KEGG   Sandaracinus amylolyticus: DB32_004339
Entry
DB32_004339       CDS       T03935                                 
Name
(GenBank) Excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
samy  Sandaracinus amylolyticus
Pathway
samy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:samy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DB32_004339
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:samy03400]
    DB32_004339
DNA repair and recombination proteins [BR:samy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DB32_004339
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      DB32_004339
SSDB
Motif
Pfam: ABC_tran UvrA_inter AAA_21 SMC_N AAA_29 nSTAND1 AAA_16 UvrA_DNA-bind RsgA_GTPase AAA_23 AAA_25 AAA_22 AAA_33 NACHT nSTAND3 ATPase DnaJ_CXXCXGXG DUF4350 Cytidylate_kin NTPase_1 cobW Viral_helicase1
Other DBs
NCBI-ProteinID: AKF07190
UniProt: A0A0F6W4L6
Position
complement(4999816..5005269)
AA seq 1817 aa
MRSTRLRGARTHNLRAIDLDLEPGTLVAIAGPSGAGKSSLAFGTLYAEGQRRYVESFSAY
ARQFLERLARPPVDRLEPVAAGIAVDRQAPVRTSRSTVGTMTEVADYAKSLWARAAQLHC
RQCGERVTRDEPEAIADALLASHAGAKLLVTYPVPVRDAEGFLGVREMLAGAGYRRVLID
GAVRDLDEVRPSDVLGDDVIAATPKKKVAKKKATKKKAAAPEPEPALRTVEVVADRTVLR
DEERGRIVEALEAAMTRGHGRAAAVIGSEVHRYSRALHCARCDIAYRDATPGLFSFNSAV
GACESCRGFGRVIGVDWAKVLPDPKKTLGGGAIAPWGGKSTAWERRALAKHAAAAGVPLD
VPIAQLSEAQRHWLMEGDALGWPRGWFGLRGWFGWLESRAYKMHVRVLLSRYRSYEDCTA
CNGARLKPDALLWKIDGRSIAELFAMPASDARVFLDRVEPVIETDAATLLLLRECRDRLR
TLEDVGLGYLQLDRASRTLSGGESQRVSLTSALSASLTGAMFVLDEPTVGLHPSDVRKLS
RVVERLAEDDNLVLVVEHDPDVIRAADRVIELGPGAGEHGGGIVFDGTPDVLAKGDTATA
HALREDARVVRERRITPSWLVLRGARGHNLQHVELRIPIGAMTCVTGPSGSGKSSLVLET
LVPAVQRALGVPGVHQPLDHDALEGAALVSSVVHVDQSPLGRTSRGNAATYLGAWDVIRK
RFAREPLAKERGYTDGFFSFNVEGGRCETCRGDGAETVEMQFLADVTFSCPDCSGRRFVG
PVLDVVHRGMTVADVLELTANEAAERFAGDASVCERLRPIIDVGLGYLKLGQSLNTLSGG
EAQRLKLALALAETPPGALVVLDEPTAGLHAKDVEPLMQVLDRLVARGDTVVIVEHDMRV
AARADRVIDLGPGAGNEGGRVVAAGTPEEVAAVEGSRTAEFLARALGRGEVETPTSTRTS
RSTSTGSDARVIEVVNAHEHNLRNVSVRFPREKLVAVTGPSGSGKSTLAFDVVFAEGQRR
YLETLSPYARQYLPQLPRPAVDRVVGVPPTVSVEQRITRGGANSTVATVTEVAHYLRLLW
ARAGLLHCTECEVPIAARAPGLLTEDVLARFGTKAEITVLAPVVRGRKGHHRELLGQMRD
