KEGG T06065: 113561015

Rhopalosiphum maidis (corn leaf aphid): 113561015

Entry

113561015         CDS       T06065

Name

(RefSeq) collagen alpha-1(V) chain-like

K19721

collagen type V/XI/XXIV/XXVII, alpha

Organism

rmd Rhopalosiphum maidis (corn leaf aphid)

Pathway

rmd04820

Cytoskeleton in muscle cells

Brite

KEGG Orthology (KO) [BR:rmd00001]
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    113561015
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rmd00536]
    113561015
Glycosaminoglycan binding proteins [BR:rmd00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   113561015

SSDB

Motif

Pfam:

Collagen COLFI Laminin_G_3 Laminin_G_2 Glyco_hydro_59_C Laminin_G_1

Other DBs

NCBI-GeneID:

113561015

NCBI-ProteinID:

XP_026822984

Position

4:complement(12406652..12488398)

AA seq 1656 aa
MARTPVVVFALIAAIGLLRNADAADRWARAADRTTKNGFSILEATNIAEQNVGVSVTSGR
CANDKAYKLNERAILSIETSQIFPEFQQFPLDFSILAEIRTDQGSDTNRVFLIYNEAGDE
QLGLTVGSDIMLFYNDMEAHEGYKTKIKFNTIINDNRWHKLLFSIKGDSVTMILDCDKQV
TKELKRNTTISNSGIVMIGQQLDETFYLGDIQELRFYSTPDAAYEMCSVGMDVCIETQNK
TETSKTNVMDVNEFEELSTSDMNSLEITSVTHSPRSSDTNISQTAYGVQQPQCMSAVRGY
PGPPGEQGPQGPKGDPGRDGIDGYAGKQGPPGHVFLIPLNQNQGDKGPDSQAEIFRQMLA
QHMLSMRGVDGPMGMTGVVGPEGPPGPEGPKGESGEQGEVGPRGIRGMPGPSGRDGHRGR
PGRDGERGVTGPPGVKGEPGVTGAMGLPGEKGDRGLPGQVGVTGPRGNDGPQGEEGPQGL
AGLPGEMGPRGFSGLRGFPGSPGPPGVPGSEGPAGPKGNTGNTGIPGPPGQIGPAGPIGS
TGAIGALGPPGDQGPPGKPGLPGLPGADGLPGHPGNAGAVGIKGDTGPIGSPGPVGFSGT
RGVKGDIGVRGPMGEKGDKGDRGSDGEKGDQGLKGEPGLAGSPGLVGIEGPEGPKGSEGP
HGESGAIGLSGEKGKPGPAGLPGYPGAPGEKGDKGAYGKDGISGEKGERGNTGLPGERGE
TGPRGFRGARGREGSEGIPGPKGDTGQPGPTGAPGERGIPGADGLRGFVGPTGAPGISGK
DGLPGFPGERGPPGDTGPIGVTGIPGVVGPPGQSGEIGSIGEPGPSGQPGLPGEAGRPGD
AGKEGLPGPVGLPGKSGEPGSPGLQGFPGDRGFPGVPGAAGLKGDTGPPGPVGSTGDKGQ
QGESGKEGPQGAEGRKGPTGTPGAVGLKGDKGEIGLSGPMGNDGMVGARGVPGPPGPVGP
PGEDGDKGEIGVPGEKGFKGSKGETGPVGALGNPGLRGEPGPVGVPGEKGPIGEIGRQGA
KGEEGSIGIAGPPGLPGTQGIPGPIGPKGEPGDIGAKGPVGQPGAAGEIGPRGFKGVDGQ
YGPAGADGPTGPKGEPGVIGPPGPQGLDGKHGERGPMGAKGDDGKIGTQGPIGPRGNIGP
EGPKGNAGVPGFPGTQGEPGIQGPKGDRGRDGDDGKIGAPGPPGEIGPPGNPGIVGPPGR
TGNEGPSGPQGSSGLPGEKGDQGLIGGTGLPGPIGISGTPGAQGPQGPIGSPGLAGEVGL
PGRPGKDGEPGKTGEIGPPGEKGERGKRGPKGHPGEIGPMGIKGHEGEKGDKCERGDRGS
EGQKGEMGPIGLIGTKGNDGPVGLPGVEGFPGPKGIEGVAGNKGEQGSPGPPGPPGPPGE
LPMLPPELAGFQQNALARWKREFNDVNTEDGTKSKTSNSGQSDNSDGPKYIDIVSSIYSM
RQDLERIRKPVGTRDNPVMTCKDLFYGHPQFKDGWYWIDPNLGMPYDAVYVYCNMSSGGE
TCVFPDIHSSQMPNIPWRKEGDKTDWYSNLRGGFKITYETVGPVQMNFLRLLSQNGYQNF
TYTCINSAAWFNAKSNSYDMAVKFMGENSVQFSSEQGSPKVDVLVDGCKTRKSKSETVFE
IRTNKLDSLPLTDFYPVDYGLPHQAFGFEVGPVCFK

