KEGG   Shewanella algae: BS332_21120
Entry
BS332_21120       CDS       T05622                                 
Name
(GenBank) hypothetical protein
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
salg  Shewanella algae
Pathway
salg03030  DNA replication
salg03430  Mismatch repair
salg03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:salg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BS332_21120
   03430 Mismatch repair
    BS332_21120
   03440 Homologous recombination
    BS332_21120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:salg03032]
    BS332_21120
   03400 DNA repair and recombination proteins [BR:salg03400]
    BS332_21120
Enzymes [BR:salg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BS332_21120
DNA replication proteins [BR:salg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BS332_21120
DNA repair and recombination proteins [BR:salg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BS332_21120
SSDB
Motif
Pfam: DNA_pol3_delta2 DNA_pol3_gamma3 DNA_pol3_tau_5 AAA AAA_22 AAA_5 RuvB_N AAA_16 DNA_pol3_delta AAA_14 AAA_19 ResIII AAA_2 PIF1 TniB AAA_18 AAA_7 AAA_assoc_2 TsaE AAA_24 nSTAND3
Other DBs
NCBI-ProteinID: AXQ16346
Position
complement(4658951..4661839)
AA seq 962 aa
MSYQVLARKWRPASFDQVVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAK
GLNCETGITAKPCGQCSACQEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTQGRF
KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLDQ
TEMAGQLQHILQSEGLKFETSALTLLARAANGSMRDALSLTDQAIAFGAGQVMLEQVQTM
LGAIDERQVLALFDALLTGDIAKMMQEVAKVLAFGADAAEVLRSLLELLHQITLSQFAPA
AANLSLFGPRINHYGENLTPEQVQLYYQLLLSGRKELPYAPDPKSGLEMALLRAVAFVPE
TPPKRWQRGEVADLSALDDSSSAAAPATVGALNQPLASNNADEIKPQAASAQSVTSQVVK
AQAEKMQAAKMPTQVSPAAETQASNIDSQMAADEGEDADEQALLAEQALLLSQAGSMGFR
NEASEPAKVAESLPARQPTAAKPHEPVSQAETSTISDEQQSQDDFYAAMGYSLQGEGQDS
SLDFYQQQMSMDGQMPSAADKSTSEASLSNKPSSEPVPADANIDSGSDDILGDDLLDQVL
ATRDLLLSDIEAASPKDGEEKKPLLERRSAAAAPESDAVAATQSEAAAELGNSPELSKSP
ELSKSPERVDSLEPSNSPEPSQAETQTPVAGEVPSKSGPNYVAALKEDRPPWEDAPEGAV
AAGREAMQDSETVQNVAFPQAESESVPEFLPEPEPEPQHTAQQTAQEAAPQEIDEPGHEL
KNELGQGSGQSATVNTVNTGARPASEPCQALGPESAEAFAHAPPSGHPQDLYWYKLMSAL
EIGGRVRQLAVNSVCERIAEPLPLLLKPDQKHLAADSAIKQLEEALSKLFGKPCRTEIVV
GVDDQRETPLEIRHRFHQELLSGAHASLMNDENIQWLVSHMGAELDQDTLGYPPSCSVNG
LI
NT seq 2889 nt   +upstreamnt  +downstreamnt
atgtcctatcaggtactagccagaaaatggcgacctgccagttttgatcaggtagtcggc
caatctcatgtcttgcatgcattgaccaatgccctgagtcagcaacgactgcaccatgcc
tatctgtttaccggtacccgcggcgtcggcaagaccagtttggcgcgcctgtttgccaaa
gggctcaactgcgaaacagggatcaccgctaagccatgtggccaatgcagtgcctgtcag
gaaattgcccaggggcgttttgtcgaccttatcgaagtcgatgcggcttcccgtaccaag
gtagatgatacccgcgaactgctggataatgttcagtatcgcccaacccagggacgtttc
aaggtttacctgatagacgaagttcatatgctgtcccgcagcagtttcaatgcgctgctt
