KEGG   Rhodomicrobium vannielii: Rvan_2832
Entry
Rvan_2832         CDS       T01353                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rva  Rhodomicrobium vannielii
Brite
KEGG Orthology (KO) [BR:rva00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rva02048]
    Rvan_2832
Enzymes [BR:rva01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Rvan_2832
Prokaryotic defense system [BR:rva02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Rvan_2832
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1RH-like_C DEAD
Other DBs
NCBI-ProteinID: ADP72040
UniProt: E3I8R1
Position
complement(3079838..3082903)
AA seq 1021 aa
MSAPLSSRPLGQPESATQARVIALLRDTLGYDYLGNWKDRDGNRNVEEGLLRTFLRRTRP
GDDPLIARAIAEFQRVAGDQSRSLYDVNKSVYELLRYGVKVAPAAGENHETVWLIDWKNP
AANHFAVAEEVTVKGFDAKAATKRPDIVLYVNGIALGVLELKRSTKSMAEGIRQNLDNQK
KQFIRPFFTTMQLVMAGNDTEGLRYGTIETTERYYLAWKEDSAIENPLDRALSQLCHKAR
FLELLHDFIVFDSGTKKTCRHNQYFGVRAAQKRVRAREGGIIWHTQGSGKSLTMVWLAKW
IRENVTGARVAIITDRTELDEQIEKVFVGVQEKIYRTTSGADLIAKLADTTPWLMCSLIH
KFGVADDADIAEYVTELTTAVSPGFKPQGDIYVFVDECHRTQSGQLHDAMKAILPDAMFI
GFTGTPLLKADKATSLEKFGTYIHTYKFDEAVADRVVLDLRYEARDIDQSISSPDKIDQW
FEAKTKGLTNFAKAQLKQRWGTLQKVMSSQSRLEKIVADILMDMNTKDRLVSGRGNAMIV
SGSIYQACKLYQLFEETELAGKCAIITSYRPAIADTKGETTGEGLTERLQKYEIYNRMLN
GKTPEKFETEVKKKFVDEPGQMKLLIVVDKLLTGFDAPPATYLYIDKHMQDHGLFQAICR
VNRLDGDDKDYGYIVDYKDLFKSLEGSIKDYASGAFDAYAPEDVKGLLVDRLEDGHKRLE
EALEALRALCEPVPSPRDLPAHHRFFCGSVDADNKAALKESEPKRLLLYRLVSSLLRAYT
NLANEMEEAGYTNQEAQAIKAEVKHFEDVRAAVKLKSGDYIDLKMYEPAMRHLIDAYIRA
EDSLKLSAFDDLSLVDMIVKSGVKAIDALPESIAKDEGAVAETIENNVRKIITDEEPVNP
AYYQKMSDLLDALIKRRREGALEYKAYLDEIVELARKVKMVDPGPTYPIGIDTPAKRALF
DNLQDENLAVAIDAAIRQHKPDDFRGHPIKERVVRRAIAQALKDDARLDEIFELVKAQSE
Y
NT seq 3066 nt   +upstreamnt  +downstreamnt
atgagcgcgcccctttcatcccgtcccctcggccagccagaaagcgccacgcaggcccgc
gttatcgccttgctgcgcgacacgctcggctatgactatctcggcaattggaaggatcgc
gacggcaatcgcaacgttgaggaggggctgctgcgcaccttcttgcggcgcacgcgcccc
ggcgacgatcccctcatcgcgcgcgccatcgcggaatttcagcgtgtggcgggcgaccag
tcccgaagtctctacgacgtgaacaaatccgtctacgagctgctgcgctatggcgtgaaa
gtcgcacccgccgccggcgagaaccacgaaaccgtctggctcatcgattggaagaacccg
gccgccaaccatttcgccgtcgccgaggaagtgaccgtgaagggcttcgacgccaaggcc
gccacgaagcggccggacatcgtgctctatgtgaacggcatcgcgctcggcgtcctggaa
ttgaagcgctccacaaagtcgatggccgagggcatccgccagaacctcgacaaccagaag
aagcagttcatccgccccttcttcacgaccatgcagctcgtcatggctgggaacgacacc
gagggcctgcgctacgggaccattgagacgaccgagcgctattacctcgcctggaaggaa
gacagcgccatcgagaacccgctcgaccgcgcgctgagccagctctgccataaggcccgc