NT seq 4971 nt +upstreamnt +downstreamnt
atggcccgaacgcccgtcgtggtttttgcactgatcgcggccatcggtctgctgcgaaac
gcggacgcggcggatcgctgggcacgggccgctgacaggacgacgaaaaacggttttagc
attttggaagcaacaaatatcgccgaacaaaacgtgggcgttagcgtcactagtggccgt
tgtgctaacgacaaggcgtacaaacttaacgaaagagcgattttaagtatagagacgtct
cagatatttcccgagttccaacaatttcctttagatttttcaatattagccgagatcaga
actgaccaaggttccgatacgaacagagtttttctcatttacaatgaagcaggagatgaa
cagttgggattgacagttgggagtgacattatgttgttttataacgacatggaagcccac
gaaggatataagaccaaaataaaatttaatactatcattaacgataatcggtggcataaa
ttattgttcagtattaaaggagattcagtgactatgattttggactgtgataaacaagtc
acaaaagaacttaagagaaatacaacaattagcaattcaggaatagtgatgattggtcaa
caattagatgaaacgttttacctgggtgacattcaagagttaaggttttattcaacgcca
gatgctgcttatgaaatgtgttccgttgggatggatgtctgtattgaaacgcagaataaa
accgaaacatcaaaaaccaacgtgatggacgtaaatgaatttgaagaactttctacgtcc
gacatgaattcattggaaataacgagtgttacgcatagcccaagatcgtccgatacaaac
atcagtcagaccgcgtatggtgtacagcaacctcagtgcatgtcggcagttcgtggttat
cccggtccacctggagagcaagggccccaaggtccgaaaggagatcctggccgcgatggc
atagacgggtatgctggtaaacaaggacctccgggacacgtgtttctaataccactgaat
caaaatcagggggataaaggtccggatagccaagctgaaatattcagacaaatgttggca
caacacatgttatcaatgagaggagttgatggaccaatgggtatgactggagtagtggga
ccagaaggtccacctggtcccgaaggacctaaaggagagtctggagaacaaggagaagtg
gggccaagaggtattagagggatgcctggtccatcaggtcgtgatggacacaggggtaga
ccgggcagagatggagaacgaggagttacaggtccacctggagtcaaaggagagcccgga
gtaacgggagcaatgggattacctggagaaaaaggagatcgtggacttccaggtcaagtt
ggtgttacaggccctcgtggtaatgatggtcctcaaggtgaagaagggcctcaaggttta
gctggcttacccggagaaatgggacctagaggattttctggtctgcgcggatttcccggt
tcacctggtcctccaggagttccaggatcagaaggacctgcaggtcctaagggtaacact
ggaaatactggaattcctggaccacctggtcagattggtcctgctggtcccattggctcc
actggagcaataggtgctttaggtcctcctggagatcaaggacctccgggaaaaccagga
ttgccaggattaccaggagccgatggactacctgggcaccccggaaatgcaggcgctgtg
ggaatcaaaggagatacgggaccaattggatcaccgggtcccgtagggttttccggaaca
cgtggtgtaaaaggtgacataggcgttcgtggtccaatgggagaaaaaggagacaaagga
gacagaggatccgacggagaaaaaggagatcaaggactcaaaggagagccaggattggct
ggatcaccaggtttagttggaattgaaggtccagaagggccaaaaggatctgaaggacct
catggtgaaagtggtgcaattggattatcaggtgagaaaggtaaaccaggacccgccggg
cttccaggatatcccggtgctccgggtgaaaaaggtgacaaaggagcatatggtaaagat
ggaatttctggtgaaaagggagaacgaggaaacactggattaccaggagaaagaggagaa
actggacctagaggattcagaggtgctagaggacgtgaaggatctgaaggaattccggga
ccaaagggtgatactggacaacctgggcctactggggcacctggagaacgtggaataccg
ggtgcggatggattaagaggatttgtcggccctacaggcgccccaggaattagtggaaaa
gatggtttacctggatttccaggagaaagaggtccaccaggtgacacgggacccataggt
gttactggaatacccggagtcgtcgggccaccaggtcaatcaggcgaaataggctctatt
ggagaaccagggccatcaggtcaaccgggtttaccaggagaagcaggaagaccgggcgac
