KEGG   Rattus norvegicus (rat): 317335
Entry
317335            CDS       T01003                                 
Symbol
Ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform 1
  KO
K11594  ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04622  RIG-I-like receptor signaling pathway
rno05161  Hepatitis B
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    317335 (Ddx3x)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    317335 (Ddx3x)
  09172 Infectious disease: viral
   05161 Hepatitis B
    317335 (Ddx3x)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    317335 (Ddx3x)
   03041 Spliceosome [BR:rno03041]
    317335 (Ddx3x)
   03036 Chromosome and associated proteins [BR:rno03036]
    317335 (Ddx3x)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     317335 (Ddx3x)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     317335 (Ddx3x)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     317335 (Ddx3x)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    317335 (Ddx3x)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    317335 (Ddx3x)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-GeneID: 317335
NCBI-ProteinID: NP_001385680
RGD: 1564771
Ensembl: ENSRNOG00000023383
Position
X:complement(12152346..12165983)
AA seq 661 aa
MSHVAVENALGLDQQFAGLDLNSSDNQTGGSTASRRYIPPHLRNREATKGFYDKDSSGWS
SSKDKDAYSSFGSRGDSRGKSSFFGDRGSGSRGRFDDRGRGDYDGIGGRGDRSGFGKFER
GGNSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIES
FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ
IYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY
GGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI
RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVW
VEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE
EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA
TSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGSSRGRSKSSRFSGGFGARD
YRQSSGASSSSFSSSRASSSRSGGGGHGSSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWG
N
NT seq 1986 nt   +upstreamnt  +downstreamnt
atgagtcatgtggcagtggaaaatgcgctcgggctggaccagcagtttgctggcctagac
ctgaactcttcagataatcagactggaggaagtacagcaagcaggcgctatatccctcct
catttaaggaacagagaagctactaaaggattctatgacaaagacagttcagggtggagt
tctagtaaagataaagatgcatacagcagctttggatcccggggtgactcacgagggaag
tctagcttctttggtgatcgtggaagtggatcaaggggaaggtttgatgatcgtggacgg
ggagactatgatggcattggtggccgtggagataggagtggctttggcaaatttgaaaga
ggtggaaatagtcgctggtgtgataaatcagatgaagatgactggtcaaagccactccca
ccaagtgaacgcttggaacaggaactcttttctggaggcaatactgggattaactttgag
aaatatgatgacattccagttgaagcaacaggcaacaactgtcctccacatattgaaagt
ttcagtgatgttgagatgggagaaattattatgggaaacattgagcttactcgttatact
cgtccaactccagtgcagaagcatgctattcctattatcaaagagaaaagagacttgatg
gcttgtgctcaaacaggctctggaaaaactgcagcatttctcttgcccatcttgagtcag
atttatgctgatggtcccggagaggctctgagggccatgaaggaaaatggaagatatggg
cgtcgtaaacagtatccaatctccttggtactggcaccaacgagagaattggcagtgcag
atctatgaggaagccagaaaattctcataccggtctagagtccgtccttgcgtggtttat
ggtggtgctgaaattggtcagcagattcgagacttagaacgtggatgccacttgttagta
gccactccaggacgtctagtggacatgatggagagagggaagatcgggctagacttctgc
aaatacctggtgttagatgaagctgaccggatgttagatatggggtttgaacctcagata
cgtagaatagttgaacaagacactatgcctccaaaaggtgtccgccacactatgatgttt
agtgctacttttcctaaggaaatacagatgctggcccgtgatttcttagatgagtacata
tttctggctgtaggaagagttgggtctacttcagagaacatcacacaaaaagtggtttgg
gtggaggagatagacaaaagatcatttctgcttgacctcctaaatgcaacaggcaaggat
tccctgactctagtgtttgtggagaccaaaaagggtgcagattcgctggaggatttctta
taccatgaaggatatgcctgtaccagtatccatggagaccgttctcagagagatagggaa
gaggcccttcaccagttccgctcaggaaaaagcccaattctagtagctacagcagtagca
gcaagaggactggatatttcaaatgtgaagcatgttattaattttgacctgcctagtgat
atcgaagaatatgtgcatcgcataggccgtacagggcgtgtaggaaaccttggtcttgcc
acctcattctttaatgaaagaaatataaatattactaaggatttactggatcttcttgtt
gaagcaaaacaagaagtgccatcttggttggaaaacatggcttttgaacaccactataag
ggtagcagccgtggacgttctaagagcagtcgatttagtggagggtttggtgccagagac
tatcgacagagtagcggcgccagcagttccagcttcagcagcagccgcgcaagcagcagc
cggagtggtggaggtggccatggcagcagcagaggatttggtggaggtggctatggaggc
ttttacaacagtgatggatacggaggaaattacaactcccagggggttgactggtgggga
aactga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (11)   
   RefSeq(nuc) (3)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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