KEGG   Roseiflexus sp. RS-1: RoseRS_0330
Entry
RoseRS_0330       CDS       T00542                                 
Name
(GenBank) metal dependent phosphohydrolase
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
rrs  Roseiflexus sp. RS-1
Pathway
rrs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rrs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RoseRS_0330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rrs03019]
    RoseRS_0330
Messenger RNA biogenesis [BR:rrs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RoseRS_0330
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 HDOD DUF4407 KhpA-B_KH Sigma70_r4_2 SCF KH_2
Other DBs
NCBI-ProteinID: ABQ88762
UniProt: A5UQ59
Position
complement(419550..421157)
AA seq 535 aa
MFEPVATARHWAVACCTFTIEQEDVVQWLIWALPALVIGLAIGAGIGILIYKKSVQSQIR
QIEAEARLQLEATRSEQKDLILRATDEALRLRAEAEAQIREARAALAKQEERLQRKEENL
DRKIEGLERRERQLQQRERQMEQLHQEAEQLRQQQRAELERISALSQEEARAIILKRVED
ETRDEAARRIREIEKNVREEADKLARKVISMAIQRCASEYVAEVTVSTVALPSEELKGRI
IGREGRNIRAFEQLTGVDIIVDDTPEAVTLSCHDPVRREVARLALIKLLKDGRIHPTRIE
EVVSKTQQEVEQIMREEGERVAYEANVQGLHPDLIKLLGRLKYRTSYGQNVLQHSLECAL
LAAHIAAEIGANINVAKTAALLHDIGKAVDHEVQGPHALIGAEIARRLGKSPAIVHAIAA
HHNDEEPQTVEAWLVQAVDAISGGRPGARRETLDLYIKRLEALETVATSFTGVQRAFAVQ
AGREVRVMVQPDAIDDLGSIHLARDVAKKIEESLQYPGQIKVTVIRETRAVDYAR
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgtttgagcccgtggccacagcccggcactgggctgtagcatgctgcacctttacaatc
gagcaggaggatgttgtgcaatggctcatatgggccttgcctgccctggtgatcggactt
gccattggcgcaggcataggcattcttatctacaaaaagagtgtacagagccagattcga
cagatcgaggcggaagcccgactgcaactggaagcgacgcgatctgagcagaaagatctc
attttgcgcgcgaccgacgaggcgcttcggctccgcgctgaagccgaggcgcaaatacgc
gaggcgcgcgcagcgctggcgaagcaggaagaacggttgcaacggaaagaggaaaatctt
gaccgcaaaatcgagggactcgaacggcgtgaacgtcaactccagcaacgcgagcgccag
atggagcaacttcatcaggaagctgaacaactgcgtcagcagcaacgcgcggaactcgag
cggatttccgcgttgagccaggaagaagcccgtgcgattattctgaaacgcgtcgaggat
gaaacgcgcgacgaggcggcacgccgtattcgtgaaatcgaaaagaacgttcgcgaagag
gcggataaactggcacgcaaagtgatcagcatggccattcagcggtgcgcttcggagtat
gtcgctgaagtgaccgtctccaccgtcgcgctcccgagtgaagagttgaaaggacgaatc
atcgggcgtgaggggcgcaacattcgcgccttcgagcaacttaccggcgttgatattatt
gtcgatgacacgccggaagcggtgaccctctcgtgccacgatccggtgcggcgggaagtg
gcgcgactggcgttgatcaagttgctcaaggatgggcgcatccatccgacgcggattgaa
gaagtcgtcagcaaaacccagcaggaagtcgaacagatcatgcgcgaagagggcgaacga
gtcgcctacgaagcgaacgttcaggggttgcaccccgacctgatcaaactgctggggcga
ctgaaatatcgcacgagttacgggcagaatgttctgcagcattcgctggagtgcgctctg
ctcgcagcgcatattgctgccgagatcggcgcaaacatcaatgtggcgaaaactgccgcg
ttactgcacgatatcgggaaagcagtcgaccacgaagtgcagggaccgcacgcattgatc
ggtgctgagattgcgcgtcgccttggaaaatcgccggcaattgtgcacgcgattgccgcc
catcataacgatgaagaaccgcaaaccgtcgaagcctggttggtgcaggctgtcgacgcc
atctccggcgggcgccccggagcgcgccgcgaaacgctcgacctgtatatcaagcgcctc
gaagcgctcgaaacggtcgcaacgtcatttacaggcgttcaacgcgcctttgctgttcag
gccgggcgcgaggttcgcgtgatggtgcaaccggatgctatcgacgacctcggcagtatt
caccttgcccgtgatgttgccaaaaagatcgaggagagtcttcagtatcccggccagatc
aaggtgacggtcatccgcgagacgcgcgcagtggactatgcacgttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (42)   

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