gcaggaaaagaaggacttccaggcccagttggtttgcctggaaaatcaggtgaacctggt
tcaccaggattgcaaggatttcctggtgatagaggatttcctggagtacctggagcagct
gggctaaaaggtgacacaggacctccaggccctgttggctcaactggagataaaggacaa
caaggtgaatctggcaaagaagggccacagggtgcagaaggacgcaaaggacctacaggt
acaccaggtgcagtgggtttgaaaggagataagggtgaaatcggactttctggtccaatg
ggaaacgatggaatggtgggagcacgaggcgttccaggaccaccagggcccgttggacca
ccaggagaagacggagataaaggtgaaatcggcgttcccggagaaaagggattcaaaggt
tcaaaaggggaaacgggtccggtcggagcattaggaaatccaggattaagaggagaacca
ggaccagttggggtgccaggagaaaaaggtccaatcggtgaaattgggagacaaggagct
aaaggagaagaagggtctattggaattgcaggaccacctggactaccagggacacaaggt
atcccaggaccaattggaccaaaaggcgagcctggggacattggcgccaaaggtcccgtc
ggacaacctggagcagctggtgaaatcggccccagaggatttaaaggtgttgacggacag
tatggtccagcgggtgcagacgggccgacaggacctaaaggtgagccaggtgtaattgga
ccacctggtccacagggtcttgatggaaaacacggcgaacgcggtccaatgggtgcaaaa
ggagatgacggaaaaatcggaacgcaaggaccaataggaccaagaggtaacattggacca
gaaggaccaaaaggtaatgcaggtgttcctggatttccaggaactcaaggtgaacccggt
attcaaggtccaaaaggcgacaggggtcgagacggtgatgatggaaaaataggtgctcca
ggacctccaggtgaaattggcccacccggtaatccaggtatcgtgggtcctccaggacga
actggaaacgaaggtccatcaggacctcaaggaagttcaggattacctggagaaaaaggc
gatcaaggtttaatagggggtacaggtttacccggacctattggaatatcaggtactcct
ggtgcacagggacctcaaggaccaataggttcacctggcttagcgggtgaagttggttta
ccgggaagaccagggaaagacggagaaccaggaaaaactggtgaaattgggcctcctggt
gaaaaaggagaaagaggaaaacgtggaccaaaaggtcatcctggagaaataggtccaatg
ggcatcaaaggtcacgaaggcgagaaaggtgacaagtgtgaacgaggagatcgaggatct
gaaggacaaaaaggagaaatgggtcccattggattaataggaactaaaggcaatgatggt
ccagttggacttccaggtgttgaaggttttcccggtcctaaagggattgaaggagtagct
ggaaacaagggtgaacaaggatctccaggaccaccaggtcctccaggaccaccgggtgaa
ttaccgatgttaccacctgaattggcaggctttcagcaaaacgctttggcacgatggaag
cgggaattcaatgacgtcaacacagaagacggtacaaaatcaaaaaccagtaattcggga
caaagtgacaatagcgatggcccaaaatacatagatattgttagttcaatttacagtatg
agacaagacttggaaagaataagaaagcccgtcggaacccgcgataacccggttatgaca
tgtaaggatttattttacgggcatccgcaatttaaagatggatggtattggattgacccg
aacttgggtatgccatacgacgccgtgtacgtgtactgtaacatgagtagcggaggagaa
acgtgcgtgtttcccgacatacactcaagtcaaatgccgaacatcccgtggcgtaaggaa
ggcgacaagacggactggtattcaaatctcaggggcggtttcaaaattacttacgaaacg
gtgggaccagtgcaaatgaacttcctacgattgctcagccaaaatggataccaaaacttc
acatacacgtgcatcaacagtgctgcgtggttcaatgcaaaatccaactcgtatgacatg
gccgtaaagtttatgggagagaattcggtgcagttttcatctgaacaaggatcgcccaaa
gtagacgtgttagtcgacggttgcaaaacgagaaaatcaaaaagtgaaaccgtatttgag
atccgtaccaataaattagacagtctgccgttgacagatttctatcctgtggactatggg
ttaccacatcaagcattcggattcgaagtgggacccgtgtgcttcaaatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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