KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111978953
Entry
111978953         CDS       T05762                                 
Name
(RefSeq) collagen alpha-3(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510  Focal adhesion
salp04512  ECM-receptor interaction
salp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:salp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    111978953
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    111978953
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111978953
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:salp04147]
    111978953
   00536 Glycosaminoglycan binding proteins [BR:salp00536]
    111978953
Exosome [BR:salp04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   111978953
Glycosaminoglycan binding proteins [BR:salp00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   111978953
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 111978953
NCBI-ProteinID: XP_023864966
Position
LG19:complement(35791711..35843455)
AA seq 1021 aa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NT seq 3066 nt   +upstreamnt  +downstreamnt
atgaaaggtgcgaaaggggaggtctgtagtttgtgtacgggaaaaggatctggagagcct
ggactcccaggttcccctggccagcctggactcccaggctttagtgcaggaccaggaccc
caaggagagccaggattcaaaggacccccgggatcacctggacaacagggtctccatggc
ccttcaggtgttccgggacgcccagggccaaaaggaaattcaggttcccgcaaccaccag
gggataaagggagagaaaggagccccaggaccagctggcagatcagggctggacggccta
tacggggcccctggcttccgtggacgcaagggccaacaaggccctaagggtgatccatac
tatgggccactgggtctgaagggagatattggtgtcccaggccctcccggaccgcaggga
tacccaggaccagacggttcaccaggtccagtaggcataggaccgcttggtccctcagga
cctaaaggcaatagtggggtaccaggtctacctggtacacctggttaccaaggtcagaag
ggcgagccctgcagcagtgtggctgaccagggagtcccaggcctaccgggaaaggcaggg
ctgccgggcacacagggccccccaggtcctcgtggtggtgctggtaacccgggggagaaa
ggggaccgtggtgtattctccacccttggaagacgaggacccactggacagaaaggtgac
aaagggcagccgggacgcccaagtacctctggaagtggctgtcctggacgacccggcgta
atgggattccttggggctcaagggccaaagggtgatgctgggtttgagatcctaggtcca
gccggccttaaaggtttcccaggtggtgttggggcccagggccctcctggagatccagga
gtactgggccgaccagggagtccgggaccacccggcctcaatgggtcctcaggccccaaa
ggaagtaaaggtgtagatggttcccaaggacctcctggttacgcaagtacttgctgtact
gaaggcccaaccggaccaccagggctgtcaggcagacctggacccccaggtgctaatgga
gagattggttcgcgcggggaccctggcgccccggggtttggaagttcaggcccggctggt
gaccctgggccccctggggcctccgaacccggagtgcagggcctgactggacagatggga
ggcagagggagagacgggttaccaggtgtaccaggtcctagaggtgacccaggaagacct
ggaccgggccctgacggcccacctggagctgaaggaccacccggtcccaaaggatcggtt
ggccctgatggggagaaaggtcacagtggtgtaccaggctgtgtggggggcgacgggccc
ccaggcccttgtggaccatcatccaatacagtcatacacgggcccccaggggaccctggg
aaacgtggtctgcctggtttccatggtgctaaaggacatcctggatatcctggacccaaa
ggcattgatgggagggacggtgacccaggaaatgggccgagaggctgtccaggtgatcct
ggggctgatggactgtgctcaggaggaccaggcccatctggactcagaggaaatatgggg
ctcatgggtctaccagggccccgtggaataaagggaggcccgggttccaatggagaccca
ggactagacggtacgcccggtccatgcgggccaaaaggaactaaaggagagtccagttgt
gcaaaaccaggcctcacaggatcacctggacagaagggtgagccagccttgtataacaaa
catgactccaaaggaatgaaaggctctcctggttacgcaggtcctccaggctcccacgga
ccctctggagccaaaggagacccaggacatcatggagcccgaggtcctgccggccaacca
ggtaccgatggtcccccaggcctcccaggactccctgcgtcacatggagctccaggacaa
ccagggttacctggtcctcctggtccctgtggtcctaaaggtaaccagggttacgatggc
attcctggacctgctggtcagaagggagagacactgattgtgggatcaactcctggccca
cgtggaaagaatggactgccaggtccaaagggagatgtgggtttccctggacccactcct
ccggagcccccagggtgtccgggagatcggggccaccgaggcaacgaaggaccccagggt
tctcgcgggaggccagggtctggtggtgtttgtgtcaacgggctgaaaggagatgctggt
cccaaaggcagccctgggagccctggacagcagggtctgaagggaaagccagggcctgga
ggctatgaatgtaaaggggacaggggagacctgggcgctccagggggcagaggcttggac
gggcccacaggagacgtcggacctccagggctacggggaccaggagccatccctggacct
ccaggaccaatcggttccccaggtcaccctggaaccccaggagtccccggtgagatgggt
gatcctagttatagccctggcccgaaaggaccaaatggatccaaaggccgaccaggacca
ccaggttgtccggggcttaacgtgacagtgagacccgaaaagggggatccgggcccaccc
ggttacaccggtaaccagggacctccaggtcccagtgggtcgtcaggacaaccaggatta
acagggcccccaggccctgagggtcaacagggacacagccctccaggcttgcctggcttc
cccggacgcaagggagacaaaggatcgccaggactgacagggaggttgggcttccagggg
attccgggtcagaagggttctcttggcccaaggggctgcaacacgacaggcctggctgac
agtttcctgctggcccgacacagccagaccatcagagtgcctaactgcccgcaaggcacc
atcctcatctactctggatactctctgctcttcatcaatggcaacaaaagggctcacgga
caagacctgggctccgtgggcagcttgcctgcctcgtttctccaccatgcccttcctgtt
ctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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