KEGG T00722: Rpal

Rhodopseudomonas palustris TIE-1: Rpal_4978

Entry

Rpal_4978         CDS       T00722

Name

(GenBank) A/G-specific adenine glycosylase

K03575

A/G-specific adenine glycosylase [EC:3.2.2.31]

Organism

rpt Rhodopseudomonas palustris TIE-1

Pathway

rpt03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:rpt00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Rpal_4978
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpt03400]
    Rpal_4978
Enzymes [BR:rpt01000]
3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.31  adenine glycosylase
     Rpal_4978
DNA repair and recombination proteins [BR:rpt03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Rpal_4978
Prokaryotic type
     Rpal_4978

SSDB

Motif

Pfam:

NUDIX_4 HhH-GPD HHH EndIII_4Fe-2S RecR_HhH HHH_8

Other DBs

NCBI-ProteinID:

ACF03467

UniProt:

B3Q946

Position

complement(5357814..5358863)

AA seq 349 aa
MRARPAALLAWYDRHRRTLPWRAPPGATADPYAVWLSEIMLQQTTVRAVGPYFDKFMARW
PTVTALGEASLDDVLKMWAGLGYYSRARNLHACAVAVTRQHGGRFPDTEEGLRALPGVGP
YTAAAIAAIAFSRRTMPVDGNIERVVSRLYAVEDELPKAKPRIKALAETLLGPSRAGDSA
QALMDLGATICTPKKPACALCPLMQGCTARLRGDAESFPRKAPKKTGALRRGAAFVVIRG
DQVLVRSRPAKGLLGGMTEVPNSDWLPDQDEAAAKAQAPALKGVGRWHRKAGVVSHVFTH
FPLELAVYVAHASAGTRAPTGMRWTQISTLSDEALPNLMRKVIAHGLGD

NT seq 1050 nt +upstreamnt +downstreamnt
ttgcgcgcgcggcccgccgcattgctggcctggtacgaccggcatcgccgcaccctgccg
tggcgggcgccgcccggcgcgaccgccgatccctatgcggtgtggctgtcggagatcatg
ctgcagcagaccaccgttcgtgcggtcgggccgtatttcgacaagttcatggcgcggtgg
ccgacggtgacggcgctgggcgaggcctcgctcgacgacgtgctgaagatgtgggccggg
ctcggctactattcacgcgcccgcaacctgcacgcctgcgcggtggcggtgacgcgccag
cacggcggccgctttcccgacaccgaggaggggctgcgggcgctgcccggcgtcgggccc
tacacagcagccgccatcgccgcgatcgcgttcagccgccggaccatgccggtcgacggc
aatatcgagcgggtggtgtcgcggctgtacgcggtcgaggacgaactgccgaaggccaag
ccgcgcatcaaggcgctggccgagacgctgctcggcccgtcccgcgccggtgacagcgcc
caggcgctgatggatctcggcgccaccatctgcacgccgaagaagccggcctgcgcgctg
tgcccgctgatgcagggctgcaccgcacggctgcgcggtgatgccgagagctttccgcgc
aaggcgccgaagaagaccggggcgctgcgccgcggtgccgccttcgtggtgatccgcggc
gatcaggtgctggtccgcagccgccccgccaagggcctgctcggcggcatgaccgaggtg
ccgaactccgactggttgcccgatcaggacgaagccgccgccaaggcgcaggccccggcg
ctgaaaggcgtcggtcgctggcatcgcaaagccggcgtcgtcagccatgtgttcacgcac
ttcccgctggagctggccgtgtatgtggcgcatgcctcggccggcacccgagcccccacc
ggcatgcgctggacgcagatctcgacgctgtcggacgaagctttgcccaatctgatgcgc
aaggtgatcgcccacggcctcggtgattga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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