KEGG   Rhodopseudomonas palustris BisB5: RPD_0202
Entry
RPD_0202          CDS       T00345                                 
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, subunit A
  KO
K16898  ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
Organism
rpd  Rhodopseudomonas palustris BisB5
Brite
KEGG Orthology (KO) [BR:rpd00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpd03400]
    RPD_0202
Enzymes [BR:rpd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RPD_0202
DNA repair and recombination proteins [BR:rpd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    AddAB pathway proteins
     RPD_0202
SSDB
Motif
Pfam: UvrD-helicase UvrD_C UvrD_C_2 PDDEXK_1 AAA_19 AAA_30 DEAD AAA_16
Other DBs
NCBI-ProteinID: ABE37442
UniProt: Q13EP7
Position
complement(225807..229286)
AA seq 1159 aa
MSAPRSIPDQARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCIT
FTKAAAANMAERVFTTLGRWVTLDDEALTAAIKATGIKSVGPSLLAQARKLFACALETPG
GLKVQTIHALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLAVLLQAAAAPDSAAG
RALTLAMTSAADVTFREVVQEACTRRDRFLAWITQAGGVDGAMAQLSATLGVAPQDRCED
VERDILDGPNLPRAQWSTAAAMFESGSANDQAQAKRLRAALALSDVAQLDKYCEVFFTKD
GPRKSLATKKIADAAPGFVEDLKREGARLEDLLERRRALLMRERTRALLVIAADVAERIR
REKQERGLLDYDDLIDKTLAMLDSGASSWVHFKLDRGVDHVLIDEAQDTSPKQWDIVAHL
IAEFTAGEGARDGVRRTVFAVGDEKQSIFSFQGAVPKEFAERRDLLQRRFHGAGLNFEKV
SFNYSFRSGATILQSVDHVFRDPDIYRSIHADAAYPLHQSLADAGPSVIDLWPLELPDDK
QNIEGWRAPFDAVSETSPEVRLAQKVQAEIASLIAGGTMTGSLGDRRRLRFGDVLVLVRR
RGSAFDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPL
FGLDDDDLFRLAWRRKGSLRHALREKAAGDAKLATALQRLDACAERSQTDTPFGFYAWLL
GGVGGRARILRRLGPEANDALDEFLELALSYEQKAAPSLQGFMAWLRAADTEIKRDMEIS
RDEVRVMTVHGAKGLEAPVVFLVDTTSSPSDTQRLNLIRLPGGNAQPGSVGAMVWAGRKS
NDPRVVEQARAEMVSETEDEYRRLLYVAMTRAADRLIVGGCMPGNRNEVRALSWYDLISK
GLENSGLTMRTAPPDGAVKRYCRPEDEVTEIAPSEQAPAAPPLVMPDWLHKAAPALRRPD
NLLRPSDPDDADHRRIRRGETEAQRQRALQRGTLVHRLLQSLPDLPADIRANAADRFLLR
NADDWSPQERDALAARVLEVISDDRFAAVFAPGSRAEVPIVGRLQRHGEPVLISGQIDRL
VVTDAEVLIVDYKTNHAPPRSLAETPPAYVRQLALYRAVLSLLYPQRIVRAALLWTEAPE
IMEISAPALDAEQAALTVA
NT seq 3480 nt   +upstreamnt  +downstreamnt
gtgagcgcgccgcgcagcattcccgatcaggcgcgcgagcgtcagatcctcgcctccgat
ccctcggcctcggtgttcgtctcggccaatgccggctccggcaagacgcatgtgctggtt
cagcgggtcattcgcctgctgctcgatggcgtgccgccggaacgcatcctgtgtatcacc
ttcaccaaagccgccgccgccaacatggccgagcgcgtcttcacgacactcggtcgctgg
gtgacgctcgacgacgaggcgctgacggctgcgatcaaggcgactggtatcaagtcggtt
gggccttctcttctggcgcaagcgcgaaaactgtttgcctgcgcgctggagacgccgggc
gggctgaaggtgcagaccatccacgcgctctgcacccggttgctgcagcagtttccgttc
gaggccaatgtgccggcgcggttcagcgtgctcgacgatcgcgatcaggccgagctgatg
cagcgcgccagcctcgcggtgttgctgcaggcggcggccgcgccggacagcgcggcgggg
cgggctctgacgttggcgatgaccagcgccgccgacgtcaccttccgcgaggtggtgcag
gaagcctgcaccaggcgcgatcgcttcctcgcctggatcacgcaggccggcggcgtcgac
ggcgccatggcgcagctctcggcgacgctcggcgtcgcgccgcaggatcgctgcgaagac
gtcgagcgcgacatcctcgacggcccgaatctgccgcgcgcgcaatggtctacggcagca
