KEGG   Salmo salar (Atlantic salmon): 106567252
Entry
106567252         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(I) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106567252
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106567252
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106567252
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_3 Laminin_G_2
Other DBs
NCBI-GeneID: 106567252
NCBI-ProteinID: XP_013991798
UniProt: A0A1S3LLE2
Position
ssa01:complement(132595451..132705666)
AA seq 1783 aa
MSLDAQRCPVLQVGQYSTLALPLAELFTDGFADEFSLLVQLRSPQRDERSVLTLLSHDSH
ILLQLRISAYTLTFISTQQRHYEFPVSGLSDGQWHHVAVSVSSVRLALYVDCALVESVDW
VYQGMGITPEGLLLLGGIIEGFETPFEGQFRQLTFLMGDTDAGHHHCTLHPAQCGGAGFK
SPRSPRTNHALEKLLLSSNDLVDLLERSKDSSFLDVQVGKTDVFGQSGSRRGDGTWGPRQ
KGSVGRGDVFVVDEDTDLADPNLQGGHLNPQWKPSRQGPKGSHEGKPEPSSKLLEENITT
NKKTKDSGGRGVGLFPAKPLDDIIIDLDPGSSPKKPSVEFPHVVKTQIETPLDQEHPDSN
LLREEVERPQTPSQTAFAPTSEPPAPPVEAVTEERRPTTHIPTQPDPDPDRAITVERGPE
RPRTVTIVHREGDLVLGSDGQMYRLQRGPPGRMGPPGKEGFPGHAGLRGFKGDRGQLGPE
GRAGRQGDPGPPGPPGLPSFYLWKNTIEEWAAFRQTSFYHLLYAGWPREQGLPGPAGEMG
KTGPQGPTGDPGQQGPPGVIGEMGEPGPKGVAGRAGLHGKHGENGLDGQPGMPGDPGRQG
PFGYRGEGGSKGEKGDEGLIGAKGPRGHVGEPGEKGSIGLPGCPGYVGSPGPQGVRGATG
SEGNPGPDGEAGFDGPPGPPGTVGATGFTGRVGAQGVNGSQGELGPVGVIGPRGPQGPQG
LDGESGPPGLRGIQGQPGMSGALGPKGDPGPMGTMGIRGEPGFEGPMGPLGTQGPKGFPG
ITGKRGPDGDKGDPGPKGERCVQGASGIQGPQGESGPSGFPGFTGLKGQPGTKGIGGENG
ETGPQGKLGRDGLKGNRGPDGRNGQPGHRGTKGRIGQRGHDGQPGSPGLPGPPGTEGPEG
KPGTQGLSGSVGITGDKGLKGFQGIAGEPGPDGRSGPLGPPGRTGPTGIPGPLGERGFTG
KEGVEGPQGPVGMYGFLGSMGMRGTNGHIGHRGETGVRGLPGLTGKLGPPGVSGPPGDRG
PPGPQGRLGDLGPTGLEGPQGPSGLQGSDGATGNPGPRGSRGPPGPQGFNGPAGILGMTG
AGGIIGPAGERGEMGMLGPSGDLGPPGLDGEQGTPGQSGLEGQTGMKGEKGDLGPCGKLG
PPGQPGARGLQGLKGLQGSPGPMGKEGDVGPLGDAGGAGSKGEKGDVGPLGPTGREGPWG
TLGENGEKGPKGEKGHIGLMSQSGFMGEIGPAGLSGLQGIMGPRGPPGPDGPQGEKGESG
PSGAIGTQGKTGPPGVAGVQGVRGDTGKPGPQGPVGKVGPEGDLGHKGKPGLDGEKGEPG
GPGEPGEQGVDGLPGIRGPPAVLGLEGPQGEVGAQGPEGPLGALGVRGSPGPEGKQGLKG
EKGDDGRDGSPGKTGHIGRSGKRGKAGIRGTRGERGPKGERGNVGLIGVPGWVGSIGIPG
LRGDRGDQGEKGSEGEKGNIGPLGPSGRDGLKGSLGPVGVPGQAGPKGDQGNIGPSGPRG
TPGMPGLPGLFGEKGLKGFEGFPGQPGTRGLPGAPGLPGLPGPSVNMTLTQLKDLKYLSD
KPNYPLIQTLLDSLHQDLRLLVDPPDGSKEHPATTCMELWLCHPDYASGMYYIDPNQGSP
NDALLVYCNFSGTATQTCLHPRDAQMTMKAWLKDSETNGSFQWLSKQEQGFQFYYPGENV
VQMRFLRLQSWKAVQRIIYSCHPGHRLGHTDREVKFLADTRKQSFLGALKDCMPGEEVDS
LEPRESVFEFEDLNLLPVRDVAVFGGGNVTHEFGFTIGPICFS
NT seq 5352 nt   +upstreamnt  +downstreamnt
atgtctctggatgctcagaggtgtccggtgctgcaggtgggacagtactccaccctggcc
ctgcccctagcagaactcttcactgacgggtttgcagatgaattcagtctgttggtgcag
ttgcgaagcccacagcgagacgaacgcagcgtgctcaccctgctcagccatgacagccac
atcctgctgcaactacgcatcagcgcatacacactcaccttcatcagcacacaacagcgc