ttcctcgaactcctgcacgatttcatcgtgttcgattccgggaccaagaagacctgccgg
cacaatcaatatttcggcgtgcgcgccgcgcaaaagcgcgtcagagcgcgcgagggcggc
atcatctggcacacgcaaggctccggcaaaagcctcaccatggtgtggctcgcgaagtgg
atccgcgagaatgtgacgggcgcgcgcgtcgcgatcatcaccgaccgtacggaactcgac
gagcagatcgagaaggttttcgtcggcgtccaggagaagatttatagaacgacgagcggc
gcggacctcatcgccaagctcgccgacacgacgccatggctgatgtgctcgctcatccac
aaattcggcgtggccgacgacgccgacatcgccgaatacgtcacagaactcaccacggcg
gtaagccccggcttcaagccgcagggcgacatctacgtcttcgtcgacgaatgtcaccgg
acccaatccgggcagctccacgatgcgatgaaggccatcctgccggacgcgatgttcatc
ggctttacggggacgccgctattgaaggccgataaggcgacaagcctggagaaattcgga
acctacatccacacctacaagttcgatgaagcagtcgccgaccgtgtcgtgctcgatctg
cgctatgaggcgcgcgatatcgatcaaagtatctcatcgccggacaagatcgaccaatgg
ttcgaggcgaagacaaaggggctgaccaacttcgcgaaggcgcagctcaaacagcgctgg
ggcacgcttcaaaaggtgatgtcgagccagtccaggctggaaaagatcgtcgccgacatc
ctcatggacatgaacaccaaggaccgcctcgtcagcggccgcggcaacgccatgatcgtc
tcgggcagcatctatcaggcgtgcaagctctatcagctgtttgaggaaaccgagctggcc
ggcaagtgcgccatcatcacatcctataggcccgcgattgccgacacaaagggcgagacg
acgggcgaggggctgacggagcgcctgcagaagtacgagatctacaaccgaatgctcaac
ggcaagacgcccgaaaaattcgagacggaggtgaagaagaagttcgtcgacgagccggga
caaatgaagctgctcatcgtcgtcgataagcttctcaccgggttcgacgcgccgccggcg
acctatctctacatcgacaagcacatgcaggatcacggcctcttccaggccatttgccgg
gttaaccgcctcgatggcgacgacaaggattacggctacatcgtcgactacaaagacctg
ttcaagagcctggaaggctcgatcaaggactacgcgtccggcgccttcgacgcctatgca
cccgaggacgtgaaggggctcctcgtcgatcgcctcgaggatgggcataagcgcctcgaa
gaggccctggaggcgctgagggcgctttgtgaaccggttccctcgccacgagatttaccg
gcccaccatcgctttttctgcggctctgtcgatgcagacaacaaggcggcgctgaaagag
agcgagccgaagaggcttcttctttatcggctcgtctcaagcctgctccgagcctacacg
aatctcgcaaacgaaatggaagaagccggatataccaaccaggaggcgcaggccatcaag
gccgaggtgaagcacttcgaagatgtccgcgcggccgtgaaactcaagagcggcgactac
atcgatctgaagatgtacgagcccgccatgcggcatctcatcgacgcctatatccgtgcc
gaggacagcttgaaattatcggccttcgacgatctctcgctggtggacatgatcgtgaag
agcggcgtgaaggccatcgacgcccttcccgaaagcatcgcaaaggacgaaggagcggtc
gccgaaacaatcgagaacaacgtccgcaagatcatcaccgacgaagagccagtcaacccg
gcatactatcagaagatgtccgacctcttggacgcgctgatcaagcggcgccgggaaggc
gccctggaatacaaagcctacctcgacgagattgttgaactggcccgcaaggtgaagatg
gtggatcccggacccacctatcccatcggcatcgatacgcctgcgaaaagggctctcttc
gataaccttcaggatgagaaccttgccgtcgctattgacgccgctatccggcaacataag
cccgatgatttccgaggccatccaatcaaagagagagtggtacgcagggcaatcgctcag
gctctcaaagatgacgcccgccttgacgaaatcttcgagctagtgaaggcccagagtgaa
tactga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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