KEGG   Rhodococcus rhodochrous: 4535765_01228
Entry
4535765_01228     CDS       T05521                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
rrt  Rhodococcus rhodochrous
Pathway
rrt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rrt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4535765_01228 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rrt03400]
    4535765_01228 (recD)
Enzymes [BR:rrt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     4535765_01228 (recD)
DNA repair and recombination proteins [BR:rrt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     4535765_01228 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 Viral_helicase1 UvrD-helicase Helicase_RecD SH3_13 AAA_22 RecD_N AAA_16 Phageshock_PspD AAA_24 AAA_28
Other DBs
NCBI-ProteinID: SNV14947
Position
1:1309259..1311151
AA seq 630 aa
MIESMTDVRIAQRGKGALRQFNEVGALSAADVHVALRLAALGGEDDPHVHLATALAVRAV
RSGSVCLDLTRFREVTVEEDADGHPVVDPASLPWPRDEDVLAALRRSPLVVGGDRGPLRP
LRLVDTAEGPLLYLDRYFRQEQTIRRVLAERTATFPDLDEERIAATLDELFHHPDDPTRP
ASAPDRQRVAAALAATRPTAVIAGGPGTGKTHTVARILALLTRLYGHELRIGLAAPTGKA
AARLQESVREQETELGLPPNLTAMTVHRMLGWQRGRTRFRYHAGNHLPYDVIVVDETSMV
SLTMMCRLLEAVRPDTRLVLVGDPDQLASVDAGAVLADLVGRPVSGTLDPVFERVVTRDL
AAVGDPAKEKGFSDKERDRLRGGVVRLSRGRRFGEAIADLAIAVREGKADEVLRILRSGD
PKVSFLAPNDLDALRDDIVRSAEEVTKAAEAGEVDPALKSFEKHRLLCAHRDGPAGVQWW
ARQAAEWIGEAVGQRLDPESWYPGRPLLVTANDHDMQIYNGDTGVVVRRGDELVAAFARG
ETPFELRPSQLPAVSTVYAMTIHRSQGSQYGTVSVVLPDSGSALLTRELLYTAITRARSH
VRIIGTEDAVRAGVARQVLRASGLRREIRV
NT seq 1893 nt   +upstreamnt  +downstreamnt
gtgatcgagtccatgaccgacgttcggatcgcccagcgcggcaagggcgctctgcggcag
ttcaacgaggtgggcgcactctccgccgccgacgtgcacgtcgccctgcgactcgcggcg
ctcggcggcgaggacgacccgcacgtgcatctcgccaccgcgctggcggtgcgcgccgtg
cgctccgggtcggtgtgcctcgacctcacgcgtttccgtgaggtcacggtcgaggaggac
gcggatggtcatcccgtcgtcgatcccgcgagcctgccgtggccccgcgacgaggacgtg
ctcgcggcgctgcgtcgcagccctctcgtcgtcggcggcgaccgcgggcctctgcgtccg
ttgcgtctcgtcgacaccgcggaaggtccgctgctgtatctcgaccggtacttccggcag
gagcagacgatccgccgggtgctcgccgaacgtacggcgaccttcccggacctcgacgag
gagcgcatcgcggcgacgctcgacgagctgttccaccatcccgacgatcccacccggccc
gcgtcggcacccgaccgtcagcgcgtcgcggcggcgctcgcggccacccgcccgaccgcg
gtgatcgcgggcggaccgggcaccggcaagacccacaccgtggcgcggatcctcgcgctg
ctcacccgcctgtacggtcacgaactgcgcatcggcctggccgctcccaccggcaaggcc
gctgcgcgcctgcaggaatcggtgcgcgagcaggagaccgagctgggtctgccgccgaat
ctcaccgccatgaccgtgcaccgcatgctcggctggcagcgcggccgcacccgcttccgc
taccacgcgggcaatcatctgccgtacgacgtgatcgtcgtcgacgagacgtcgatggtg
tcgttgacgatgatgtgccgcctgctcgaggcggtgcgtcccgacacccggctcgtcctc
gtcggcgaccccgaccagctcgcttccgtcgacgccggtgcggtactggccgacctcgtg
gggcgaccggtcagcggcaccctcgatccggtcttcgagcgggtcgtcacccgcgatctg
gcagcggttggagatcctgccaaggaaaagggcttctcggacaaggagcgcgaccggttg
cgtggcggcgttgtgcgcctcagtcggggacgcaggttcggtgaagcgatcgcggacctg
gccattgcggtacgcgagggtaaggcggatgaggtactgaggatcctgcgcagcggtgat
ccgaaggtgtcgttcctcgctcccaacgatctcgacgccctgcgcgacgacatcgtccgc
tccgccgaggaggtcaccaaggccgccgaggcgggcgaggtggatccggcgctgaagagc
ttcgagaaacaccgattgttgtgcgcgcaccgcgacggcccggccggtgtgcagtggtgg
gcgcggcaggccgccgaatggatcggggaggccgtggggcagcgcctcgatcccgagagc
tggtatcccggccggccgctgctcgtcaccgcgaacgaccacgacatgcagatctacaac
ggcgacaccggcgtggtcgtgcggcgcggcgacgaactcgtcgcggcgttcgcgcgcggc
gagacgccgttcgaactgcgcccgagtcagctgcccgcggtgagcaccgtctacgcgatg
acgatccaccgcagccagggtagtcagtacggcaccgtctcggtggtgctgcccgattcc
ggatcggcgctgctcacccgcgaactgctgtacaccgcgatcacgcgtgcgcggtcgcac
gtgcggatcatcggaaccgaggacgcggtacgcgcgggcgtggcacggcaggtgctccga
gcgagcgggctgcggcgggagatccgcgtgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (14)   
   Pfam (14)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system