KEGG   Rhizobium gallicum bv. gallicum: RGR602_CH02484
Entry
RGR602_CH02484    CDS       T03539                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rga  Rhizobium gallicum bv. gallicum
Pathway
rga03030  DNA replication
rga03410  Base excision repair
rga03420  Nucleotide excision repair
rga03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RGR602_CH02484 (ligA)
   03410 Base excision repair
    RGR602_CH02484 (ligA)
   03420 Nucleotide excision repair
    RGR602_CH02484 (ligA)
   03430 Mismatch repair
    RGR602_CH02484 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rga03032]
    RGR602_CH02484 (ligA)
   03400 DNA repair and recombination proteins [BR:rga03400]
    RGR602_CH02484 (ligA)
Enzymes [BR:rga01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RGR602_CH02484 (ligA)
DNA replication proteins [BR:rga03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RGR602_CH02484 (ligA)
DNA repair and recombination proteins [BR:rga03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RGR602_CH02484 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RGR602_CH02484 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     RGR602_CH02484 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RGR602_CH02484 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Lar_restr_allev HHH RNA_ligase
Other DBs
NCBI-ProteinID: AJD41809
UniProt: A0A0B4X1I9
Position
complement(2459406..2461562)
AA seq 718 aa
MPTESVAVEDLTIDDAATELARLAKEVAHHDALYHGKDQPEISDADYDALKRRNDAIEAR
FPELIRQDSPSRRVGAAPSVTFAPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPNQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIKEIPNELPKGVPAV
VEVRGEVYMAKSDFMALNKQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSDMPADAQFDMVQLFRDWGFPVNPLMKRLNSVADILAHYDEIGLKRPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTTVEKIEIQVGRTGALTPVARLTPVTV
GGVVVTNATLHNEDYIKGLGNSGEPIRDEEHDIRVGDTVIVQRAGDVIPQVLDVVMEKRP
ADAVPYEFPKRCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFESDEEALRIRTAPDIFTLERRQQNSLTKLENIEGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFAAAMKEAAPLSGDAWNDLNAIE
GIGEIVARAIVEFYKEPRNVEVISALLSEVTPQEAELPVTSGSPVSGKTVVFTGSLEKFT
RDEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIRG
NT seq 2157 nt   +upstreamnt  +downstreamnt
atgccgaccgagtccgttgcagttgaagacctgacgatcgatgatgccgccaccgagctc
gcgcggctggcaaaagaggtcgcccatcacgacgcgctctatcatggcaaggatcagccg
gagatttcggacgccgattacgatgcgctgaaacggcgcaacgatgcgatcgaggcgcgg
tttccggagctgatccgccaagacagcccgtcgcgccgcgtcggcgctgcaccttcggtg
acctttgcgccggtcgtccatgcgcgcccgatgctgtcgctcgacaatacgttttcccaa
gaggacgtgcaggattttgtggcgggcgtctatcgcttcctcgggcgcctgccgaaccag
tcgatcgcctttaccgccgaaccgaagatcgatgggctctccatgtcgatccgttacgag
aacggcaggctggtgacggctgcaacgcgcggcgacggcacgacgggcgagaatgtcacg
gcgaatatccgcaccatcaaggagattccgaacgaactgccgaagggggtgccggccgtc
gtggaagtgcgcggtgaagtctacatggcaaagagcgacttcatggcgctcaacaagcag
atggaggccgagggaaagcagacctacgtcaacccgcgcaacacggcagccggatcgctg
cgccagctcgacgcgaaggtgacggcaagccgcaagctgaaatttttcgcctacgcctgg
ggcgaaatgtccgacatgccggccgacgcgcaattcgacatggtacagctcttcagggac
tggggctttccggtcaatccgctgatgaagcggctgaattccgtagccgacatcctcgcc
cattacgacgagatcggcctgaagcgccccgacctcgactacgatatcgacggcgtcgtc
tataaggtcgacagccttgaactgcagcagcgccttggcttccgctcgcgcagcccgcgc
tgggcgacggcgcataaattcccggcggaacaggctttcaccaccgttgagaaaatcgag
attcaggtggggcgtaccggtgcgttgacgcccgttgcgcggcttacgcccgtcaccgtc
ggcggtgtggtagtgacaaacgcgacgcttcacaacgaggattacatcaagggtctcgga
aactccggtgagcccattcgcgacgaagagcacgatatccgggtcggtgataccgtaatc
gtgcagcgggctggcgacgtcatcccgcaagtgctcgatgtcgtcatggaaaagcggccg
gcggacgcggtaccctacgagtttccgaagcgctgcccggtctgcggttcgcatgcggtg
cgcgaaagaaacgagaaaaccggaaagctcgattcggtcacgcgctgcaccggcggcttc
gtgtgccgggcgcaggcaaccgagcatctcaagcattttgtctcgcgcaatgccttcgat
atcgagggcctgggatcgaagcagatcgacttcttcttcgagagcgacgaggaggcactg
aggatccgcacggcgccggatatcttcacgctggagcggcgccagcagaattcgttgacg
aagctcgaaaatatcgaaggcttcggcaaggtcagcgtcggcaagctttatgcggcgatc
aacgaacggcgcagcatcgcacttcaccgcttcatctacgcgctgggcattcgccatgtc
ggcgagacgacggcgaagctgctggcgcgctcctatggcacctacgaggcttttgccgcg
gcgatgaaggaggccgcgccactctccggcgatgcctggaacgacctgaacgccatcgaa
ggcatcggtgagatcgtcgcccgcgcgatcgtggagttttacaaggagccgcgcaatgtc
gaggtcatctcggcactgctttcagaagtgacgccgcaggaggcggagctgccggtcacc
tccggcagcccggtttccggcaagacggtggtcttcaccggctcgctcgagaagttcacc
cgcgacgaggccaaagccaaagccgagagccttggcgcaaaggtcgccggatcggtctcc
aagaagaccgatatcgtcgttgccggacccggtgcgggctcgaagctcgacaaggcgcgc
gagctgggcgtccagaccatggatgaggacgagtggcttgcgctgatccgtggatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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