cactacgagttcccggtcagtggtctgtctgatggccagtggcaccacgtagctgtgagt
gtgtcatctgttaggctggcgctgtatgtggactgtgccttggtggagagtgtggactgg
gtgtaccagggtatgggcatcacccctgaaggcctactattgttgggagggatcatagag
ggcttcgaaacaccctttgagggccaattccgacagctgacgttcctgatgggcgacaca
gatgccggccaccatcactgcactcttcaccctgcccagtgtgggggggctgggttcaag
tccccccgctccccacgtaccaaccacgccctggagaagctcctgctgtcctcaaatgat
ctggtggacctcctagagagatccaaggattcctcattcttggatgtgcaagtggggaag
actgatgtgtttgggcagagtgggagtcggcgtggagatgggacatggggtccccgccag
aaaggctcggtgggacgaggggacgtctttgtggtggacgaggacacagacctggctgat
ccaaacctccaggggggacacctcaaccctcagtggaaacccagcaggcagggccccaaa
ggcagccacgagggcaagcctgagccctcctccaaactcttggaggagaacatcaccacg
aacaagaagacgaaagactctggagggaggggcgtcggcctgtttcccgcaaaacccttg
gatgacatcattattgatttggaccctgggtcttccccgaagaagccctcagtggagttt
ccccatgtcgttaagactcagatagagaccccccttgaccaggagcacccagactctaac
ctgctgagagaggaggtggagcggcctcagaccccttctcagactgccttcgcccccacc
tcagagccccctgccccccctgtggaggctgtaactgaggagaggagacccaccacacac
atccccacccagcctgacccagaccctgaccgggctatcactgtggaacgaggaccagaa
cgcccacgcacagtgaccatcgtacacagggaaggggatctggttctgggctctgatggc
cagatgtataggctccagagagggcccccaggccgaatggggcccccaggaaaggagggc
tttcccggtcacgctggcttacgtgggtttaaaggtgacaggggccagctggggcctgag
gggcgtgcagggcgacagggggatccaggcccccccggcccacctggtctgccgtccttc
tacctgtggaagaacactattgaggagtgggctgcttttcggcaaacctctttctaccat
ttactctatgctggctggcctagggagcagggtctcccaggaccagctggggagatggga
aagacaggcccacaggggccaacaggggatcctggccaacaagggcctccaggagtaatt
ggagaaatgggtgagccgggcccaaagggcgtagcgggcagggcagggctccatgggaaa
catggagagaatgggctggatggtcagcctgggatgccgggtgaccctgggcgacaggga
cccttcgggtataggggagaaggcggttccaaaggagaaaaaggagacgagggccttatt
ggagccaagggtccaagaggacatgttggagaaccgggcgagaagggctctattggttta
ccaggctgtcccggttatgttggttcaccagggcctcagggagtcagaggggccacaggc
tccgagggaaaccctggacctgatggggaggctgggtttgatgggcctccagggcctcct
gggacagtgggagccactggtttcacaggccgtgttggcgctcagggagttaacggctca
cagggagagttgggccctgttggagtcatcggccccagaggcccccagggaccccagggt
ttagatggcgagagtgggcctccaggactcaggggaatccagggacagcctgggatgagt
ggtgcccttggtccgaaaggtgatcctgggcctatggggacaatgggtatccggggtgag
ccagggttcgaggggcccatggggccactgggaacacaaggtccaaagggtttccctggt
attactggtaagagaggaccagacggggacaaaggggaccctggaccgaagggagagaga
tgtgttcagggtgcttcgggcatccaagggcctcagggagagagtggtcctagtggcttc
cctggatttacagggctcaaaggtcaacctggcactaaaggcattgggggggagaatgga
gaaactggccctcagggaaaactgggcagagatgggctgaaggggaataggggaccagat
gggcgcaacggccagcctggacacagagggaccaagggtcgtatcggacagagagggcat
gatggccagcctgggtcaccgggtttgccaggcccacctgggacagagggaccagaagga
aagcctggtacacagggtctctctggttcagtgggaataactggcgataaaggcctaaag
ggattccagggcattgctggagagccaggtccagatggccgatcaggccctctgggccca
cctggacggacaggaccaacaggtatccctgggccattgggagagaggggcttcactggg
