KEGG   Salmo salar (Atlantic salmon): 106575722
Entry
106575722         CDS       T04363                                 
Name
(RefSeq) collagen alpha-2(V) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106575722
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106575722
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106575722
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 106575722
NCBI-ProteinID: XP_014007856
UniProt: A0A1S3MYM8
Position
ssa17:complement(23903993..23966366)
AA seq 1626 aa
MATSVLSRIILCLAISLVLVLTVTSQDVKLGHEDSCAENGKVYSNNEIWNPEPCKICVCD
LGTITCEDVRCEDLDCKETSTPEGECCPVCSEASGTQGQQVTTWDNLLPKIKTEEKKDET
CRDNGQVYAHNDMWTPEPCRVCVCDSGTTICEEVQCEMVGNCEKVTIPEGECCPVCDSFS
SANRRIEMMAFKGQKGEPGDIPYVVGPVGQPGPMGPPGAQGNRGYTGFKGRKGSQGPAGI
DGEPGVPGNPGEPGSPGQPSHPGGQLVSQMAAGFGEKSAGMMGMISGNRGEAGPRGPPGP
SGQPGPTGGQGAPGDIGDPGSMGGFGYRGPEGPPGKPGPDGEPGPTGIAGDKGAAGSAGP
RGFPGLPGHPGLKGLKGHAGLLGARGQSGAAGSKGPSGTPGGMGPPGPAGPAGMQGERGR
SGPTGPVGKRGESGHIGKAGPQGPMGITGALGFPGSPGIKGQPGPPGARGTGGQQGPRGE
AGRVGLAGAMGIQGPTGTEGAAGAKGPSGAPGIQGLTGLLGPVGPPGPQGTTGLPGPKGQ
LGDLGIPGFKGEAGFKGESGAPGDHGALGPMGEEGRRGERGDAGTSGAAGPNGERGAPGS
RGFPGQDGLPGQKGAQGERGLGGSSGAKGADGDPGRTGEPGLPGARGLSGLLGSQGPEGH
QGPMGAQGERGLGGSSGAKGADGDPGRTGEPGLPGARGLSGLLGSQGPEGHQGPMGGGGE
DGGPGPAGSAGTRGPAGTMGVVGPKGFTGDPGKTGEVGTPGVAGQRGVNGKAGEMGAGGT
AGPAGVAGKRGEQGPPGMNGFQGLPGSAGPPGESGKPGAEGIAGEGGAAGLTGPRGERGI
PGERGDVGTNGLPGPKGISGGPGPEGPKGGSGTKGTVGDIGAAGLQGMPGKRGVPGSPGP
KGDVGSVGEKGTEGTAGNDGPRGLPGPVGPTGGIGLNGDKGEAGPKGPPGRRGARAVAGA
SGEPGPTGAVGFPGSPGPDGQPGVKGEPGERGQKGEAGAQGLQGTAGKLGSQGPAGVTGL
KGARGTQGAAGGSGFPGFPGGVGPAGSVGEVGAPGDIGTPGKAGTPGLRGENGGPGRVGE
RGAPGPAGAPGDKGEPGEDGPGGPDGPAGPAGISGQRGVVGIPGVRGESGMVGPPGTAGA
PGKSGAPGSRGGKGAVGAVGLPGATGPGGDPGLTGNAGSDGVHGKDGLIGARGDRGNPGP
EGLAGTPGLHGSVGPVGTSGVPGKRGDHGARGPPGPQGQSGIRGTLGPQGPQGDRGAKGD
QGERGQKGHRGFTGLQGLPGTTGESGDVGAGGIVGPTGQRGPPGVVGPAGGDGQIGLTGP
MGSPGSRGTSGDIGPQGPPGDAGPPGPPGTPGPPTAGADMFGFSSSFDYDFGEDQDGPPP
PPEFNGDESAPPQPPPESNWDDSGPHPPPEFNEDEARPNNASTVLGADQGIQTTLKSLSG
NLQNMKCPDGSQANPAKTCQDIKQCHPLKKTGDYWLDPNQGSTKDVIKVFCNMETGETCI
SAHPISASIPRKTWWTKSTPTASKPVWFGANMNGGTKFSYGNKEELPNAVTIQIRLIRLL
SKEGVQNVTYHCKNSVAVNDGATGNLKKALILKGSNGQEVKVQGNSRLRYTVLEDGCSVS
LIDQSS
NT seq 4881 nt   +upstreamnt  +downstreamnt
atggccacctctgtgctctccaggattattctatgtctggctatatctctggttttggta
ttgacagtgaccagccaggatgtcaagctagggcacgaagacagctgtgccgaaaacggc
aaagtctacagcaacaacgagatttggaacccggagccatgtaagatctgtgtgtgtgac
ctggggactattacctgtgaggatgtccgatgtgaagacctagactgtaaggaaaccagc