KGFTEARIDGVVRKLEPGLSLARFVEHDVDVVVDRARGDRAKLEAALRRAAELGEGSVRV
LAAGEDLLLSTKRACPSCGKGYPELDPRFFSFNTRQGQCEGCEGKGFHLRTIGKGKTLRE
VREACEDCGGTRLSKLARSVTIDDRPITALLSQSVEAARRELSRMTLKGREKEIGEPCLH
ESEARLRFLEEVGLGYLGLDRPADTLSGGETQRVRLAAQLGSGLTGLLYVLDEPTIGLHP
RDTGKLVGALRALVDKGNSVIVVEHDTDVIRAAEHVVDVGPGGGKRGGRVLAEGAPAVLE
TVRESITGASIARAAHIPSERRDCAKAPRLELEGARGHNLKSVDVSIPLGRLVVVTGVSG
SGKSTLVRRVLLPAVRDGLGLVNDEPGLPFAKLRGHDALQRATMVDQSPIGRTPRSVPAT
YVGVWDEIRRLLAQTPEARARGWDASRFSFNVSHGGRCPTCDGNGSLTVEMAFLPDVYLP
CDGCRGMRFTQETLDARLHDRSAGELLKMEIEEAAKVLSAVPKVARPLELLTELGLGYLE
LGQASNTLSGGEAQRLKLVAELGTAAQGKTLYVLDEPTTGLHRDDVGRLIGVLGKFVERG
DTVVVIEHHPDVILQADWVIDLGPEGGQGGGTIVVQGTPEEVAACERSHTGRALRDEYAR
AGIELGAKKKPPKRKAS
NT seq 5454 nt   +upstreamnt  +downstreamnt
atgcgctcgacacgtctccgcggcgctcgcacccacaacctgcgcgcgatcgatctcgac
ctcgagcccggcacgctggtcgccatcgcgggcccgtccggcgcgggcaagtcgtcgctc
gcgttcggcacgctctacgccgagggccagcgccgctacgtcgagagcttcagcgcgtac
gcgcgacagttcctcgagcggctcgcgcgcccgccggtggatcgcctcgagccggtcgct
gcgggcatcgccgtcgatcgccaggcgccggtgcgcaccagccgctcgaccgtcggcacg
atgaccgaggtcgccgactacgcgaagagcctctgggcgcgcgccgcgcagctccactgc
cgacagtgcggcgagcgcgtcacgcgcgacgagcccgaagcgatcgcggacgcgctgctc
gcgtcgcacgcgggtgcgaagctgctcgtgacgtacccggtgccggtgcgcgacgccgag
ggcttcctcggcgtgcgcgagatgctcgcgggcgcgggctatcgtcgcgtgctcatcgac
ggcgcggtgcgcgacctcgacgaggtgcgcccgagcgacgtgctcggcgacgacgtgatc
gcggccacgccgaagaagaaggtcgcgaagaagaaggcgaccaagaagaaggccgccgcg
cccgagccggagcccgcgctgcgcaccgtggaggtcgtcgcggatcgcacggtgctgcgc
gacgaggagcgcgggcgcatcgtcgaggcgctcgaggccgcgatgacgcgcggtcatggt
cgcgccgcggcggtgatcgggagcgaggtgcaccgctactcgcgcgcgctgcactgcgcg
cgctgcgacatcgcgtaccgcgacgcgacccccgggctcttctcgttcaacagcgcggtc
ggcgcgtgcgagtcgtgccgcggcttcggccgcgtgatcggcgtcgactgggcgaaggtg
ctgccggatcccaagaagacgctcggcggcggcgccatcgccccgtggggcggcaagtcg
acggcgtgggagcgacgcgccctcgcgaagcacgcggccgcggccggcgtgcccctcgac
gtgccgatcgcgcagctctccgaagcacagcgccactggctcatggagggcgacgcgctc
ggctggccgcgcggctggttcggcctgcgcggctggttcggatggctcgagtcgcgcgcg
tacaagatgcacgtgcgcgtgctgctctcgcgctatcgcagctacgaggactgcaccgcg
tgcaacggcgcgcgcctgaagcccgacgcgctgctctggaagatcgacgggcgctcgatc
gcagagctcttcgcgatgcccgcgtcggacgcgcgcgtgttcctcgatcgcgtcgagccc
