KEGG   Mediterraneibacter gnavus: RGna_04315
Entry
RGna_04315        CDS       T06719                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
rgn  Mediterraneibacter gnavus
Pathway
rgn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rgn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RGna_04315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rgn03019]
    RGna_04315
   03016 Transfer RNA biogenesis [BR:rgn03016]
    RGna_04315
Enzymes [BR:rgn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     RGna_04315
Messenger RNA biogenesis [BR:rgn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RGna_04315
Transfer RNA biogenesis [BR:rgn03016]
 Prokaryotic type
  tRNA degradation factors
   RGna_04315
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KhpA-B_KH DUF1773 KH_5
Other DBs
NCBI-ProteinID: QHB22772
Position
complement(827651..829741)
AA seq 696 aa
MYKKFEMELAGRTLRVDVDRVAKQANGAVLMHYGDTTVLCTATASEKPRDGIDFFPLSVE
YNERLYAVGKIPGGFNKREGKASENAILTCRVIDRPMRPLFPKDYRNDVTLENLVMSVDQ
DCSPELTAMLGAAIATSISDIPFDGPISTTQVGLVDGEFVFNPTAAQKEVSDLALTVAST
KEKVIMIEAGANEVPEAQMIEAIFAAHELNQKVIAFIETIVAECGKAKHEYTSCAVPEEL
FEAIKEIVPPAEMEEAVFTDDKQTREENIRVITEKLEEAFAENEEWLAVLGEAVYQYQKK
TVRKMILKDHKRPDGRAIDQIRPLAAETDLIPRVHGSAMFTRGQTQICTVTTLAPLSEAQ
RIDGLDEAETSKRYMHHYNFPSYSVGETKPSRGPGRREIGHGALAERALLPVLPSEAEFP
YAIRTVSETFESNGSTSQASVCASSMSLMTAGVPIKAAVAGISAGLVTGETDDDYLVLTD
IQGLEDFFGDMDFKVAGTHKGITAIQMDIKIHGLTRPIIEEAIAATKKARTYILDEVMNK
AIAEPRKEVGTYAPKIIQMQIDPQKIGDVVGQRGKTINAIIEQTGVKIDITDDGAVSICG
TEKEAMEKAAKLIATIVTDFEAGQLFEGKVISIKEFGAFLEFAPGKEGMVHISKISKERV
NKVEDVLNIGDVVKVVCLGKDKMGRFSFSMKDVAED
NT seq 2091 nt   +upstreamnt  +downstreamnt
atgtataagaaatttgagatggaacttgccggcagaactctgcgcgtggatgttgacaga
gtggcaaagcaggcaaatggtgcggttttgatgcactacggagatactacagttctctgt
actgcgacagcatctgagaagccaagagacgggattgactttttcccgctgagtgtagag
tacaatgagagactttatgcagtcggaaagattccgggaggattcaacaaaagagaagga
aaggcttctgagaatgcaattttaacatgtcgtgtcattgacagaccgatgcgtcctctg
ttcccgaaggattacagaaatgacgtgacattggagaatctggttatgtctgttgatcag
gactgcagtccggaactgacagcaatgcttggtgcggcgattgccacaagtatttcagat
attccgtttgacggaccgatctctacgactcaggttggtctggttgacggagaatttgta
ttcaacccgacagcagcacagaaagaagtatcggatctggcgctgacagttgcatctaca
aaagagaaagtaatcatgatcgaagccggagcaaatgaagttccggaggctcagatgatc
gaggctatttttgcggcacatgaactgaaccagaaagtcatcgcatttattgagacgatc
gtggcagaatgcggaaaagcaaaacatgaatatacaagctgcgcggttccggaagaactg
tttgaggcgattaaagagatcgttccaccggcagagatggaagaagcagtctttacagat
gacaaacagacaagagaagaaaatatccgtgtcattacagaaaaactggaagaggcattt
gcagagaacgaagaatggctggcagtgttaggggaagcagtttatcagtatcagaagaag
actgtcagaaagatgatcttaaaagatcacaaacgtccggacggacgtgcgatcgatcag
attcgtccgctggcagcagagacagacctgatcccgagagttcatggatctgcgatgttt
acaagaggacagactcagatttgtacagtgacaacactggcacctctttcagaagcacag
agaatcgacggactggatgaggcagagacttccaagagatatatgcaccactacaatttc
ccgtcttattctgttggagagacaaaaccatccagaggaccgggacgtcgtgagattggt
cacggtgcactggcagagagagcactccttccggtacttccaagcgaggcagagttcccg
tatgcgattcgtacggtatctgagacatttgaatcgaatggttctacttctcaggcaagc
gtatgtgcgtccagtatgtcactgatgacagcaggtgtgccgatcaaggcagctgttgcc
ggaatttcagcaggtctggtgacaggagagacagacgatgattatctggttcttacagat
atccagggactggaagatttcttcggagatatggactttaaagtggctggtacacacaag
ggtatcacagcgatccagatggacattaagatccacggactgacaagaccaatcattgaa
gaagcaatcgcagcgacaaagaaagcaagaacttacattctggatgaagtgatgaataaa
gcaattgcagaacctagaaaagaagtgggaacttatgcaccgaagattattcagatgcag
atcgacccacagaagatcggcgatgttgtcggacagagaggaaagacgatcaatgcgatc
atcgagcagactggagtgaagatcgatatcacagacgatggagcagtttctatctgcggt
acagaaaaagaagcgatggaaaaagcagcgaagctgatcgcaacgatcgtaacagatttt
gaagcaggacagctttttgaaggaaaagtaatcagcatcaaagaattcggagcatttctt
gagtttgcacctggaaaagaaggaatggttcatatttccaagatctccaaagagagagtc
aacaaggtagaagatgttctgaacattggagatgttgtgaaggttgtatgccttggaaaa
gataaaatgggaagattcagcttcagcatgaaagatgttgcagaagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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