acccctgagggagaatgttgccctgtgtgttctgaggcctcaggtacccagggccagcag
gttaccacctgggataatctgttaccaaagatcaaaacagaggagaagaaggatgagacc
tgcagggacaacgggcaggtgtacgcccacaacgacatgtggaccccagagccgtgcagg
gtgtgtgtgtgtgacagtggaaccaccatctgtgaggaggtgcagtgtgagatggtgggg
aactgtgagaaggtgaccatccctgagggagagtgctgccctgtgtgtgacagcttctcc
agcgctaacaggaggatagaaatgatggcgttcaagggtcagaaaggcgaacctggtgat
atcccttatgtcgtggggccagtaggtcaacctggaccaatgggtcctcccggagctcag
gggaacagaggatacactggtttcaagggcagaaaaggttcacagggcccagctggcatc
gacggggaaccaggagtcccagggaaccctggtgagccaggatcccccggccagccctca
caccctgggggtcagctggtctctcaaatggctgcaggcttcggtgagaaatcagctggg
atgatgggaatgatatctggcaacaggggtgaggcaggaccaagagggcctcctggaccg
tctggtcaaccaggccctacagggggacagggggccccaggagacattggagacccagga
tccatgggtggctttggttacagaggacctgagggcccaccagggaaaccaggaccagat
ggagaacctggcccaaccggaatagccggagataaaggagccgctggatctgccggtccc
agaggtttcccaggactgccaggtcaccctggactgaaaggccttaagggtcatgcaggt
cttctaggagcgagaggccaatctggtgctgctgggtcaaagggcccatcaggtactcct
ggtggaatggggccccctggtcctgcgggtccagcaggaatgcaaggggagagaggaagg
agtggcccaactggacctgtggggaaacgtggtgaatctggacatattgggaaagcagga
ccacagggtcctatggggatcactggagctctaggattcccaggtagtccaggtataaag
gggcaaccagggcccccaggagcacgagggacagggggccagcaaggaccaagaggggag
gccggacgcgtgggattggctggagctatgggaattcagggtccaacaggaacagaggga
gctgccggagccaaaggaccatccggagctccaggtatccagggtctgactggactgctt
ggccccgtggggccccccggaccacagggaaccactggactgcccgggcctaagggccaa
ctgggtgatttaggcattcccggattcaaaggagaggctggattcaaaggagaatctggt
gcacctggtgatcatggagcgctgggtcccatgggagaggaggggaggaggggagaacgg
ggtgacgccgggacttcaggtgccgctggacccaatggagagagaggtgctcctggcagt
agaggttttcctggtcaggatgggttacctggtcaaaagggtgcccaaggtgagcgagga
ctgggtgggtcatctggtgccaaaggtgccgatggtgacccaggacgcactggagagcca
ggtcttccaggggcacggggtctgtcgggtcttctcggctcccagggtcctgagggacac
caaggaccaatgggtgcccaaggtgagcgaggactgggtgggtcatctggtgccaaaggt
gccgatggtgacccaggacgcactggagagccaggtcttccaggggcacggggtctgtcg
ggtcttctcggctcccagggtcctgagggacaccaaggaccaatgggaggaggaggagag
gatgggggaccaggtccagcagggtcagctggtaccagaggtccagctggaaccatgggt
gtagttggaccaaaaggctttactggagaccctggtaagacaggagaagtggggacccca
ggtgttgcaggacagaggggggttaatgggaaagctggagagatgggcgctggtggcact
gctggtccagcaggagttgcagggaagagaggcgagcaaggacctcctggtatgaatggc
tttcagggtctacctggatctgctggtccacctggagagtctgggaaaccaggtgctgag
ggtatcgctggagagggaggggctgctggtctcacagggccaaggggtgagcgtggcatc
ccaggagagagaggtgatgtgggaactaacggactaccggggcccaaaggtatttcaggg
gggccaggaccagagggaccaaagggtgggtctggaactaaaggaaccgttggggacata
