KEGG T01003: 81574

Rattus norvegicus (rat): 81574

Entry

81574             CDS       T01003

Symbol

Scn1a

Name

(RefSeq) sodium channel protein type 1 subunit alpha

K04833

voltage-gated sodium channel type I alpha

Organism

rno Rattus norvegicus (rat)

Pathway

rno04728

Dopaminergic synapse

Brite

KEGG Orthology (KO) [BR:rno00001]
09150 Organismal Systems
  09156 Nervous system
   04728 Dopaminergic synapse
    81574 (Scn1a)
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:rno04040]
    81574 (Scn1a)
Ion channels [BR:rno04040]
Voltage-gated cation channels
  Sodium channel, voltage-gated (Nav)
   81574 (Scn1a)

SSDB

Motif

Pfam:

Ion_trans Na_trans_cytopl Na_trans_assoc IQ_SCN5A_C PKD_channel GPHH PFF1_TM ATP-synt_B IQ Neur_chan_memb Zip FUT8_N_cat Pns11_12

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

RGD:

Ensembl:

UniProt:

Position

3:complement(71360840..71479870)

AA seq 2009 aa
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNVTTDY
NGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAATASEHSREPSAAGRLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAGLPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGVAYVKRKIYEFIQQSFVRKQKILDEIKPLDDLNNRKDNCTSNHTTEIGKDLDCLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVMEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDTFEITEVNNHSDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDMIIDRINENSITEKTDLTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK

