KEGG T01003: 85490

Rattus norvegicus (rat): 85490

Entry

85490             CDS       T01003

Symbol

Col5a1

Name

(RefSeq) collagen alpha-1(V) chain precursor

K19721

collagen type V/XI/XXIV/XXVII, alpha

Organism

rno Rattus norvegicus (rat)

Pathway

rno04820

Cytoskeleton in muscle cells

rno04974

Protein digestion and absorption

Brite

KEGG Orthology (KO) [BR:rno00001]
09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    85490 (Col5a1)
09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    85490 (Col5a1)
09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    85490 (Col5a1)
Glycosaminoglycan binding proteins [BR:rno00536]
Heparan sulfate / Heparin
  Extracellular matrix molecules
   85490 (Col5a1)

SSDB

Motif

Pfam:

Collagen COLFI Laminin_G_2 Laminin_G_1

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

RGD:

Ensembl:

UniProt:

Position

3:31606475..31755097

AA seq 1840 aa
MDVHTRWKAPRPGAPLLSSPLLLLLLLLWAPPPSRAAQPTDLLEMLDFHNLPSGVTKTTG
FCATRRSSKEPDVAYRVSKDAQLSMPTKQLYPESDFPEDFSILTTVKAKKGSQAFLVSVY
NEQGIQQLGLELGRSPVFLYEDHTGKPGPEEYPLFPGINLSDGKWHRIAISVYKKNVTLI
LDCKKKITKFLNRGDHPIIDVNGIIMFGSRILDDEIFEGDIQQLLFVSDHRAAYDYCEHY
SPDCDTAVPDTPQSQDPNPDEYYPEGEGETYYYEYPYYEDPEDPGKEPAPSQKPVEAARE
TTEVPEEQTQPPSEAPTVPETSDTAGKEDNPGIGDYDYVPTDDYYTTSPYEDFGYGEGVE
NPDQPTNPDSGAEIPTSTSVTSNSSNPAPSPEEGKDDLGGEFTEETIKNLDENYYDPYFD
PDSDSNVSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAG
LPGPPGTTGPTGQMGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPM
VSAQESQAQAILQQARLALRGPAGPMGLTGRPGPMGPPGSGGLKGEPGDMGPQGPRGVQG
PPGPTGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGLPG
DDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPG
PPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQG
PPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRG
EDGPEGPKGRGGPNGDPGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKG
GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG
FPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPG
PPGPPGEQGLPGAAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGSEG
PPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGVPGEKGPQGPAGRDGLQG
PVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADG
EPGPRGQQGLFGQKGDEGSRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRG
PSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPLGPKGERGEKGEAGPSG
AAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPG
PTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDG
LRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQG
EKGDRGLPGPQGSSGPKGEQGITGPSGPLGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAG
HPGLPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGAGESYVDYADGMEEIFGSLNSL
KLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGS
TCVFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASA
QQNITYNCYQSVAWQDAATGSYDKAIRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKT
VLEIDTPKVEQVPIVDIMFTDFGEASQKFGFEVGPACFLG

