KEGG   Rattus norvegicus (rat): 305104
Entry
305104            CDS       T01003                                 

Gene name
Col9a1
Definition
(RefSeq) collagen type IX alpha 1 chain
  KO
K08131  collagen type IX alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04151  PI3K-Akt signaling pathway
rno04510  Focal adhesion
rno04512  ECM-receptor interaction
rno04974  Protein digestion and absorption
rno05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    305104 (Col9a1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    305104 (Col9a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    305104 (Col9a1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    305104 (Col9a1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    305104 (Col9a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:rno00535]
    305104 (Col9a1)
Proteoglycans [BR:rno00535]
 Extracellular matrix (ECM) proteoglycans
  Collagen family
   305104 (Col9a1)
SSDB
Motif
Pfam: Collagen Laminin_G_3
Other DBs
NCBI-GeneID: 305104
NCBI-ProteinID: NP_001094312
RGD: 1309425
Ensembl: ENSRNOG00000012920
UniProt: F1LQ93
Position
9q21
AA seq 934 aa
MVTLINPREPTGKMKNFWKIPLFFFACSFLGPCVSATPKRRARFPANSVSHGGSELCPKI
RIGQDDLPGFDLISQFQIEKAASRRTIQRVVGSTALQVAYKLGSNVDFRIPTRHLYPSGL
PEEYSFLTTFRMTGSTLEKQWNIWQIQDSSGREQVGVKINGQTKSVAFSYKGLDGSLQTA
AFLNLQSLFDSRWHKLMIGVERTRATLFIDCIQIDSLPIKPRAQIDADGFAVLGKLVDNP
QVSVPFELQWMLIHCDPLRPRRETCHELPVRITTSQTTDERGPPGEQGPPGPPGPPGVPG
IDGIDGDRGPKGPPGPPGPPGDPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPG
VPGSRGFPGRGIPGPPGPPGTTGLPGELGRVGPAGDPGKRGPPGPPGPPGPSGTIGFHDG
DPLCPNSCPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGA
QGLRGITGIVGDKGEKGARGFDGDPGPQGVPGAAGDQGQRGPPGETGPKGDRGIQGSRGI
PGSPGPKGDTGLPGVDGRDGIPGMPGTKGEAGKPGPPGDAGLQGLPGVPGIPGAKGVAGE
KGNTGPPGKPGQLGSSGKPGQQGPPGEVGPRGPRGLPGSRGPVGPEGSPGIPGKLGPLGS
PGLPGLPGPPGLPGMKGDRGVFGEPGPKGEQGASGEEGEAGVRGDLGDMGQPGPKGSVGN
PGEPGLRGPEGIRGLPGVEGPRGPPGPRGVQGEQGATGLPGIQGPPGRAPTDQHIKQVCM
RVVQEHFAEMAASLKRPDTGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGA
LGLRGPKGDLGEKGERGPPGRGPKGLPGAIGLPGDPGPASYGKNGRDGEQGPPGVAGIPG
VPGPPGPPGPPGFCEPASCTLQAGQRAFSKGPDK
NT seq 2805 nt   +upstreamnt  +downstreamnt
atggtgactcttataaacccaagagaacccactgggaaaatgaagaacttctggaaaatt
ccacttttcttctttgcatgcagttttctgggaccctgtgtatctgcaactcctaagcgt
cgtgcaagatttcctgccaattctgtttctcatggtggaagtgaactgtgtcccaagatc
aggattggccaggatgacttgccaggatttgacctgatttctcagttccaaattgagaag
gctgcatctcgaaggactatccagagggtggtggggtccacagcgttacaagtggcttac
aagctgggaagtaatgtagacttcaggattccaacaaggcatttgtatcccagtggactg
cctgaagaatattcctttttaactactttccggatgactggaagcacacttgaaaagcaa
tggaacatttggcagatccaggattcctcagggagggagcaagttggcgtgaagataaat
ggccaaacaaagtctgtcgcgttttcatacaagggactggacgggagtctccaaacggca
gccttcttgaatttgcagtccttgtttgactcccgttggcataagctcatgattggcgtg
gagagaacaagagctactctttttattgactgcatccagatcgattccttacctataaag
ccgagagcccagatcgatgctgatggctttgctgtgctgggaaaacttgtggacaatcct
caggtttctgttccctttgaactccagtggatgctgattcactgtgaccccctgagaccc
cggagagagacgtgccatgaactgccagtcagaatcacaaccagccagaccaccgatgag
agaggtcctccgggtgagcaggggcctccggggcctcccgggcctcctggagttccgggc
atagatggtattgatggtgaccgaggtccaaagggtccccccggacctccgggtcctcct
ggagacccgggcaagccaggagcaccaggcaagccaggcactccaggagctgatggatta
acaggacctgatgggtccccgggctccgttggaccaaggggacaaaaaggagaacctggt
gtgcctgggtctcgtggatttccaggccgtggcattccaggaccccctggccctcctggg
accacaggacttcctggagaacttggccgagtaggccctgctggcgaccctgggaaaaga
ggaccacctggtcctcctggacccccaggacctagtggaacaattggatttcatgatgga
gacccattgtgccccaattcctgcccaccaggtcgctctggctatccaggcctaccaggc
atgagaggccacaaaggggcgaaaggagaaattggcgagccaggaagacaaggacacaag
ggtgaagagggtgaccagggggaactgggagaagttggagctcaaggacctccaggagct
caaggtctgagaggcatcactggcatagttggagacaaaggagaaaaaggtgctcgggga
ttcgatggagatcctgggcctcagggcgttccaggtgcagctggtgatcaagggcagcga
ggacctccaggagaaacaggtcctaagggagacaggggcattcaaggttcccgaggaatt
cctggatccccgggtccaaaaggagacacgggcttgccaggtgtcgatggtcgagacgga
atcccgggaatgcctggaacaaagggtgaagcaggaaagcctggacctcccggtgatgcg
ggattgcagggtttaccgggtgtacctgggattcctggtgcaaaaggtgtggccggcgaa
aagggtaacacgggtcctccggggaagcctggtcagttgggaagttcaggaaaaccaggc
caacaaggaccgccgggagaggttggacctcggggacccaggggccttccaggcagcaga
ggcccggtaggaccagaaggctctccaggcataccagggaaactgggacctcttggcagc
cctggccttcctggcttgcctgggccccctggacttcctggaatgaaaggagacaggggt
gtatttggtgaaccaggtcccaagggcgaacagggtgcctctggtgaagaaggtgaagca
ggagtaaggggtgaccttggagatatgggacaacctggcccaaagggatcagtgggtaac
cctggggagcccggcctgaggggacctgaaggaatcagagggcttcctggagtggaagga
ccaagaggaccacctggaccccgaggtgtgcaaggagaacagggtgccactggactgcct
ggtatccagggacctccgggcagagcgccgacggaccagcacatcaagcaggtttgcatg
agagttgtgcaagagcattttgcagaaatggcagctagcctcaagagaccagacacagga
gcttctggtcttcctgggaggcctggtcccccagggcctcccggccctccaggagagaat
ggtttccctggtcagatgggaatccgtggccttccaggcattaagggtccccctggtgct
cttggcttaaggggacctaaaggtgacttgggagaaaaaggagaacgtggtcctccagga
agaggtcctaagggtttgcctggagctatcggtctcccaggtgatccaggccctgccagc
tatgggaaaaatggccgagatggagagcaaggtcccccaggagtggcaggaattcctggt
gtgcctgggcccccaggtcctccaggccctcctggtttctgtgagccagcctcttgcacc
cttcaggcaggtcaaagagcatttagcaaagggcctgacaagtga

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