aagacactggaagaacccccagagcacgtcaaattcctgctggccaccacagatccgcaa
aagctgccggtgacagtactgtcccgctgcctgcaatttaacctaaagagtctggatcag
acggagatggccggccagttgcagcatattttgcaaagcgaaggtcttaagtttgaaact
tctgcgctgacgcttctggcgcgagccgccaacggcagtatgcgagatgccctgagcctg
acagatcaggctatcgcctttggagccgggcaagtgatgctggagcaggtacaaaccatg
ctcggcgccatagatgagcgccaggtgctggcgctgtttgatgcgctcctcacaggcgac
atcgccaaaatgatgcaggaagtggccaaggtgctggcatttggcgccgatgctgccgaa
gtgctgcgtagcttgctggagctcttgcatcagataaccctgagtcagtttgcgccggcg
gcggccaatctgtcgctgtttggtcccagaattaaccactatggtgaaaacctcaccccc
gagcaggtgcagctctattaccagttgctgctcagcggtcgcaaggagctgccttatgca
ccggatcccaagtcagggctggagatggcgttactcagagccgttgcctttgtgccggaa
acgccgcccaaacgctggcaaaggggtgaagtcgccgatctgtctgccttggatgacagc
agcagtgccgctgcgcctgcgacggtcggggcgctgaatcaacccctggcaagcaataac
gccgatgagataaaacctcaagccgcctctgctcaatctgttacaagccaggttgttaaa
gcgcaagccgaaaagatgcaagctgccaagatgccaacacaggtaagcccggcggctgag
acgcaggcgagcaatattgactcacagatggctgccgatgagggcgaagatgcagacgaa
caggccttattggccgaacaagcgctgctgttatcccaggccggtagcatggggttccgg
aatgaggcctctgagcctgctaaagtggccgagtctctgccggcacggcaaccgactgca
gctaagcctcacgagcccgtgtcacaagctgaaacctcgactattagtgatgagcagcaa
tcccaggatgacttctatgctgccatgggctattcactgcaaggtgaagggcaggatagc
agcctggatttttatcagcagcagatgtcgatggacggccaaatgccatccgctgctgac
aagagtacctccgaggcatcgctatcaaataagccatcaagcgagccagtgcctgccgat
gccaacatagactcgggcagcgatgacatcttgggtgatgatctgctcgatcaggtgctt
gccacccgggatttgctgctcagtgatatagaggccgccagccccaaggacggtgaagaa
aaaaagcctttgctggagcgccgcagcgcggccgcagcacctgagtccgatgctgtagcg
gccactcagtcagaagcggcagcagagctaggaaacagccctgagctgagcaaaagccct
gagctgagcaaaagccctgagcgggtagacagccttgaaccaagcaatagccctgagcct
tcccaagcagaaacacaaactcctgttgccggggaggtgccctccaaatctggcccaaat
tatgttgcggcgctcaaggaggacaggccaccatgggaagatgccccagagggtgcggtt
gcagcgggtcgcgaggcaatgcaagacagtgaaacggttcaaaacgtggctttcccacaa
gccgaatcagagtctgtgcctgagtttttgcctgagcctgaacctgagccacaacatacc
gcgcagcagacagcacaggaagctgcaccacaggagatagacgagccgggacatgagctg
aaaaatgagcttgggcagggatctggccaaagcgctacagtaaacactgtaaacacaggg
gctcggcctgcatccgagccgtgtcaagcattaggcccggagtccgccgaggccttcgcc
catgctccgcccagtggtcatccacaggatctctattggtataaattgatgtcggcgctg
gaaatcggcggccgggttcggcaactggcggtgaactcagtctgtgagcggatagctgaa
ccgctgcccttgctgctcaagccggatcagaagcacttggcggcagattcggccatcaaa
cagctcgaagaggcgctttccaaactgtttgggaaaccttgccgcacagagattgtcgta
ggagtagatgaccaaagggaaacgccgttggaaattcgtcatcgttttcatcaggaactc
ctgagcggggctcatgcttcattgatgaatgatgaaaacattcaatggcttgtcagtcat
atgggggccgaactggatcaggatactctagggtatcccccgagctgctcagtcaacggg
ctaatttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (21)   
   Pfam (21)   
All databases (33)   

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