KEGG   Rhodococcus pyridinivorans SB3094: Y013_20435
Entry
Y013_20435        CDS       T02974                                 
Name
(GenBank) helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
rpy  Rhodococcus pyridinivorans SB3094
Pathway
rpy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rpy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Y013_20435
  09124 Replication and repair
   03420 Nucleotide excision repair
    Y013_20435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rpy03021]
    Y013_20435
   03400 DNA repair and recombination proteins [BR:rpy03400]
    Y013_20435
Enzymes [BR:rpy01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Y013_20435
Transcription machinery [BR:rpy03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     Y013_20435
DNA repair and recombination proteins [BR:rpy03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     Y013_20435
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: AHD22830
UniProt: V9XLI0
Position
complement(4356174..4357832)
AA seq 552 aa
MADGPLIVQSDKTVLLEVDHDRANEARQAIAPFAELERAPEHIHTYRVTPLALWNARAAG
HDAEQVVDALVSHSRFAVPQALLVDIVDTMSRYGRLQLVKNPAHGLTLVSLDRAVLAEVL
RNKKIAPMLGARIDDDTVIVHPSERGRVKQMLLKIGWPAEDLAGYVDGEAHSISLDFETN
PWHLRDYQELAADSFWSGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWK
RELIARTSLTEDEIGEYSGEKKEIRPVTIATYQVITRKSKGEYRNLELFDSRDWGLMIYD
EVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKDIEAQGWI
APADCVEVRVTLTDAERMAYAVAEPEERYKLCSTARTKIPVVKSILEQHQDAPTLIIGAY
IDQLDELGEALDAPVIKGSTKTKEREALFDRFRSGELKVLVVSKVANFSIDLPEASVAIQ
VSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI
TDADDLLGPQIG
NT seq 1659 nt   +upstreamnt  +downstreamnt
gtggccgacggaccgctcatcgtccagtccgacaagaccgtgctcctcgaggtcgatcac
gaccgggcgaacgaggcgcggcaggcgatcgcaccgttcgccgagctcgaacgcgccccc
gagcacatccacacctaccgggtgacgccgctggcattgtggaacgcccgtgccgccggt
cacgacgccgagcaggtcgtcgacgcgctggtctcgcattcccggttcgccgtcccgcag
gcgctgctcgtcgacatcgtcgacaccatgagccgttacgggcgcctccagctggtcaag
aaccccgcccacggcctgaccctggtcagcctcgaccgggcggtgctcgccgaggtcctg
agaaacaagaagatcgccccgatgctcggtgcgcgcatcgacgacgacaccgtgatcgtg
catccgagcgagcgcggacgcgtcaagcagatgctgctgaagatcggctggccggccgag
gacctcgcggggtacgtcgacggcgaggcccattcgatctcgctggacttcgagacgaac
ccctggcacctgcgcgactaccaggaactggccgccgactcgttctggtcgggcggctcg
ggtgtcgtggtgctgccgtgcggcgccggtaagacgatggtcggcgcggccgcgatggcg
aaggccggcgcgacgacgctcatcctcgtgacgaacacggtcgccgggcgccagtggaag
cgcgagctgatcgcccgtacctccctcaccgaggacgagatcggcgagtactcgggcgag
aagaaggagatccgcccggtcaccatcgccacctaccaggtgatcacccgcaagtcgaag
ggtgaataccgcaatctcgagttgttcgactcccgcgactgggggctgatgatctacgac
gaggtgcacctgctgccggcgccggtcttccgtatgaccgcagacctgcagtcccgccgc
cgcctcggtctcaccgcgaccctcgtgcgcgaggacggacgcgaaggcgacgtcttctcg
ctcatcggcccgaagcggttcgacgcgccgtggaaggacatcgaagcccagggctggatc
gcccccgccgactgcgtggaggtccgcgtgaccctcaccgacgccgagcgcatggcgtac
gcggtcgccgagcccgaggaacggtacaagctgtgctcgaccgcgcgcaccaagatcccg
gtcgtgaagtcgatcctcgagcagcaccaggacgccccgacactgatcatcggtgcctac
atcgatcagctcgacgagctcggtgaagcgctcgacgccccggtcatcaagggttcgacg
aagacgaaggaacgcgaggcgctgttcgaccggttccggtcgggcgagctgaaggtgctc
gtcgtgtcgaaggtcgcgaacttctccatcgacctgccggaggcctcggtcgcgatccag
gtgtcgggcaccttcggttcgcgtcaggaggaggcccagcgtctcgggcggctgctgcgt
ccgaagcacgacggcgggcaggcccacttctactccgtggtctcgcgcgacaccctcgac
gccgaatacgccgcgcatcgccagcggttcctcgccgagcagggttacgcgtaccggatc
accgacgccgacgacctgctcggacctcagatcggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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