KEGG   Rattus norvegicus (rat): 287524
Entry
287524            CDS       T01003                                 
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
  KO
K07466  replication factor A1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03030  DNA replication
rno03420  Nucleotide excision repair
rno03430  Mismatch repair
rno03440  Homologous recombination
rno03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    287524 (Rpa1)
   03420 Nucleotide excision repair
    287524 (Rpa1)
   03430 Mismatch repair
    287524 (Rpa1)
   03440 Homologous recombination
    287524 (Rpa1)
   03460 Fanconi anemia pathway
    287524 (Rpa1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    287524 (Rpa1)
   03032 DNA replication proteins [BR:rno03032]
    287524 (Rpa1)
   03400 DNA repair and recombination proteins [BR:rno03400]
    287524 (Rpa1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    287524 (Rpa1)
DNA replication proteins [BR:rno03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    287524 (Rpa1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     287524 (Rpa1)
   MMR (mismatch excision repair)
     287524 (Rpa1)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     287524 (Rpa1)
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223 IBR
Other DBs
NCBI-GeneID: 287524
NCBI-ProteinID: NP_001380998
RGD: 1307376
Ensembl: ENSRNOG00000003123
Vega: OTTRNOG00000002080
Position
10:complement(60647185..60698279)
AA seq 614 aa
MVGHLSEGAIAAIMQQGDTSIKPVLQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNALVEGGQLASNCVCQVHRFIVNTLKDGRRVVILMDLEVVKSAGEVGVKIGNPVPYNE
GHAQQQAVSAPASAATPPASKPQPQNGSLGVGSTVAKAYGASKPFGKPAGTGLLQPTSGT
QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGHHLPTVQF
DFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTATL
WGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQNTVYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVIDVKPVDYR
DYSKRLIMNIRKNI
NT seq 1845 nt   +upstreamnt  +downstreamnt
atggtgggacacctgagcgagggggccattgcggccataatgcagcagggagatacatcc
ataaaacccgttcttcaagtcattaacatccgtcccattactacagggaatagtccaccg
cggtatcgactgcttatgagtgatgggttgaacacgctttcctccttcatgctggccacg
cagctgaacgccctggtcgaggggggccagctggccagcaactgtgtctgccaggtccac
cgcttcatcgtcaacaccctgaaggacggaaggagagtagttattttgatggacttggaa
gttgtgaaatctgctggcgaagttggagtaaagattgggaatccagtgccctataatgaa
ggacatgcgcagcagcaagcagtctctgccccagcctctgcagcgacaccaccagccagc
aagccccaaccgcagaatgggagcttgggagtgggttccactgtagctaaggcatacggg
gcctcaaagccgtttggaaagcctgctggaactggcctgctgcagcctacaagtgggaca
cagtccaaagtggtacccatcgccagcctcaccccttaccaatccaagtggacgatttgt
gcccgtgtcaccaacaaaagtcagatccgtacctggagcaattcccgtggggaaggaaag
ctcttctctatagaacttgtggatgaaagtggtgaaatcagagctacggctttcaatgag
caggtggacaagttctttccccttattgaagtgaacaaggtgtattacttctccaagggc
actctgaaaatcgctaacaaacagttctcagctgttaaaaatgactatgagatgaccttc
aataatgagacgtctgtccttccctgcgaagatggccatcacttacccacagttcagttt
gacttcacagggatcggtgacctagagagcaagtctaaagactcacttgtagacataatt
ggaatctgcaagagctatgaagatgcgactaaaatcacagtgaagtctaacaacagagaa
gttgctaagagaaatatctgtttgatggacatgtcagggaaagtggtgactgcgacgctg
tggggagaagacgctgacaagtttgacggttctaggcagcctgtgatggccatcaaagga
gcccgagtgtccgactttggtgggcggagcctctctgtcctatcatctagcactgtcctt
gtgaatcctgacatcccagaggcctataagctccgtggatggtttgactcagaaggacaa
gccttagatggagtttccatctctgatctcaggagtggagggaccggagggagcaacacc
aactggaaaactttgtatgaagctaaatccgagaacctgggccagggcgacaaggcggac
tatttcagcactgtggcaacagtggtgtttcttcgcaaagagaactgtatgtaccaggcc
tgcccgacccaggactgcaataagaaagtgattgaccagcagaatgggttgtaccgctgt
gagaagtgcgaccgggaatttcccaatttcaaataccgcatgatcttatcggtaaatatt
gcagattttcaggagaatcagtgggtgacgtgtttccaggagtccgcggaggccattctt
ggacagaacactgtgtaccttggggaactcaaagagaagaacgagcaggcgtttgaagag
gttttccagaatgccaacttccgatcatttacattcagaatcagagtcaagctggagacc
tacaatgatgaatctcgaattaaggccactgtgatagacgtgaagcccgtggactacaga
gactatagcaaaaggctgatcatgaacatcaggaagaacatttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (35)   

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