NT seq 5523 nt +upstreamnt +downstreamnt
atggacgtacacacccgctggaaagctccgcgcccgggcgccccgctgctgtcctcgccg
ctgctcctgctcctgctgctgctgtgggcgccgcctccgagccgcgcagctcagccaaca
gatcttctggagatgctagattttcacaatttgccctcaggcgtaacgaaaaccacaggt
ttctgtgccactcgacgatcttccaaagagccggatgttgcctaccgagtctctaaagat
gcacagctcagcatgcccaccaagcagctgtaccctgagtctgactttcctgaggacttc
tccatcctgacaaccgtgaaagccaagaaaggcagtcaggccttcctggtctccgtttac
aatgagcagggcatccagcagttgggactggagctgggccgctcccctgtcttcctctat
gaggaccacacagggaagcccgggcctgaagagtatccactcttccctggcatcaacctg
tccgatggcaagtggcaccgaatcgctatcagtgtatacaagaaaaatgtcaccttgatc
ctcgactgtaaaaagaagatcacgaagttcctcaaccgcggcgaccaccccataatagat
gtcaacggtatcatcatgtttggctcccggattctggatgatgaaatatttgagggtgac
atccaacagttgctcttcgtctccgaccaccgagctgcctatgattactgtgagcactac
agccccgactgtgacacagcggtccctgacacacctcagtcacaggaccctaacccagat
gaatattacccagaaggagagggtgagacctattactatgagtacccatattatgaagac
cctgaagacccgggaaaggagcccgccccctctcagaagccagtggaagccgccagagaa
accacggaggttcctgaggagcagacccagcccccatccgaagcccctacagtgcctgag
accagtgacacggctggcaaggaggacaatccagggatcggggactacgactatgtgccc
actgacgactactacactacatccccgtatgaagacttcggctatggcgagggcgtggag
aaccccgaccagcccaccaaccctgactcaggggccgagatccccaccagcaccagtgtt
acctccaattcctccaatccggctccatctccagaggaagggaaggatgacctgggaggt
gagttcaccgaggagaccatcaagaatctagatgaaaactactatgacccgtactttgac
ccggactccgactccaatgtctctccatcggagatagggccaggcatgcctgctaaccag
gacaccatctatgaagggattggaggaccccgaggtgagaaagggcaaaagggagaacca
gccatcattgagccgggaatgctgatagaggggccccctggccctgaaggccctgctggt
cttccaggacctccaggaactacgggtcctactggccaaatgggtgaccctggagaaagg
ggtccccctgggcgcccaggtcttcctggggctgatggcttgcctggtccccccgggacc
atgctcatgctgccgttccgttttggaggtggtggcgacgccggttctaagggccccatg
gtctctgcccaggaatcccaggcacaggctatcctccagcaagccaggttggcactaagg
ggaccagctggtccaatgggtctcaccgggagacctggccccatgggtcctcctgggagt
ggaggtttgaagggtgagccaggagacatgggacctcagggtcctcgaggtgtgcaaggt
ccacccggcccaacagggaagcctggaagacggggccgtgctgggagtgatggtgccaga
ggcatgcctggacaaacaggccccaagggtgaccgtggctttgatggtctggctgggttg
ccgggagagaaaggccatagaggtgaccctggtccttctggcccgccgggactcccagga
gatgatggagaaaggggtgacgatggagaagttgggcccagggggctgcctggggagcct
ggaccacgtggtctgcttgggccaaaaggcccccctggcccacctggacctcctggtgtg
acgggtatggatggccagcctggccccaaaggaaatgtgggtccccagggagagcctggg
cccccaggacagcagggtaatcctggtgcccagggtcttcccggtccccagggtgccatt
ggtcctccaggagaaaagggtcctttggggaaaccaggtctcccaggaatgcccggagct
gatggacccccggggcaccctggcaaagaaggtcctccaggagagaaaggaggccagggt
cctcccggcccccagggtcccattggctacccaggtccacgaggagtcaagggggcagat
ggcatccgagggctgaagggcaccaagggagagaagggtgaagacggcttccctgggttt
aaaggcgacatgggaataaagggtgaccggggggagatcggcccacccggcccccgagga
gaagatggtcctgaaggcccaaaaggtcgaggtggtcccaatggtgatcctggtcccctg
gggcccaccggggagaagggaaagctcggagtgcctggattaccagggtacccaggaaga
caagggccaaagggttctattggattccctggcttcccgggcgccaacggagagaaaggt
ggcagggggacacctggaaagccaggaccacggggacagcgaggcccaacgggcccgagg
ggtgaacgaggcccacggggcatcactgggaagcctggccctaagggcaactcaggaggt
gatggcccagccggccctcctggtgagcggggacccaatggaccccaaggccccaccggc
