KEGG   Rattus norvegicus (rat): 500987
Entry
500987            CDS       T01003                                 

Gene name
H2afx, RGD1566119
Definition
(RefSeq) H2A histone family, member X
  KO
K11251  histone H2A
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04217  Necroptosis
rno05034  Alcoholism
rno05322  Systemic lupus erythematosus
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04217 Necroptosis
    500987 (H2afx)
 09160 Human Diseases
  09163 Immune disease
   05322 Systemic lupus erythematosus
    500987 (H2afx)
  09165 Substance dependence
   05034 Alcoholism
    500987 (H2afx)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    500987 (H2afx)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    500987 (H2afx)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histones
    500987 (H2afx)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   500987 (H2afx)
SSDB
Motif
Pfam: Histone_H2A_C Histone CBFD_NFYB_HMF
Other DBs
NCBI-GeneID: 500987
NCBI-ProteinID: NP_001102761
RGD: 1566119
Ensembl: ENSRNOG00000010386
UniProt: D3ZXP3
Position
8q22
AA seq 143 aa
MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT
AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK
TSATVGPKAPAGGKKASQASQEY
NT seq 432 nt   +upstreamnt  +downstreamnt
atgtcgggtcgcggcaagaccggcggcaaggcccgcgccaaagccaagtcgcgctcttcg
cgcgccggccttcagttcccggtaggccgcgtgcaccgactgctgcggaaaggccattac
gccgagcgcgtgggcgcaggcgcgcccgtgtacctggcggcggtgctcgagtacctcact
gccgagatcctggagctggcgggcaacgcggctcgggacaacaagaagacgcgcattatc
ccgcgccacctgcagctggctatccgcaacgacgaggagctcaacaagctgctgggcggc
gtgactatcgcgcagggcggcgtcctgcccaacatccaggccgtgctgctgcccaagaag
accagcgccaccgtggggcccaaggcgccggcgggcggcaagaaggcctcccaggcctct
caggagtactga

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