KEGG   Salicibibacter halophilus: EPH95_12475
Entry
EPH95_12475       CDS       T06083                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sale  Salicibibacter halophilus
Pathway
sale03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sale00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EPH95_12475 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sale03019]
    EPH95_12475 (rnr)
   03016 Transfer RNA biogenesis [BR:sale03016]
    EPH95_12475 (rnr)
Enzymes [BR:sale01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EPH95_12475 (rnr)
Messenger RNA biogenesis [BR:sale03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EPH95_12475 (rnr)
Transfer RNA biogenesis [BR:sale03016]
 Prokaryotic type
  tRNA degradation factors
   EPH95_12475 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HP0268 Put_DNA-bind_N TFIIE_beta
Other DBs
NCBI-ProteinID: QDI91893
UniProt: A0A514LJA3
Position
2562107..2564395
AA seq 762 aa
MVEETIEPVLTHIRDEAKKPVSVHELQEALQMDAAKDRKDLMKTLNHLEETGQLIRTRNN
RYGLPEKMNLIKGTVQAHRKGFAFILPEDSGQDDVYVAPGDLAGAMNRDTVFARIQSRSG
GQSGDRSEGAVVRILERGTTRVVGTYLDYERYGFVTPDDKRLYDDVFVPKGQEHGAADGH
KVVLELTKYPEGRMGAEGVVVTILGHKNDPGTDILSIIHKHELPGEFPEVVQEEAAAAPD
EIEKDEIDRRRDLREQTIVTIDGADAKDLDDAVTVKRLDNGNYRLGVHIADVSYYVEEGS
AIDVEAEDRGTSSYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEISPEGDVVDHDI
FESVIRTSARMTYTEVKEILVDQNEETRERYRSLVPLFEDMENLAAILRNKRFERGAIDF
DFKEAKVEMDEDGHPTDVRIIERSVAERLIEEFMLAANETIAEHFHWLKLPFIYRIHEDP
DEDKLQSFLEFITSFGYVMKGRGDSIHPGALQEVLQAVKGEAEETVINTVMLRSMQQAKY
DPTNVGHFGLAADFYTHFTSPIRRYPDLIVHRLIRTYLLQNKTGKKTVDHWQGRLPDIAK
HSSAMERRSVDAERDVDDLKKAEFMKDKIGEEFPAFVSGAANFGLFIRLENTIEGLVHVS
HLTDDYYHYDERQFALIGERTANMYRIGDRVDVRVLDVNMDEPNIDFEIVGMPERKRRKP
SEGQKVIQGERGRPKDHKPPKNNTKSKNGGKKGKKKKKSKRS
NT seq 2289 nt   +upstreamnt  +downstreamnt
atggtggaagaaactatagaaccggtgctcacccatattcgtgacgaagcaaaaaaaccg
gtgagcgtacatgaattgcaagaagcgttacaaatggatgctgcaaaagatcgaaaagat
ttaatgaaaacgttgaatcatttggaggagaccggccagttaattcgtacgcgtaacaac
cgctatggcctaccggaaaaaatgaatttgattaaagggacggtacaagcccatcgcaaa
ggttttgcttttatattgcctgaagattcagggcaagatgatgtgtatgtggcacccggg
gatcttgccggtgccatgaacagagacacggtttttgcccgcattcaatcccggtcggga
gggcaatccggtgatcgttccgaaggtgctgtcgttcgcattctcgaaaggggcacgacg
cgggttgtaggaacatatctcgactatgaacgttatgggtttgttaccccggatgataaa
cgtttatatgacgatgtttttgttcctaaaggacaggagcacggagccgccgacggacat
aaagtggtgcttgaactcacgaaatatccggaagggcgtatgggggctgaaggggtcgtc
gttaccattctcgggcataaaaacgatcccgggaccgatattttgtcgattattcataaa
catgaactgcccggggaattcccggaagtggtacaggaagaagcagccgccgcgcctgac
gagattgaaaaggatgaaatagaccgccgccgtgatttgcgggagcaaacgattgtcacc
atcgatggtgccgatgcgaaagaccttgatgatgccgtaaccgtgaagcgcctggataac
ggcaattatcgcctcggtgttcatattgccgatgtcagctattatgtggaagaaggttct
gccattgacgtggaagccgaagatcgcgggacgagttcttacctcgttgatcgcgtcatc
ccaatgatcccgcaccggttgtccaatggcatctgttccttgaatccgaaagtggacaga
ctcactatctcctgtgaaatggagattagccctgaaggggacgtcgttgatcatgacatt
ttcgagagtgtcatccgcacatctgcacgcatgacgtacacggaagtgaaagaaattctc
gtcgaccaaaatgaagagacgagagagcggtatcgatccctcgttcccctttttgaagac
atggaaaacttggctgctattttaagaaacaagcgttttgaacgtggagcgattgatttt
gatttcaaggaagcgaaagtcgaaatggatgaggacggccatcccacagatgtccgtatt
atcgaacgttctgtagccgagcgtttaatcgaagagttcatgctggcggcaaatgaaacc
attgccgagcattttcattggttgaagcttccgtttatttaccgtattcacgaagatccg
gacgaggataaattgcaaagttttctcgagttcattacgagctttggctatgtgatgaaa
gggcgcggagattccattcatcccggagccctgcaggaagtgttgcaagcggtaaaaggg
gaagcggaagaaacggtcattaatacggtcatgctgcgatccatgcaacaagccaagtac
gatcccacaaatgtcgggcactttgggttggctgcggatttttacacgcactttacctcg
ccgatccgccgctatccggatttgattgtgcatcgtttgattcgcacgtacttgttgcaa
aataaaaccggtaaaaagacagtggaccattggcaaggacgtcttccggatattgctaaa
cattcgtcggccatggaacgccgttccgttgacgccgaacgggatgtggatgatttaaaa
aaagctgagttcatgaaagacaagatcggcgaagagtttccggcttttgtcagcggtgca
gcaaattttggcttgttcatccgtttggaaaataccattgaaggccttgtccacgtcagt
catttgaccgatgattattatcattatgacgaacgccaattcgcgctgattggagagcga
accgcgaacatgtaccgtatcggcgaccgcgtagacgtacgcgtcctcgatgtgaacatg
gatgagccgaacattgattttgaaatcgtcggcatgccggaacggaaaagacgcaaacca
tcggaaggccaaaaggtcattcaaggcgaacgcggacgcccgaaagatcataaaccgccg
aaaaataatacgaaaagcaaaaacgggggcaagaaaggaaagaaaaagaagaaaagtaaa
cggtcgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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