KEGG   Rhodospirillum rubrum F11: F11_07925
Entry
F11_07925         CDS       T02006                                 
Name
(GenBank) ATP-dependent DNA helicase Rep
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rrf  Rhodospirillum rubrum F11
Pathway
rrf03420  Nucleotide excision repair
rrf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rrf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    F11_07925
   03430 Mismatch repair
    F11_07925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rrf03400]
    F11_07925
Enzymes [BR:rrf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     F11_07925
DNA repair and recombination proteins [BR:rrf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     F11_07925
   MMR (mismatch excision repair)
    Other MMR factors
     F11_07925
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 PcrA_UvrD_tudor AAA_11
Other DBs
NCBI-ProteinID: AEO48052
Position
1809079..1811385
AA seq 768 aa
MDDPFELDEPSPPAPRFQGAEPPWLAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTAR
LAQILATRPVRPWQVLAVTFTNRAAREMRERAGAMIGPMAEQVWLGTFHALGVRMLRRHG
DLVGLRSGFTILDADDQLRLLKQILEAEGIDTKKWTPQAGMGLIQRWKDKGLLPEAVPAG
DGGREYAGGRAVDLYKQYQQRLAVVNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILV
DEYQDTNVAQYLWLRLLARGHGNICCVGDDDQSIYSWRGAEVGNILRFEADFPGATVVRL
ERNYRSTPTILAAASGLIRHNKGRLGKDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDI
ETRQRAGDRLNGMAVLVRAGFQTRAFEERLILAGVPYRVVGGARFYERQEIRDAIAYLRL
VAQPDDSLAFERIINLPRRGLGDASLQTLMRASRMASISLMRAAREAIETDELRPQARKA
LRAFLDDMGRWRSLADAMAPDELCGTVLDESGYLEMWRKDKSPDAQGRVENLKELVSALK
EFESLGAFLEHVSLVMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALD
ENGAEALEEERRLAYVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVERDS
ASGVYGSGAQGYADAPGGWGRLGGPGSWGGGWGNAAPARVPAAGDTPWQTRDRSGDDQPS
LRPGDRVFHDKFGGGTVLAADQGRLEIDFDKAGIKKVMGGFVRKAEGT
NT seq 2307 nt   +upstreamnt  +downstreamnt
atggacgatcccttcgagcttgacgagccgtcgcctcccgccccccgtttccagggagcc
gagccgccgtggcttgccggccttaatcccgagcagcgcgctgccgtcaccaccaccgat
ggcccggtgctggtgctgtcgggggcggggaccggcaagacccgggtgctgacggcccgc
ctcgcccagatcctggccacccggccggtgcggccctggcaggtgctggcggtgaccttc
accaaccgcgccgcccgcgagatgcgcgagcgcgccggggcgatgatcggccccatggcc
gaacaggtgtggcttggcactttccatgccctgggcgtgcgcatgctgcgccgtcacggc
gatttggtcggcttgcgctcgggtttcaccattcttgatgccgacgatcaactgcgcctg
ctcaagcagatcctggaagccgaggggatcgataccaagaaatggacgccccaggcgggg
atggggctgatccagcgctggaaggacaaggggctgctgcccgaggcggttcccgccggc
gacggcgggcgggagtatgcgggcggacgggcggttgatctgtacaagcagtatcaacaa
cggctggcggtggtgaacgccgccgatttcggcgatctgctgctgcactgcctgaccatc
ttcaccaagcatcccgatgttctggccgattattccaagatgtttcactacatcctggtc
gatgagtatcaagataccaacgtcgcccaatacctgtggctgcgcctgctggcgcgcggc
catggcaatatctgctgcgttggcgatgacgatcagtcgatctattcctggcgcggcgcc
gaggttggcaacatcttgcgcttcgaggccgatttccccggggcgacggtggtgcgcctg
gaacgcaattatcgctcgacgccgaccattctggccgccgccagcggcctgatccgccat
aacaaggggcggctgggcaaggatctgcgggcgggggagggcgacgaggccggcgacgcg
gtgatcgtgcgcgggctgtgggatggcgaggaggaggcgcgccgggtcgtcgatgacatc
gagacccgccaacgcgccggcgatcgcctgaacggcatggcggtgctggtgcgtgccggc
tttcagacccgcgccttcgaagagcggttgatcctggccggcgtcccctatcgggtggtc
ggcggcgcgcgtttctacgagcgccaggaaatccgcgacgccatcgcctatctgcgtctg
gtcgcccaacccgacgacagcctggccttcgagcgcattatcaatctgccgcgccgcggc
cttggcgatgccagtctgcagacgctgatgcgggcatcgcggatggcctcgatcagcctg
atgcgcgccgcccgcgaggcgatcgagaccgacgagttgcggccccaggcccgcaaggcc
ttgcgcgctttcctcgacgacatggggcgctggcggtccctggccgatgccatggcgccc
gacgaactctgcgggacggtgcttgatgaaagcggctatctggagatgtggcgcaaggat
aaatcgcccgatgcccaaggccgggtggaaaacctcaaggaactggtttcggcgctgaag
gaattcgaaagcctgggcgccttcctggagcatgtgtcgctggtcatggacaacgaggcc
cgcgccaccgaggacgcggtgaccctgatgacgctgcatgcggccaagggcctggaattc
gatacggtcttcctgcccggctgggaggaggagattttcccccaccgccgcgccctcgac
gaaaacggcgccgaggccctggaggaggagcggcgcttggcctatgtcgggctgacccgg
gcgcgcaaacgggcgatcatcagcttcgtcgccaaccgccgggtctataacgaatggcgg
gcctgcctgcccagccgcttcatcgacgaactgccgcctgaggtggtcgaacgcgacagc
gccagcggcgtttacggctcgggcgctcaaggctatgccgacgcgcccggcggctggggg
cggctgggcggtccgggaagctggggcggtggctggggcaacgccgcgccggcccgcgtg
ccggcggcgggcgacaccccgtggcaaacccgcgaccgcagcggcgacgaccagccgagc
cttcgccccggggaccgggtgttccacgataaattcggtgggggaaccgttctggccgcc
gatcagggccggctggagatcgatttcgataaggctggcatcaagaaggtgatgggggga
ttcgtccgcaaagccgagggcacgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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