aaggaaggtgtggagggaccccaggggccagtaggcatgtatggtttcctgggtagcatg
ggaatgcgtggcacaaatggtcacatcggacataggggggagactggtgtaagaggcctg
cctggtcttactgggaagcttggacctccaggtgtatcaggacctcctggagatagaggc
cctccaggtcctcagggtcggctaggggatctgggacccacagggctagagggcccacag
ggcccctcgggtctgcagggctcagatggagccacagggaacccgggaccaaggggaagc
agggggcctccggggccacaaggctttaacggaccagcaggaatcctaggaatgacaggt
gctggtggaataattggaccagcgggggaaagaggagaaatgggtatgctgggaccttct
ggtgatctaggtcctcctggactggatggcgaacagggcactcctggccaatcggggtta
gaggggcaaacaggaatgaaaggggaaaagggagacctagggccttgtgggaaacttggt
cctccaggacagcctggagctcgaggtctacaagggctcaaagggttgcaaggctctcct
ggaccaatgggaaaagagggtgatgttggacctcttggcgatgctggtggtgcaggttcc
aaaggggagaagggtgatgtggggcctctggggcccacagggcgggagggtccatggggg
accttgggggaaaatggggagaagggaccaaaaggagagaagggccacatcggacttatg
agtcagtcaggattcatgggagaaataggacctgcaggcttatcagggctacagggtatt
atgggccctagggggcctccagggccagatggacctcaaggagagaagggggagtctggg
cctagcggagccataggaactcaaggcaaaacaggacctccgggggtggctggagttcaa
ggagtcagaggtgacacagggaagccaggaccacagggtccagtagggaaggttgggcct
gagggagacttgggccataaaggtaagccaggactagatggagagaaaggggagccaggg
ggaccaggcgagccaggagaacagggggttgacggtctgccaggcatcagagggccccca
gcggttcttggtttggaggggccacagggtgaggtgggagcccagggtccagaaggtccc
ctaggggcattgggtgtcaggggaagcccaggacctgagggaaaacagggactgaaagga
gagaagggagatgacggcagagatggatcacctggaaagacaggtcacatcggaaggagt
gggaaaagaggcaaggctggaatcaggggcacaagaggagagagaggaccaaagggagag
aggggaaatgtgggattgattggtgttcctggatgggtggggtctataggaatcccaggc
ttgcgaggagacaggggggatcagggtgaaaaagggagtgagggagaaaaggggaacata
gggccgcttggtccgtcagggcgtgatggcctaaagggtagtctgggtcctgttggggtg
ccaggacaggcgggcccaaagggagatcaggggaatattggaccatctgggccaagagga
acacctgggatgccaggactacctggtttgtttggagagaagggtttgaaaggctttgag
ggatttcctgggcaacctgggacaaggggcctgccgggggcacctggactcccaggactt
ccaggtccctcagtaaacatgacccttactcaactcaaggaccttaagtacctgtcagat
aagcccaactaccccctgatccagaccctgctggactctctgcaccaggacctgaggctg
ctggtggacccccctgatggcagcaaggagcaccctgccaccacctgcatggagctgtgg
ctctgccaccccgactacgccagcgggatgtattacattgaccccaaccagggcagcccc
aacgatgctctcctagtctactgcaacttctctggcacagccacacagacctgccttcac
ccccgagacgcccagatgaccatgaaggcctggctaaaggattcagagacaaacggctcg
ttccaatggctcagcaagcaggaacaaggattccagttctattacccaggggaaaatgtg
gttcagatgcgtttcctgaggttgcagagttggaaagccgtgcaaaggatcatctactca
tgccacccgggacacaggctgggccacacagacagagaggtcaagttcctggcagacaca
aggaagcagagtttcttgggagcacttaaagactgcatgcctggagaagaggtggattct
ctggagccgcgggagtctgtgtttgagtttgaggacctcaacctgcttcctgtgagagat
gtggctgtcttcggcggtggaaacgtcacacatgaatttggcttcaccatcgggcccatc
tgtttcagctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (70)   

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