ttccctggacctaagggtcccccgggtccaccaggcaaggacgggctccccggacatcct
gggcagagaggggagactggtttccaaggcaagactggccctccaggccctccaggagtg
gttggccctcagggtcccacaggcgagacgggtcccatgggagagcgtggccaccctggt
cctccaggcccccctggtgaacagggcctcccaggtgctgctgggaaagaagggacgaag
ggtgacccaggtcctgctggcctccctgggaaggatggacctccaggattgcgtggattc
cctggggaccgagggctccccggccccgtgggagcactcggactgaaaggcagcgaaggc
ccccctggccccccaggtcctgcgggttctccaggggagagaggaccagctggtgctgct
ggacccattggaattccagggagacctgggcctcagggacctccggggcctgctggagag
aaaggggttcctggagagaaaggtccgcaaggcccggctggccgagatggcctgcaaggt
cccgtggggctccctggaccagccggccccgtgggtcctcctggagaagatggagataag
ggagagatcggagagcccgggcagaaagggagcaagggcgacaaaggcgagcagggtcct
cctgggcctaccggtcctcaaggccccattgggcagccaggcccttcgggagcagatggt
gaacctggccctcgtggacagcagggcctgtttgggcagaaaggagatgaaggttcaaga
ggtttcccaggaccgccagggccagtgggcttgcagggtttaccaggacctccaggagaa
aagggtgagacaggagacgtgggccagatgggccctcctggtccaccaggcccccgagga
ccctctggagctccaggagctgatgggccacagggtcctccaggagggattggcaaccct
ggtgcagtcggagaaaagggagagcctggcgaagctggagagcctggccttccaggagaa
ggaggtcccctgggacctaaaggagaaagaggggagaagggagaggctggcccctctggt
gctgctggaccccctggacccaaaggcccacctggagatgatggccccaaaggcagcccc
ggccccgtgggctttcctggagaccctgggccccctggagagccaggcccagcaggtcaa
gatggcccacctggtgacaaaggggatgatggagaacctgggcagacgggatccccaggc
cctactggtgaacctggtccatctgggcctccaggaaagaggggtccaccgggccctgca
ggccctgaaggcaggcagggggagaaaggagccaagggagaagctggcttagaaggccct
cctgggaagactggccccattggtccccaaggggcccctgggaagcctggccctgatggt
cttcgtgggatccctggtcctgtgggtgagcaaggcctcccaggatccccaggccctgat
ggtccacccggccccatgggtcctccaggactccctggcctcaaaggagactccggtccc
aaaggtgaaaagggccatccgggcctgattggactcatcggacctccgggcgaacaaggt
gaaaaaggtgaccgaggactcccaggcccccagggctcatctggtcctaaaggagaacag
ggcattacaggtccttctggcccgcttgggcctcctggtcccccaggcttgccgggccct
ccaggtcccaaaggtgctaaaggttcatcgggtcccactggcccgaagggcgaggcaggc
catccaggactccctggtccacccgggcctccaggcgaggtcatccagcccctgccaatc
caggcgtccaggactcggcggaacattgatgccagtcagctcctggatgatggggctggg
gagagctacgtggattatgcagatggcatggaagagatctttggttccctcaactccctg
aagctggagattgagcagatgaagcggccactgggcacacagcagaacccagcccgtacc
tgcaaggaccttcaactctgccatcctgatttcccagacggcgaatactgggtcgatccc
aaccaagggtgctccagggactccttcaaagtctactgcaatttcacagctggagggtcc
acgtgcgtcttccctgacaagaagtctgagggagccagaatcacttcttggcccaaagaa
aacccaggttcctggttcagtgaattcaagcgtgggaaactgctctcctatgtggatgct
gaaggcaaccctgtgggcgtggtacaaatgaccttcctgcggctgctgagtgcctctgcc
cagcagaacatcacctacaactgctaccagtccgtggcctggcaggatgccgccacaggc
agctacgataaggctatccgcttcttgggctccaacgatgaggaaatgtcttatgataac
aacccctacatccgtgccctggtggatggctgtgctaccaagaaaggctaccagaagacg
gtgctggagattgacacgcccaaagttgagcaagtccccattgtggacatcatgttcacc
gactttggtgaagcctcacagaaatttggatttgaagtagggccagcttgcttcctaggc
tag

All links

Gene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (14)   
   RefSeq(nuc) (4)   
   GenBank (5)   
   EMBL (5)   
Protein domain (4)   
   Pfam (4)   
All databases (30)   

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