gcgatgttcgagtcggggagcgccaacgaccaggcgcaggcgaagcgtctgcgcgcggcg
ctcgcgctgtcggacgtggcgcagctcgacaagtattgcgaggtgttcttcaccaaggac
ggcccgcgcaaaagtctggccaccaagaagatcgccgacgccgcgcccgggttcgtcgag
gatctgaagcgcgaaggcgcgcggctcgaagatctgctcgagcgtcgccgcgcgctcctg
atgcgcgagcggacgcgggcgctgctggtgatcgcggccgacgtcgccgagcggatccgg
cgcgagaagcaggagcgtgggcttctcgattatgacgatctgatcgacaagacgctcgcg
atgctcgatagcggcgcgtcgagctgggtgcatttcaagctcgatcgtggcgtcgaccac
gtgctgatcgacgaggcgcaggacaccagcccgaagcaatgggacatcgtcgcgcatctg
atcgcggaattcaccgccggcgagggcgcgcgcgatggcgtgcggcgcacggtgttcgcg
gtcggcgacgagaagcagtcgatcttctcgttccagggcgcggttccgaaggaattcgcc
gagcggcgcgatctgttgcagcggcgcttccacggcgccggactgaacttcgagaaggtg
agtttcaactactcgttccgctccggcgcgacgatccttcagtccgtggaccacgtgttc
cgcgatcccgacatctatcgcagtatccacgccgacgccgcctacccgctgcatcaatcg
ctggccgatgccggcccgagcgtgatcgatctgtggccgctcgaactgcccgacgacaag
cagaacatcgagggctggcgtgcgccgttcgatgcggtgtcggaaaccagtccggaggtg
cggctggcgcagaaggtgcaagccgagatcgcgtcgctgattgcgggcggcacgatgacg
ggctcgctcggcgaccggcggcggctgcgttttggcgatgtgctcgtgctggtgcgccgt
cgcggctcggcgttcgacgcggtgatccaggccctgaagcgcggcggcattccggtggcc
ggcgccgaccggctgaagctcaccgagcatatcgcgatcatcgatctgatgaatctcgcc
gacgcgttgctgctgccgcaggacgatcttgcgctcgcggtggcgctgaagagcccgctg
ttcggcctcgacgacgacgatctgttcaggctggcgtggcgacgcaaaggctcgctgcgc
catgcgctgcgcgagaaggcggccggggacgcaaagttggcaaccgcgttgcagcggctc
gatgcctgcgcggagcggtcgcagaccgacacgccattcgggttctacgcctggctgctc
ggcggcgtcggcggccgcgcaaggattttgcgcaggctggggccggaagccaacgacgcg
ctcgacgagtttctcgaattggcgctgagctacgagcagaaggctgcgccgtcgctgcag
ggcttcatggcgtggctgcgcgccgccgataccgagatcaagcgcgacatggaaatctcg
cgcgacgaagtccgggtgatgaccgtgcatggcgccaagggtctcgaggcgccggtggtg
ttcctggtcgatacgacgtcgtcgccgtccgacacccagcggctcaatctgatccggctg
cccggcggcaatgcgcagccgggctccgtcggcgcgatggtgtgggcgggccgcaagtcg
aacgatccgcgcgtcgtcgagcaggcccgcgcggagatggtcagcgagaccgaggacgaa
tatcgccggctgctctatgtggcgatgacccgcgccgccgatcggctgatcgtcggcggc
tgtatgcccggcaatcgcaacgaggtgcgcgcgctgtcctggtacgatctgatcagcaag
ggcttggagaactccggcctgacgatgcgcacggcgccgccggatggcgcggtgaagcgc
tattgccgtcccgaggacgaggtcacagagatcgcaccgtccgaacaagcgcctgccgcg
ccgcccctcgtcatgccggactggctgcacaaggccgcgccggcgctgcgccggccggac
aatctgttgcggccatccgacccggacgatgccgatcatcgccgcatccgccgcggcgaa
acggaggcgcaacgccagcgcgccttgcagcgcggcacgctggtgcaccggctgctgcag
tcgctgcccgatctgccggccgacattcgcgccaatgccgccgaccgcttcctcctccgc
aacgccgatgattggagcccgcaggagcgcgacgcgctcgccgcgcgggtgctggaggtg
atcagcgacgaccgcttcgccgccgtcttcgctcctggcagccgcgccgaagtgccgatc
gtcggtcgcttgcagcggcatggcgagccggtgctgatctccggccagatcgaccggctg
gtggtgaccgacgccgaggtcctgatcgtcgactacaagaccaatcacgccccgccgcgc
agtctggcggagaccccgccggcttacgtccgccagctcgcactgtatcgggcggtgcta
tcgctgctgtatccacagcggatcgtccgcgccgccctgctatggaccgaagcgcctgaa
atcatggagatttcagcccctgcgctggacgcggagcaggccgccttgacggtggcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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