NT seq 6030 nt +upstreamnt +downstreamnt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcagctattgaaaggcgcattgcagaagaaaaagctaagaatcccaagccagac
aaaaaagatgatgatgaaaatggcccaaagccgaacagtgacttggaagctgggaagaac
cttccatttatctatggagacattcctccagagatggtgtcggagcctctggaggacctg
gacccctactatatcaataagaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacttctgccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacactcattattcagcatgttaattatgtgcactattttgacg
aactgtgtatttatgacaatgagtaaccctcctgactggacaaagaatgtagagtacacc
ttcacaggaatatatacctttgaatcactaataaaaattattgcaaggggcttctgttta
gaagattttactttccttcgtgacccatggaactggctggacttcactgtcattacattc
gcatatgtgacggagtttgtggacctgggcaatgtctcagcgttgagaacattcagagtt
cttcgagcattgaaaacaatatcagtcattccaggcctgaagaccatcgtgggggccctg
atccagtctgtgaagaagctctctgacgtcatgatcctcaccgtgttctgtctcagtgtg
tttgctctaatcgggttgcagcttttcatgggcaacctgaggaataagtgtgtacagtgg
ccccccaccaacgcttcccttgaggaacatagcatagagaagaatgtaactacggattac
aacggcacacttgtaaatgaaaccgtgtttgaatttgactggaaatcatacattcaagac
tcaagatatcattatttcctggagggtgttttagatgcactactgtgtggaaatagctct
gatgcaggccaatgtccagaaggttacatgtgtgtaaaagctggcagaaaccctaactat
ggttacacaagctttgacaccttcagctgggcatttctgtccctgtttcgactgatgact
caggacttctgggaaaatctttaccaactgacattgcgtgctgccgggaaaacatacatg
atattttttgtgctggtcattttcttgggctcattctacctgataaacttgatcctggct
gtggtggccatggcctatgaggaacagaaccaggccacattggaggaggctgaacagaag
gaggcagagtttcagcagatgctggagcaactgaagaagcagcaggaagccgcacagcag
gcggcggcagcaacagcatcagaacattccagggagcccagtgcagcgggcaggctctca
gatagctcttcagaagcctccaagttgagttcaaagagcgctaaagaaaggcggaatcgg
aggaaaaaaagaaaacagaaagagcagtctggaggggaagagaaagatgatgatgaattc
cacaaatccgagtccgaagatagcatcaggaggaagggcttccgcttctccatagaaggg
aacagactgacctatgaaaagaggtactcttccccacatcagtctctgttgagcattcgc
ggctcactgttttccccgagacgcaatagcagaacaagtcttttcagcttcagagggcga
gcgaaggacgtggggtctgagaatgattttgcggacgatgagcacagcaccttcgaggac
aatgagagcaggagagactctctgtttgttccccgaagacatggagagcgacgcaacagt
aacctcagccaaaccagcagatcctcccgaatgctggcggggcttccagcaaacgggaag
atgcacagcacagtggattgcaatggtgtggtttccttggtgggcggaccctcggttccg
acatcgccagttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaactactgaaactgagatgagaaagaggaggtcaagttctttccatgtttcc
atggactttcttgaggatccttcccagaggcaaagggcaatgagcattgccagcatctta
acaaatacagtagaagaactagaagaatccagacagaaatgtccaccctgttggtataaa
ttttccaacatatttttaatttgggactgttctccatattggctaaaagttaaacatatt
gtcaacctggttgtgatggacccatttgttgacctggcaattactatctgtattgtgtta
aatacccttttcatggccatggagcactaccccatgactgaacatttcaatcatgtactt
acagtaggaaacttggttttcactgggatcttcacagcagaaatgttcctgaaaatcatt
gccatggacccttactattatttccaagagggctggaatatctttgatggtttcattgtg
acactcagcctggtagaacttggccttgccaatgtggaagggttatcagttctccgttca
ttccgactgctccgagtcttcaagttggcaaagtcctggcccacactgaacatgctcatt
aagatcatcggcaactcggtgggcgcactgggcaacctgaccctggtgctggccatcatc
gtcttcatttttgccgtggtcggcatgcagctgttcggcaaaagttacaaagattgtgtc
tgcaaaattgccactgactgcaaactcccgcgctggcacatgaacgacttcttccactcc
ttcctgatcgtgttccgagtgctgtgtggggagtggatagagaccatgtgggactgcatg
gaggtcgcgggtcaagccatgtgccttactgtcttcatgatggtcatggtgattgggaac
cttgtggtcctgaacctctttctggccttgcttctgagctcatttagtgcagacaacctt
gcagccactgacgatgacaacgaaatgaacaaccttcaaattgctgtggacaggatgcac
aaaggagtagcttatgtaaaaagaaaaatatatgagtttattcaacagtcctttgttagg
aaacagaagatcctagatgaaattaagccacttgatgatctaaacaacagaaaagacaat
tgtacatctaaccacacgacagagattgggaaagatctggactgtctgaaagatgtgaat
ggaaccacgagtggcatagggaccggcagcagtgtggaaaagtacatcattgatgagagt
gactacatgtcattcataaacaaccccagcctcaccgtgactgtgcccattgctgtggga
gagtctgactttgaaaacttaaacacagaggactttagcagtgaatcagatctagaagaa
agcaaagagaaactcaacgaaagcagtagttcctcagaaggaagcacagtagacatcggg
gcacctgcggaggaacagcctgtcatggaaccagaagaaacccttgagcccgaagcttgc
ttcactgaaggctgtgtgcagagattcaagtgctgtcaaatcagtgtggaagaaggaaga
ggaaaacagtggtggaaccttcggagaacgtgcttccgaatagttgagcacaactggttt
gagaccttcattgtgttcatgattctcctcagtagtggtgccctggcctttgaggatata
tacattgatcagcgaaagacgatcaagaccatgctggagtatgcagacaaggttttcact
tacatttttatcctggagatgctcctcaaatgggtagcctacggctatcaaacgtatttc
accaatgcctggtgttggctggacttcttaattgttgatgtttcattggtcagtttaaca
gcaaatgccttgggttactctgaacttggggccatcaagtccctaaggacactaagagct
ctgagacccctaagagccttatcacgatttgaagggatgagggtggttgtgaatgccctg
ttaggagcaattccatccatcatgaatgtgcttctggtttgccttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtgttaacaccaca
actggtgacacatttgagatcaccgaagtcaataatcattctgattgcctaaaactaata
gaaagaaatgagactgcccggtggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctttctttgcttcaagttgcgacgtttaagggttggatggatatcatgtatgca
gcagttgattccagaaatgtggaactgcagcctaagtatgaggaaagcctgtacatgtac
ctgtacttcgtcatcttcatcatcttcggctcgttcttcactctaaatctattcatcggt
gtcatcatagacaacttcaaccagcagaagaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgcaatgaagaaattaggatcaaaaaagccacaa
aagcctatccctcgacctggaaacaaatttcaaggaatggtctttgactttgtaaccaga
caagtgtttgacatcagcatcatgatcctcatctgtctgaacatggtgaccatgatggtg
gaaacggatgaccagagcgattatgtgacaagcattttgtcacgtatcaacctggtgttc
attgtgctgttcaccggcgagtgcgtgctgaagctcatctccctccgccattattatttc
accattggctggaatattttcgattttgtggtggtcatcctctccattgtaggaatgttt
cttgcggagctgatagagaagtatttcgtgtcccctaccctgttccgagtcatccgcctg
gccaggattggacgaatcctacgcctgatcaaaggcgccaaggggatccgcactctgctc
tttgctctgatgatgtcccttcctgcgctgttcaacatcggcctcctgcttttcctggtc
atgttcatctacgccatctttgggatgtccaactttgcctatgttaagagggaagttgga
attgatgacatgttcaactttgagacttttggcaacagcatgatctgcctgttccaaatc
accacctctgcgggctgggacggactgctggcccccatcctcaacagcaaaccccctgac
tgtgaccctaataaagttaaccccggaagctcggtgaagggggactgtgggaacccatcc
gtggggattttcttttttgtcagctacatcatcatatccttcctggtggtggtgaacatg
tacatcgctgtcatcctggagaacttcagcgtcgccaccgaagaaagtgcagagcccctg
agtgaggacgactttgagatgttctacgaggtctgggagaagttcgaccctgacgccact
cagttcatggaatttgaaaaattatctcagtttgcagctgctctcgaaccccctctcaac
ttaccacaaccgaacaaacttcagctcattgccatggacctgcccatggtgagtggagac
cgcatccactgcctggacatcttatttgcttttacaaagcgggtcctgggcgagagtgga
gagatggacgctcttcgaatccagatggaagagcgcttcatggcttccaacccctccaag
gtctcctatcagccaatcactacaacgttaaaacgaaagcaagaggaggtgtcagccgtt
atcattcagcgcgcttacaggcgccaccttttgaagcgaacagtaaaacaagcttcattc
acatacaataagaacaaactcaagggcggggctaatcttcttgtaaaagaagacatgatc
attgacaggataaatgaaaactctattacagagaaaactgacctgacgatgtccactgca
gcttgtccgccctcctacgaccgggtgacaaagccaatcgtggagaaacacgagcaggaa
ggaaaagatgagaaagccaaagggaaatga

All links

Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (14)   
   RefSeq(nuc) (8)   
   GenBank (3)   
   EMBL (3)   
Protein domain (13)   
   Pfam (13)   
All databases (42)   

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