KEGG   Snodgrassella alvi: SALWKB2_1037
Entry
SALWKB2_1037      CDS       T03063                                 
Name
(GenBank) Excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
salv  Snodgrassella alvi
Pathway
salv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:salv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SALWKB2_1037
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:salv03400]
    SALWKB2_1037
DNA repair and recombination proteins [BR:salv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SALWKB2_1037
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SALWKB2_1037
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_16 AAA_29 AAA_23 RsgA_GTPase nSTAND1 AAA_21 DnaJ_CXXCXGXG AAA_22 AAA_25 BCA_ABC_TP_C nSTAND3 cobW T2SSE Viral_helicase1
Other DBs
NCBI-ProteinID: AHN28419
UniProt: X2H4S7
Position
complement(1143455..1146283)
AA seq 942 aa
MSDNDTIHIRGARTHNLKNIDLDIPRHQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESL
SAYARQFLQMMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGT
PYCPEHNLPLSSQTVSQMVDHILNLPEESRVMILAPAVRGRKGEFLEYFADLQVQGFARV
RVDGEVYAIEEVPKLQKNIKHDIDVVIDRVKVRADIKQRLAESFETALRLGNERALAIEM
DSGKEHWFSARFACPVCSYSLQELEPRLFSFNNPVGACPSCDGLGSMDYFDPERVVMHPD
LSLAAGAIKGWDKRNTFYFQMIQSLGHHFKFDVNTPFNELKEEIRNIILYGSGKEQIEFT
YLSERGTKFTRSHPFEGILPNLERRYRETDSATVREELAQYQSHRACPACGGARLRTEAR
YVYIGGKSLPDVNAWPLTATLDFFQNLNLEGNKKQIAEKILKEINERLGFLINVGLNYLS
LARSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLDTLKHLRDLGN
SVIVVEHDEDAIRAADFVVDMGPGAGEHGGQVIIAASPEKVAACKESITGQYLSGEKAIS
MPEQRSPVDKERLLILSGASGNNLKNVTLTLPLGLITCITGVSGSGKSTLINDTLAKITT
RELNRASEEPAPYEDIKGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPL
SRERGYTVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCEVCHGKRYNRETLEIQY
KGKNISEILEMTVEEACTFFDAVPTVKRKLQTLLDVGLGYVRLGQSATTLSGGEAQRVKL
ALELSKRDTGRTLYILDEPTTGLHFADIALLLDVIHRLKGKGNSIVIIEHNLDVIKTADY
IVDLGPEGGDGGGTIIAEGTPEEVAANPKSYTGKYLKPMLGK
NT seq 2829 nt   +upstreamnt  +downstreamnt
atgtcagataacgatacgattcatattcgcggtgcacgcacacacaatcttaaaaatata
gatctggatattccccgtcatcaactggttgtcattaccggtttgtccggtagtggtaaa
tcctcgctggcttttgatactttgtatgcagaaggacaacgacgctacgtagaaagtctg
tcggcttatgctcgccagtttttgcaaatgatggaaaaaccggatgttgatttaattgaa
ggtttgtcaccagctatttccattgagcagaaagcaaccagtcataatccgcgctctacc
gtaggaacagtcactgaaattcatgactatttgcgcttattgtatgcacgtgtcggcaca
ccttattgtcctgaacataacctgcctttatccagtcagactgtttcccagatggttgac
catatactgaacctgcctgaagaaagccgggtaatgattctggctccggcagtgcgcggt
cgcaaaggtgaatttcttgaatactttgctgatttacaagtacagggttttgcacgggtt
cgcgttgatggtgaggtatatgcgattgaagaagtaccaaaactgcaaaaaaacatcaag
catgatatagatgtggttattgaccgggtaaaagtacgcgcggatatcaaacagcgtttg
gctgaaagttttgaaactgcactacgtctgggtaatgagcgtgctctggccatcgaaatg
gatagtggtaaagaacactggttttcagcacgctttgcctgtccggtatgttcgtatagt
ctgcaggaactcgaaccacgtcttttcagctttaacaaccctgtcggagcctgtcccagt
tgtgacggactcggcagcatggattattttgatcctgagcgagtagtaatgcatccggat
ttatcgctggccgcaggagcaatcaagggctgggataaacgtaatactttctatttccag
atgattcagtcactcggacatcattttaaatttgacgttaatacgccatttaatgaatta
aaggaagaaatccggaatattattctttatggttccggtaaagagcagattgaatttacc
tatctgtctgaacggggcacaaaatttacccgcagtcatccgtttgaaggtattctgccc
aatctcgaaaggcgctaccgcgaaacagattccgctaccgtacgcgaagaattagcccag
tatcaaagtcatcgagcctgtccggcctgcggcggtgcccgtttgagaacagaagcccga
tatgtctatataggcggaaaatcattaccggatgtcaatgcatggccgttaacagccaca
ctggattttttccagaatctgaatctggaaggtaataaaaaacagattgctgaaaaaatt
cttaaagaaattaatgagcgccttggttttctgattaatgtcggcctgaattacctgagt
ctggcacgcagtgctgaaaccttatctggtggtgaagctcagcgtatccggctggccagc
cagattggttccggcctgacaggtgtcatgtatgtactggatgaaccatctatcggcctg
catcagcgcgataatgaccgcctcctcgatacactgaaacatctgcgcgatctgggtaat
agcgtaattgtcgttgagcatgatgaagatgctatccgtgccgccgattttgttgtcgat
atgggacctggtgccggtgagcatggcggacaagttattatcgcagcttcacctgaaaag
gtggcagcatgcaaagaatccataacaggacaatatctgagcggagaaaaagccattagc
atgccggaacagcgcagtccggttgataaagagcgcttactgatattaagcggcgccagt
ggcaataatcttaaaaatgtaacccttaccttacctctcggcttgattacctgtattacc
ggcgtttccggcagcggcaaatcaactttgattaacgacacactggcaaaaattactaca
cgtgaattaaatcgtgctagtgaagagcctgctccttatgaagatatcaaaggactggag
catctggataaagttattaatgttgatcagtctcccataggaaggactccgcgttctaat
cctgccacgtataccggcctgtttacacctatccgtgaactgtttgccggggtaccactg
tctcgcgaacgcggatatacagttggccgattctcttttaatgtaaaaggcggacgctgt
gaagcctgtcagggtgatggggttattaaagtagaaatgcattttcttcccgacatttat
gtaccctgcgaggtttgtcatggtaaacgctataatcgtgaaacactagaaatacaatac
aaaggcaaaaatatcagtgaaattctggaaatgaccgtggaagaagcctgcacatttttc
gatgctgtgccgacagttaagcgaaaattgcagacattactggacgtaggactgggttat
gtgcgattaggacagtctgcaaccacactttccggcggtgaagctcaacgggtaaaactg
gcgctggaactctccaaacgcgataccgggcggacactttatatacttgatgaaccaacc
accggcttacattttgccgatatagctctgttactggacgttattcatcgcctgaaaggg
aaaggtaatagtattgttattatcgaacataatctggatgtgattaaaactgctgattat
attgttgatctgggtccggaaggtggtgatgggggcggtacgattattgcagaaggaact
ccggaagaagttgcagccaatcctaaaagctataccggaaaataccttaagccaatgctt
ggcaaatga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (49)   

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