KEGG   Rattus norvegicus (rat): 79212
Entry
79212             CDS       T01003                                 
Symbol
Slc6a1
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1
  KO
K05034  solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04082  Neuroactive ligand signaling
rno04721  Synaptic vesicle cycle
rno04727  GABAergic synapse
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04082 Neuroactive ligand signaling
    79212 (Slc6a1)
 09150 Organismal Systems
  09156 Nervous system
   04727 GABAergic synapse
    79212 (Slc6a1)
   04721 Synaptic vesicle cycle
    79212 (Slc6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    79212 (Slc6a1)
Transporters [BR:rno02000]
 Solute carrier family (SLC)
  SLC6: Sodium- and chloride-dependent neurotransmitter transporter
   79212 (Slc6a1)
SSDB
Motif
Pfam: SNF
Other DBs
NCBI-GeneID: 79212
NCBI-ProteinID: NP_077347
RGD: 620533
Ensembl: ENSRNOG00000006527
UniProt: P23978 A6IBU6
Structure
Position
4:149004447..149037840
AA seq 599 aa
MATDNSKVADGQISTEVSEAPVASDKPKTLVVKVQKKAGDLPDRDTWKGRFDFLMSCVGY
AIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAP
MFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFSNYSLV
NTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVV
YFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGL
GSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASG
PGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRR
ELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRF
YDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFLFSAVQMTPLTMGSYVFPKWGQGVGWLM
ALSSMVLIPGYMAYMFLTLKGSLKQRLQVMIQPSEDIVRPENGPEQPQAGSSASKEAYI
NT seq 1800 nt   +upstreamnt  +downstreamnt
atggcgactgacaacagcaaggtggctgatgggcagatctctaccgaggtcagcgaggct
cctgtggccagtgacaagcccaaaacccttgtagtcaaggtgcagaagaaggctggagac
ctccctgaccgggacacatggaagggacgcttcgacttcctcatgtcctgtgtgggctac
gccatcggcctgggcaatgtatggaggttcccttatctctgcggaaagaacggtggtggg
gccttcctaattccatatttcctgacgctcatctttgcgggtgttcctctcttccttttg
gagtgctccctaggccagtacacctccattgggggcctgggcgtatggaagctggctccc
atgttcaagggtgtgggcctcgcggcagctgtgctgtccttctggctgaacatttattac
attgtcatcatctcctgggccatctactacctgtacaactccttcaccacgactctgccg
tggaaacagtgtgacaacccctggaacactgaccgctgcttctccaactatagcctggtc
aacaccaccaacatgaccagtgccgtggtggaattctgggagcgcaacatgcaccaaatg
acagatgggctagacaagccaggacagatccgctggccgctagccatcacactggccatt
gcctgggtgcttgtgtatttctgcatctggaagggtgttggatggactggaaaggtggtc
tacttctcagccacatacccctacatcatgctcatcatcctgttcttccgtggagtgaca
cttcctggggccaaggaggggatcctcttctacatcacgcccaacttccgaaagctgtct
gattctgaggtgtggcttgacgccgccacccagatcttcttctcctacggactgggcctg
gggtccctgattgctctgggaagctacaactctttccacaacaatgtgtacagggactcc
atcattgtttgctgcatcaactcctgcaccagcatgtttgccggcttcgtcatcttctcc
atcgtgggcttcatggctcatgtcaccaagaggtccatagccgatgtggcggcctcaggc
cctggactggcattcttggcgtaccccgaggctgtgacacagctacccatctctcccctc
tgggctatcctcttcttctccatgctgctgatgctgggcattgacagccagttctgtacc
gtggagggcttcatcactgccctggtggatgagtaccccaggcttctccgcaatcgccgt
gaactcttcattgctgccgtgtgcatcgtgtcctacctgattggcctctctaacatcacc
cagggtggcatttatgtcttcaaactgttcgattattactctgccagtggcatgagcctg
ctgttcctggttttctttgagtgtgtctccatttcctggttttatggtgtcaaccggttc
tatgacaacatccaggagatggttggctccaggccctgcatctggtggaagctgtgctgg
tcctttttcacacccatcattgtggcgggcgtgtttctcttcagtgctgtgcagatgaca
ccactcaccatgggaagctacgttttccccaagtggggccagggcgtgggctggctcatg
gctctgtcctccatggtgctcatccccgggtacatggcttacatgttcctcaccctaaag
ggctctctgaagcagcgtctccaggtcatgattcagcccagtgaagatatcgtgcgccct
gagaatggtcctgagcagccgcaggctggcagctcagccagcaaggaggcctacatctag

  All links  
Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
3D Structure (1)   
   PDB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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