KEGG   Salmo salar (Atlantic salmon): 106571944
Entry
106571944         CDS       T04363                                 
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106571944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sasa03041]
    106571944
Enzymes [BR:sasa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     106571944
Spliceosome [BR:sasa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    106571944
 Complex C
   U5 SnRNP specific factors
    106571944
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19
Other DBs
NCBI-GeneID: 106571944
NCBI-ProteinID: XP_014001011
UniProt: A0A1S3MDK3
Position
ssa15:61915048..61925743
AA seq 815 aa
MMAGDPTDKNNAAETSGVKDKDRERKRSRSRERERKGSPSKDRKPRQRSRERNRSKSAER
DRRLKDKEREKEHDRDKNRERGRKDRDKDGHRRDKDCSKKSRSVSPKSKDRIKREKDLKK
EEDEEDEKKKKSKVQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQQTEERK
KTIDEDRKKRRMFQDIGRKMMEDPQERDRRERRERMERENNGDQADDGRQKIREEKDKGK
ELQAIKERYLGGTKKRRRTRHLNDRKFVFEWDASEDTSTDYNPIYKEKHQVQLYGRGFIA
GIDLKQQKKDQSHFYVDMMETRRTLEEKEQEEVRLKKVHKKEAKQRWDDRHWSQKKLEEM
ADRDWRIFREDYSITTKGGKIPHPIRNWKEYNLPPHIVEVIDNCGYKDPTPIQRQAIPIG
LQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKDERIEDSDQGPYAVILAPTRELAQQIE
EETLKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLGRCTY
VVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDEAEDPEKMKMNFEMGKHKYRQTVMF
TATMPAAVERLARNYLRRPAVVYIGSAGKPHERVEQKVLLMGEGEKRKRLLDVLARGFEP
PIIIFVNQKKGVDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAG
RGIDIHDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVALTFLTKEDSSVFYDLKQAFLE
SPVSTCPPELSNHPDAQHKPGTILTKKRREETIFA
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgatggctggtgatccaaccgacaagaacaatgcagcagagacctcaggagtcaaggat
aaggatcgggagcggaaacgcagtcgctcacgagagcgtgaacgcaaaggctccccgtcc
aaggaccggaaacctcgccagcgctctcgtgaacgcaaccgatccaaatccgcagaaaga
gatcgccgtctgaaggacaaggagagagaaaaggagcacgaccgggacaagaacagagag
aggggtcgcaaggaccgagacaaggacggtcaccgcagagacaaagactgcagcaagaaa
tccagaagcgtctcccccaagtccaaggacaggataaagagggagaaggatttgaagaaa
gaggaggatgaggaagatgagaaaaagaagaaaagcaaggtccagccactgtctctagag
gaacttctagccaagaagaaagcagaggaggaggcggaggcaaagcccaagttcctgtcc
aaggcggagcgcgaggcggaggctctgaaaaggaggcagcagcagactgaggagaggaag
aagactatcgatgaggacaggaagaagaggaggatgttccaggacatcgggaggaagatg
atggaggacccccaggagagggacagacgagaacggagagagcggatggagcgagagaac
aacggggaccaagcggacgatggaagacagaagatcagagaggagaaggataagggcaag
gagctccaggccatcaaggagcgttacctgggcgggaccaagaagcgccggcggacacgt
cacctgaacgacaggaagtttgtctttgagtgggacgcctctgaagacacgtctaccgac
tacaaccccatttataaggagaagcaccaggtccagctgtatggccggggcttcatcgct
gggatcgacctcaagcaacagaagaaagaccagtcccatttctacgtggacatgatggag
acgagacgcacactggaggaaaaggagcaggaggaggtgcgactgaagaaggttcataag
aaggaggccaagcagcgttgggatgacagacactggtcgcagaagaagctggaggagatg
gcggacagggactggcgtatcttcagggaggattacagtatcaccaccaagggtggcaaa
atcccccaccccatccggaactggaaggagtacaacctgcccccacacatcgtggaggtc
atcgacaactgtggctacaaggatccaacgcctatccagagacaagccatccccattggc
ttacagaaccgcgacatcatcggcgtggctgagacgggtagcggtaaaacggctgccttc
ctcatccccctgttggtctggatcacgaccctgcctaaggatgaaaggattgaggactcg
gaccagggtccgtatgcagtgatcctggcccccacccgtgagctggcgcagcagattgag
gaggagacccttaagtttgggaaacctctgggcatccggaccgtggctgtcatcggaggt
atctccagggaggaccagggcttccgcctccggatgggctgcgagatagtgatagccacc
ccgggtcgtctgatagacgtgttggagaacagatacctggtcctgggccgctgtacttac
gtggtactggatgaggctgaccgcatgatagacatgggcttcgagcctgacgtgcagaag
atcctggagtacatccccgtgaccaatcagaaaccagacacggacgaggcagaggacccc
gagaaaatgaagatgaacttcgagatgggaaaacacaagtacagacagacggtcatgttc
acagctaccatgcccgcggcggtagagcggttggcccgtaactacctgcgtcgtccggcc
gtggtgtacatcggttcagctggtaaaccccacgagagagtggaacagaaggttctgctc
atgggagagggagagaagaggaagaggctgctggatgttttggcacgcgggttcgagccg
cccatcattatcttcgtcaaccagaagaagggtgtcgacgtgctggccaagtctctggag
aagatggggtacaatgcttgcacgttgcacggtggcaagggccaggagcagagagagttt
gctctgtccaacctgaaggctggagccaaggacatcctggtggccaccgacgtggctggg
agaggtatcgacatccacgacgtctccatggtgctcaactacgacatggccaagaacatc
gaggactacatccatcgtatcggtcgtacgggtcgcgctgggaagagcggcgtggcgctg
accttcctcaccaaggaggactcgtcagtgttctacgacctgaagcaggccttcctggag
agccccgtgtccacctgcccccccgagctgtccaaccaccccgacgcccagcacaagcct
ggtaccatcctcaccaagaagagacgcgaggagaccatcttcgcctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (42)   

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