KEGG   Rattus norvegicus (rat): 117526
Entry
117526            CDS       T01003                                 

Gene name
Tbp, TFIID
Definition
(RefSeq) TATA box binding protein
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05165  Human papillomavirus infection
rno05166  Human T-cell leukemia virus 1 infection
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    117526 (Tbp)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    117526 (Tbp)
  09164 Neurodegenerative disease
   05016 Huntington disease
    117526 (Tbp)
   05017 Spinocerebellar ataxia
    117526 (Tbp)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    117526 (Tbp)
   05165 Human papillomavirus infection
    117526 (Tbp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    117526 (Tbp)
   03021 Transcription machinery [BR:rno03021]
    117526 (Tbp)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    117526 (Tbp)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     117526 (Tbp)
  RNA polymerase III system
    TFIIIB
     117526 (Tbp)
  RNA polymerase I system
    SL1/TIF-1B
     117526 (Tbp)
SSDB
Motif
Pfam: TBP EPL1 Spt20 TFIIA Cnd2 Presenilin
Other DBs
NCBI-GeneID: 117526
NCBI-ProteinID: NP_001004198
RGD: 67398
Ensembl: ENSRNOG00000001489
UniProt: Q66HB1
Position
1q12
AA seq 318 aa
MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPVQNTNSLSILEEQQRQQQ
QQQQQQQQQQQQAVATAAASVQQSTSQQPTQGASGQTPQLFHSQTLTTAPLPGTTPLYPS
PMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVI
MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS
CDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI
YEAFENIYPILKGFRKTT
NT seq 957 nt   +upstreamnt  +downstreamnt
atggaccagaacaacagccttccaccttatgctcagggcttggcctccccacagggtgcc
atgactcctggaattcccatcttcagtccaatgatgccttacggcacagggcttactcca
cagcctgttcagaacaccaatagtttatctattttggaagagcaacaaagacagcagcag
cagcagcagcagcagcaacagcagcagcaacagcaggcagtagcaactgcagcagcctca
gtacagcaatcaacatctcagcagcccacacagggtgcctcaggccagaccccacaactc
ttccattctcaaactctaaccacagcaccattgccaggcaccacccccttgtatccttca
ccaatgactcctatgacccctatcactcctgccacaccagcctctgagagctctgggatt
gtaccacagctccaaaatattgtatccaccgtgaatcttggctgtaaacttgacctaaag
accattgcacttcgtgccagaaatgctgaatataatcccaagcggtttgctgcagtcatc
atgagaataagagagccacgaacaactgcgttgatcttcagttctgggaaaatggtgtgc
acaggagccaagagtgaagaacaatccagactagcagcaagaaaatacgctagagttgtg
cagaagctgggcttcccagctaagttcttagacttcaagatccagaacatggtggggagc
tgtgatgtgaagttccccataaggctggaaggccttgtgttgacccaccagcagttcagt
agctatgagccagaattatttcctggattaatctacagaatgatcaaacccagaattgtt
ctccttatttttgtttctggaaaagttgtattaacaggtgctaaagttagagcagagatt
tatgaagcatttgaaaacatctaccccatcttaaagggattcaggaagaccacatag

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