KEGG   Raphanus sativus (radish): 108844538
Entry
108844538         CDS       T06014                                 
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 4
  KO
K15692  E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27]
Organism
rsz  Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rsz04121]
    108844538
Enzymes [BR:rsz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108844538
Ubiquitin system [BR:rsz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108844538
SSDB
Motif
Pfam: zf-RING_2 PA zf-RING_11 zf-C3HC4 zf-C3HC4_2 zf-rbx1 zf-RING_5 zf-RING_UBOX zf-C3HC4_3 zf-ANAPC11 Prok-RING_4 NUT zf-RING_16 M3 Pirin_C zf-C3H2C3
Other DBs
NCBI-GeneID: 108844538
NCBI-ProteinID: XP_018473306
UniProt: A0A6J0MP43
Position
3:complement(4782171..4784325)
AA seq 436 aa
MTRALILILSLLLIPHLASAKVMLIGKNTSLSFDDIEADFTPMIKKSDQCGVLYVAEPLD
ACSDLVNTVSIPEEGSITSPSYVLIIRGGCSFEEKIRNAQKAGYKAAIVYNNEDYGFLIS
MAGNPSGVVIYGTFVSKSTGEILKRYAGRTDMELWLVPSFETSAWSIMAISFISLLAMSA
VLATCFFVRRHRIRRRRVRLMGGGEFARMGIDTIRRMPTTVFNGVCEEASTSISCVICIE
DYRIGEKLRILPCNHKFHAKCVDLWLGQRRSFCPVCKRDARIININMPPSPTEHTPLLSP
SVTPTSSFLLSSSPSTSLVQSSYDTPSSSSTMQLHTGPMYLSHSRSHTSFQNGSFSGSLP
ISVSRSSVDLRNAVSRGSYNSPRSAHSRYTHILSPGNASTSWVVGSVSSQREHSFTINDS
QRSLSHFASASSLPGC
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgactcgtgctttgattttaatcttatctctgcttctaatccctcacttggcttctgcg
aaagttatgttgatcgggaagaacacatctctctccttcgacgacatcgaagccgacttt
acaccgatgattaagaaatcagatcagtgtggggtactgtacgtagcagagccactcgat
gcttgttcagatttggttaacacagtgtctataccagaagaaggatcaatcacttctcct
tcctatgtgttaatcatccgcggtggctgtagtttcgaagaaaagatcagaaacgcccag
aaggctggttataaagcagctattgtctacaacaatgaagattatggtttcttaatatca
atggctgggaacccatctggtgtggttatatacggaacctttgtgtcgaaatcgactgga
gaaatacttaaaaggtatgcgggtcgtaccgatatggagctgtggctcgtaccgagcttc
gagacttcagcttggtctatcatggctatctctttcatatctcttcttgcaatgtctgct
gtcctcgccacttgcttctttgtccgtaggcatcggattagaaggcggcgtgttaggtta
atgggtggtggagagtttgctcgtatggggatagacaccatcagaaggatgcctactaca
gtctttaacggtgtttgtgaagaagcttcaacgtctatctcttgtgttatttgtattgaa
gactaccgtattggtgaaaagctaaggatcttaccttgcaatcacaagtttcatgctaaa
tgtgttgatttgtggcttggccaaaggagatccttttgtccggtttgtaaacgggatgca
agaattatcaacattaatatgcctccatcaccaacagaacacacacctttgctttctcct
agcgtgactccgacctcgtcttttcttttatcatcatcaccttccacaagcttagttcag
tcatcttatgatactccttcatcttcctcaacaatgcagctacatacaggccctatgtat
ctctcccactctcgctcccatacaagcttccaaaacgggtcattcagtggttcactgcct
atatcggttagccgaagctcagtagatctcaggaatgccgtttcccgaggatcttacaac
tcacctcgctctgcccactcaagatatacgcatatacttagcccggggaatgcatcaacg
agctgggttgttgggtcggtatcaagccagcgcgagcattcatttactattaatgactcg
caaaggtctctctctcactttgcctctgctagttctctaccaggctgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (16)   
   Pfam (16)   
All databases (29)   

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