gtgatcgagaccgacgctgcgacgctcctgctgctgcgcgagtgccgcgatcgactgcgc
acgctcgaggacgtcgggctcgggtacctccagctcgatcgcgcgtcgcgcacgctcagc
ggcggcgagtcgcagcgcgtgtcgctgacgagcgcgctctcggcgtcgctcaccggcgcg
atgttcgtgctcgacgagcccacggtcgggctgcatccgagcgacgtccgcaagctctcg
cgcgtcgtcgagcggctggcggaggacgacaacctcgtgctcgtggtcgagcacgatccc
gacgtgatccgcgcggcggatcgcgtcatcgagctcggtcccggcgccggtgagcacggc
ggcggcatcgtgttcgacggaacgcccgacgtgctcgcgaagggcgacaccgcgaccgcg
cacgcgctccgcgaggacgcgcgtgtggtgcgcgagcgacggatcacgccgagctggctc
gtgctgcgcggcgcgcgcggtcacaacctccagcacgtcgagctgcgcatcccgatcggc
gcgatgacgtgcgtcaccgggccgagcggatccggcaagagcagcctcgtgctcgagacg
ctcgtgcccgcggtgcagcgcgcgctcggtgtgcccggtgtgcaccagccgctcgaccac
gacgcgctcgagggcgcggcgctggtgtcgagcgtcgtgcacgtcgatcagtcgccgctc
ggtcgcacgtcgcgcggcaacgcggcgacgtacctcggcgcgtgggacgtgatccggaag
cgcttcgcgcgcgagccgctcgcgaaggagcgcggctacaccgacgggttcttctcgttc
aacgtcgagggcgggcgctgcgagacgtgtcgcggcgacggcgccgagaccgtcgagatg
cagttcctcgcggacgtgacgttctcgtgccccgactgcagcgggcggcgcttcgtgggc
ccggtgctcgacgtcgtgcatcgcggcatgaccgtcgcggacgtgctcgagctcaccgcg
aacgaagcggcggagcgcttcgcgggcgatgcgtcggtgtgcgagcggctgcgtccgatc
atcgacgtcgggctcggatatctgaagctcggtcagtcgctcaacacgctgagcgggggc
gaggcgcagcgcttgaagctcgcgctcgcgctcgcggagacgccgcccggcgcgctcgtg
gtgctcgacgagccgaccgcgggcctgcacgcgaaggacgtcgagccgctgatgcaggtg
ctcgatcgtctcgtcgcgcgcggcgacacggtcgtgatcgtcgagcacgacatgcgcgtc
gcggcgcgcgccgatcgtgtgatcgacctgggacccggcgcgggcaacgagggcggtcgt
gtcgtcgcggcgggcacgcccgaggaggtcgcggccgtcgagggatcgcgcaccgcggag
ttcctcgcgcgcgcgctcgggcgcggcgaggtggagacgccgacgagcacgcgcacgagc
aggagcacgagcacgggctcggacgcgcgcgtcatcgaggtggtgaacgcgcacgagcac
aacctgcgcaacgtctcggtgcgcttcccgcgtgagaagctcgtcgcggtcaccgggccg
agcggctcgggcaagtcgacgctcgcgttcgacgtggtgttcgctgaggggcagcgacgg
tatctcgagacgctctcgccctacgcgcgccagtatctgccgcagctgccgcggcccgcg
gtcgatcgcgtcgtcggcgtgccgccgacggtctcggtcgagcagcgcatcacgcgcggc
ggcgcgaactcgacggtcgcgacggtcaccgaggtcgcgcactacctgcgcctgctctgg
gcgcgcgccggtctgctccactgcaccgagtgcgaggtgccgatcgcggcgcgcgcgccc
gggctgctcaccgaggacgtgctcgcgcgcttcggcacgaaggccgagatcaccgtcctc
gcgcccgtcgtgcgcggccgcaagggccatcaccgcgagctgctcggccagatgcgcgac
aagggcttcaccgaggcgcgcatcgacggagtcgtgcgcaagctcgagcccggtctctcg
