tag="SDY_RS24065"
/pseudo
CDS complement(162115..>162516)
/locus_tag="SDY_RS24065"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_033635647.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(162546..>163007)
/locus_tag="SDY_RS24070"
/old_locus_tag="SDY_P201"
/pseudo
CDS complement(162546..>163007)
/locus_tag="SDY_RS24070"
/old_locus_tag="SDY_P201"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000343760.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene 163060..164269
/locus_tag="SDY_RS24075"
/pseudo
CDS 163060..164269
/locus_tag="SDY_RS24075"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611570.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; internal stop; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
misc_feature 163341..163457
/locus_tag="SDY_RS24075"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF01497"
/inference="COORDINATES: profile:INFERNAL:1.1.5"
/note="AL1L pseudoknot; Derived by automated computational
analysis using gene prediction method: cmsearch."
/pseudo
/db_xref="RFAM:RF01497"
gene complement(<164296..>164451)
/locus_tag="SDY_RS24080"
/pseudo
CDS complement(<164296..>164451)
/locus_tag="SDY_RS24080"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000343765.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(164626..>165055)
/locus_tag="SDY_RS24085"
/old_locus_tag="SDY_P204"
/pseudo
CDS complement(164626..>165055)
/locus_tag="SDY_RS24085"
/old_locus_tag="SDY_P204"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013747467.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing N-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(165211..165468)
/locus_tag="SDY_RS24090"
/old_locus_tag="SDY_P205"
CDS complement(165211..165468)
/locus_tag="SDY_RS24090"
/old_locus_tag="SDY_P205"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="WP_000124081.1"
/translation="MARSAKPRKRKPAPQRSKLLRYVVKLHEDDFFDEEEAEVLRFDN
FDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEIAR"
gene complement(<166215..166694)
/locus_tag="SDY_RS24550"
/pseudo
CDS complement(<166215..166694)
/locus_tag="SDY_RS24550"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016248301.1"
/GO_function="GO:0003723 - RNA binding [Evidence IEA]"
/GO_function="GO:0003964 - RNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0006278 - RNA-templated DNA biosynthetic
process [Evidence IEA]"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="reverse transcriptase/maturase family protein"
gene complement(<166622..>166988)
/locus_tag="SDY_RS24100"
/pseudo
CDS complement(<166622..>166988)
/locus_tag="SDY_RS24100"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477168.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(<166990..167674)
/locus_tag="SDY_RS24105"
/pseudo
CDS complement(<166990..167674)
/locus_tag="SDY_RS24105"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612086.1"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
misc_feature complement(167277..167393)
/locus_tag="SDY_RS24105"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF01497"
/inference="COORDINATES: profile:INFERNAL:1.1.5"
/note="AL1L pseudoknot; Derived by automated computational
analysis using gene prediction method: cmsearch."
/pseudo
/db_xref="RFAM:RF01497"
gene complement(167852..169054)
/gene="virA"
/locus_tag="SDY_RS24110"
/old_locus_tag="SDY_P211"
CDS complement(167852..169054)
/gene="virA"
/locus_tag="SDY_RS24110"
/old_locus_tag="SDY_P211"
/EC_number="3.4.22.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858314.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="alpha-tubulin-specific protease"
/protein_id="WP_001195011.1"
/translation="MQTSNITNYERNDSSWMSTVKSTTEVSWNKLSFCDVLLKIITFG
IYSPHETLAEKYSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
CCTSIIPNDDYFSVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
LGINEFIDSKKELQMLSYNQVNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
FAIISPDV"
gene complement(169389..170083)
/locus_tag="SDY_RS24115"
CDS complement(join(169389..169837,169837..170083))
/locus_tag="SDY_RS24115"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS1-like element IS1N family transposase"
/protein_id="WP_087786203.1"
/translation="MASVNIHCPRCQSAQVYRHGQNPKGHDRFRCRDCHRVFQLTYTY
EARKPGIKELITEMAFNGAGVRDTARTLKIGINTVIRTFKKLTPKRITSSPVAHADVA
LICELDEQWSFVGSKARQHWLWYAYNTKTGGVLAYTFGPRTDETCRELLALLTPFNIG
MITSDDWGSYGREVPKDKHLTGKIFTQRIERNNLTLRTRIKRLARKTICFSRSVEIHE
KVIGTFIEKHMFY"
gene 170357..173665
/gene="icsA"
/locus_tag="SDY_RS24120"
/old_locus_tag="SDY_P214"
/gene_synonym="virG"
CDS 170357..173665
/gene="icsA"
/locus_tag="SDY_RS24120"
/old_locus_tag="SDY_P214"
/gene_synonym="virG"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858315.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="outer membrane autotransporter IcsA"
/protein_id="WP_001071790.1"
/translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGAFLL
LGGPIAFAIPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
LSIINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTA
GVIVNKGATLNLSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEIAGHASGITYVAVTNEG
GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
YMDAWLQYGWFNNTVKGNGLTGEKYSSKGITGALEVGYIYPTIRWTAHNNIDNALYLN
PQVQITRHGVKANDYIEHNGTMVTSSGVNNIQAKLGLRTSLISQSCIDKETLRKFEPF
LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
YRDTQGILGVKYTF"
gene complement(173891..175119)
/locus_tag="SDY_RS24125"
/old_locus_tag="SDY_P215"
CDS complement(join(173891..174804,174804..175119))
/locus_tag="SDY_RS24125"
/old_locus_tag="SDY_P215"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558215.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3-like element IS2 family transposase"
/protein_id="WP_088895425.1"
/translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS
QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE
YGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDV
LLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVP
PSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFN
SETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRS
PESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREY
LRQRACNGLSDNRCLEI"
gene <175195..>175296
/locus_tag="SDY_RS25790"
/pseudo
CDS <175195..>175296
/locus_tag="SDY_RS25790"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019842854.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0015473 - fimbrial usher porin activity
[Evidence IEA]"
/GO_process="GO:0009297 - pilus assembly [Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="fimbria/pilus outer membrane usher protein"
gene <175298..175876
/locus_tag="SDY_RS24135"
/old_locus_tag="SDY_P217"
/pseudo
CDS <175298..175876
/locus_tag="SDY_RS24135"
/old_locus_tag="SDY_P217"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612086.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3-like element IS629 family transposase"
gene complement(<175915..>176055)
/locus_tag="SDY_RS24140"
/pseudo
CDS complement(<175915..>176055)
/locus_tag="SDY_RS24140"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000952428.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS21 family transposase"
gene <176051..>176206
/locus_tag="SDY_RS24145"
/old_locus_tag="SDY_P218"
/pseudo
CDS <176051..>176206
/locus_tag="SDY_RS24145"
/old_locus_tag="SDY_P218"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000907654.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS110 family transposase"
gene 176278..176538
/locus_tag="SDY_RS24150"
/old_locus_tag="SDY_P219"
CDS 176278..176538
/locus_tag="SDY_RS24150"
/old_locus_tag="SDY_P219"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000078110.1"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication regulatory protein RepA"
/protein_id="WP_000078111.1"
/translation="MSQIENAVTSSPKRIYRKGNPLTGAEKQRISVSRKKGTHKAINV
FIQSELKDDLTQLCKDSGLTQKEMIEHWILKEKAAVDDANRR"
gene 176773..176847
/gene="tap"
/locus_tag="SDY_RS24155"
CDS 176773..176847
/gene="tap"
/locus_tag="SDY_RS24155"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001370046.1"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/GO_process="GO:0031556 - transcriptional attenuation by
ribosome [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RepA leader peptide Tap"
/protein_id="WP_001365705.1"
/translation="MPGKVQDFFLCSLLLRIVSAGWCD"
gene 176840..177697
/gene="repA"
/locus_tag="SDY_RS24160"
/old_locus_tag="SDY_P220"
CDS 176840..177697
/gene="repA"
/locus_tag="SDY_RS24160"
/old_locus_tag="SDY_P220"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858393.2"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="incFII family plasmid replication initiator
RepA"
/protein_id="WP_000131021.1"
/translation="MTDLQQTYYRQVKNPNPVSTPREGARTLPFCGKLMEKAVGFTSR
FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
LATESDAGTLSITRATRALTFLAELGLITYQTEYDPLIGCNIPTDITFTPALFAALDV
SEEAVASARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
YSRLATASP"
gene 178320..178718
/locus_tag="SDY_RS24165"
CDS 178320..178718
/locus_tag="SDY_RS24165"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014526575.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_223808086.1"
/translation="MALSACFRQQLNPVVNSLLKERIIHSPKELEHDYAVIRTLQKLQ
IQEVCNNTFWETAKQQLIQKPDGRYFAINSKQLAFPGSGESHAFCCIKYKNAIGINGN
NAENHSTHYQPYPHDKVSIWGPFPEPDLAI"
gene <178791..>178990
/locus_tag="SDY_RS24170"
/pseudo
CDS <178791..>178990
/locus_tag="SDY_RS24170"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000080195.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family transposase"
gene complement(179127..179819)
/gene="ospZ"
/locus_tag="SDY_RS24175"
/old_locus_tag="SDY_P221"
CDS complement(179127..179819)
/gene="ospZ"
/locus_tag="SDY_RS24175"
/old_locus_tag="SDY_P221"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000625270.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector cysteine
methyltransferase OspZ"
/protein_id="WP_000625266.1"
/translation="MISPIKNIKNVFPINTANTEYIVRNIYPRVEHGYFNESPNIYDK
KYISGITRSMAQLKIEEFINEKSRRLNYMKTMYSPCPEDFQPISRDEASTPEGSWLTV
ISGKRPMGQFSVDSLYHPDLHALCELPEISCKIFPKENSDFLYIIVVFRNDSPQGELR
ANRFIELYDIKREIMQVLRDESPELKSIKSEIIIAREMGELFSYASEEIDSYIKQMND
RLSQIKARMPVT"
gene <179875..180027
/locus_tag="SDY_RS24180"
/old_locus_tag="SDY_P222"
/pseudo
CDS <179875..180027
/locus_tag="SDY_RS24180"
/old_locus_tag="SDY_P222"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477168.1"
/GO_process="GO:0015074 - DNA integration [Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(180309..180446)
/locus_tag="SDY_RS24185"
/old_locus_tag="SDY_P223"
CDS complement(180309..180446)
/locus_tag="SDY_RS24185"
/old_locus_tag="SDY_P223"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011378983.1"
/translation="MTTTELFWDLNAIKWLVEGRGDDVSPFENIPVPDLTYNKEAWQF
G"
gene 181408..182355
/gene="icsP"
/locus_tag="SDY_RS24190"
/old_locus_tag="SDY_P224"
CDS 181408..182355
/gene="icsP"
/locus_tag="SDY_RS24190"
/old_locus_tag="SDY_P224"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858404.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="omptin family outer membrane protease IcsP"
/protein_id="WP_011378982.1"
/translation="MKLKFLVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
DKDWNNSNTPQIWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
FNAMGGSYIYSENGGNRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
KYSGWVRSSDTDKHYQTETIFKDEIKNQNYRSVAANIGYYVTPSAKFYIEGSRNYISN
KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
CONTIG join(CP000035.1:1..182726)
//