ggagctgcaggcctgcaggggatgccagggaagaggggtgtccctggttctcctggtcct
aaaggagatgtgggttcagttggtgagaaaggaaccgagggtactgctggaaacgacggg
cccaggggacttcctggtccagttggaccaacaggaggcattgggctcaatggtgataag
ggagaggccggccctaaaggcccccctggacgtcggggagcgagagcagtggccggagct
tctggggagcctggtccaaccggtgcagtaggattccctgggtctcctggtcccgatggg
caacctggggtcaaaggtgaaccaggagagaggggtcagaagggtgaggctggagcacag
ggactccaaggaacagctggtaaacttggttcccagggtcctgctggtgtgactggacta
aagggggccagaggaacacaaggggccgcgggtgggtctggtttcccaggattccctggg
ggagttggtccagcaggctccgttggtgaggtaggggcgcctggagacattggtacccca
gggaaggcaggtactcctggacttagaggcgagaatggaggccctgggcgtgtaggagag
agaggggccccgggcccagcaggtgccccaggagacaagggagagcctggagaggatgga
ccagggggccctgatgggccggcgggaccagcaggcatctcaggacagcgaggtgttgtg
ggcatacctggagtcagaggagagagcgggatggttgggccccccggtactgctggtgca
cccggaaaatcaggtgcccccggaagtcggggaggcaagggcgctgtcggtgcagtcggg
ttaccaggggcaaccggaccaggaggggaccctggtcttacgggtaatgctgggtctgat
ggggtacatggcaaggatggacttataggagccaggggagatagagggaatcctggtcct
gagggtcttgctggaactccggggcttcatggctctgttggtccagtcgggacctctggt
gtccctgggaagagaggagaccatggtgctagagggcctccaggaccccagggacaatca
gggatccgggggacgctggggcctcaagggccacagggagacaggggagccaaaggagac
caaggagagagagggcagaaaggccacagaggcttcactggattgcaaggcttacctggg
acaactggagaatctggggatgttggagctggaggaattgtaggacctactggacagaga
gggccccctggtgtggttggccccgcaggaggggatggacaaattgggctgaccgggccc
atgggctcccctggatcaagaggaaccagtggagacatcggacctcaggggcctcctggg
gatgctggtccccctggtcccccagggacccctggccctcccactgctggggctgatatg
ttcggcttcagcagctccttcgactacgacttcggcgaggaccaggatggaccacctcca
cccccagagtttaacggggatgaatcagccccccctcaaccccctccagagtccaactgg
gacgactccggcccccatccccctccagagttcaacgaggatgaggcgcgtccaaataat
gcctcgaccgtcctcggggcagaccagggcatccagaccacgctgaagagcctcagtgga
aacctgcagaacatgaagtgccccgatggcagccaggccaaccccgccaaaacctgccag
gacatcaagcagtgccacccccttaaaaagaccggagactattggctggaccccaaccag
ggaagtaccaaggatgttatcaaggtgttctgcaacatggagactggtgagacctgcatc
tcagcccaccccatctcagccagcatccctcgcaaaacatggtggaccaaatccactccc
actgccagcaaacctgtctggtttggagcaaatatgaatggaggaactaaatttagctac
ggcaacaaggaggagctgcccaacgccgtaaccattcagattaggctgatccgcctgctt
tctaaggagggtgtccagaatgtcacctaccactgcaagaacagcgtggccgtgaatgac
ggagccacaggcaacctgaagaaggctctgatcctcaagggctccaacggacaggaggtc
aaggttcagggcaactcccgcctcagatacactgtcctggaggatggctgctccgtaagc
ctcattgaccagagctcgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (86)   
   KEGG ORTHOLOGY (1)   
   RefGene (82)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (102)   

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