ctcgcacgcttcgtcgagcacgacgtcgacgtcgtcgtcgatcgcgctcgcggcgatcgc
gcgaagctcgaggccgcgctgcgtcgcgcggccgagctcggcgaagggagcgtgcgcgtg
ctcgccgcgggcgaggacctcctgctctcgacgaagcgcgcgtgtccgagctgcggcaag
ggctaccccgagctcgacccgcgcttcttctcgttcaacacgcgccagggccagtgcgag
ggctgcgagggcaagggcttccacctccgcaccatcggcaagggcaagacgctccgcgag
gtgcgcgaggcgtgcgaggactgcggcggcacgcgcctctcgaagctcgcgcgctcggtc
acgatcgacgatcgaccgatcaccgcgctgctctcgcagagcgtcgaagcggcgcgccgc
gagctctccaggatgacgctgaagggccgcgagaaggagatcggcgagccctgtctccac
gagtccgaggcgcgcctccgcttcctcgaggaagtcggcctcggctacctcggactggat
cgcccggcggacacgctgagcggcggcgagacccagcgcgtccgcctcgcggcgcagctc
ggcagcgggctcaccgggctcctctacgtgctcgacgagccgacgatcggcctccatccg
cgcgacaccggcaagctcgtcggcgcgctgcgcgcgctcgtcgacaagggcaacagcgtg
atcgtcgtcgagcacgacaccgacgtgatccgcgccgccgagcacgtcgtcgacgtcggt
cccggcggcggcaagcgcggcgggcgcgtgctcgcggagggcgcgcccgcggtgctcgag
acggtgcgcgagtcgatcaccggcgcgtcgatcgcgcgcgccgcgcacatcccgagcgag
cgccgtgattgtgcgaaggcaccgcggctcgagctcgagggcgcgcgcggacacaacctg
aagagcgtcgacgtttcgatcccgctcggtcggctcgtcgtcgtcaccggcgtgagcggc
tcgggcaagagcacgctcgtgcggcgcgtgctgctgcccgcggtgcgcgacgggctcggc
ctcgtcaacgacgagccggggctgcccttcgcgaagctgcgcggccacgacgcgctccag
cgcgcgacgatggtcgatcagagcccgatcggccgcaccccgcgctcggtgcccgcgacc
tacgtcggcgtgtgggacgagatccgtcgcctgctcgcgcagacgcccgaggcgcgcgcg
cgcggatgggacgcgtcgcgcttctcgttcaacgtctcgcacggcggtcggtgcccgacg
tgcgacggcaacggctcgctcaccgtcgagatggcgttcctgcccgacgtgtacctgccg
tgcgacggatgtcgcggcatgcgcttcacccaggagacgctcgacgcgcggctccacgat
cgcagcgccggcgagctgctcaagatggagatcgaagaggcggcgaaggtgctctccgcg
gtgccgaaggtcgcgcgaccgctcgagctgctcaccgagctcggcctcggctacctcgag
ctcggtcaggcgtcgaacacgctgagcggcggcgaggcgcagcgcctgaagctggtcgcg
gagctcggcaccgcggcgcagggcaagacgctctacgtgctcgacgagcccaccacgggc
ctgcatcgcgacgacgtcggtcggctgatcggcgtgctcggcaagttcgtcgagcgcggc
gacaccgtggtcgtgatcgagcaccaccccgacgtgatcctccaggccgactgggtgatc
gatctcggccccgaaggagggcagggcggcggcacgatcgtcgtgcagggcacgcccgaa
gaggtcgctgcgtgcgagcgcagccacaccggccgcgcgctgcgcgacgagtacgcgcgc
gccggcatcgagctcggcgcgaagaagaagcccccgaagcgcaaggcgagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (22)   
   Pfam (22)   
All databases (74)   

Download RDF
DBGET integrated database retrieval system