KEGG   Salmo salar (Atlantic salmon): 106580672
Entry
106580672         CDS       T04363                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RNF169-like
  KO
K20805  E3 ubiquitin-protein ligase RNF169 [EC:2.3.2.31]
Organism
sasa  Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sasa04121]
    106580672
   03400 DNA repair and recombination proteins [BR:sasa03400]
    106580672
Enzymes [BR:sasa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.31  RBR-type E3 ubiquitin transferase
     106580672
Ubiquitin system [BR:sasa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   RBR proteins
    106580672
DNA repair and recombination proteins [BR:sasa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   Other DSBR factors
    Ubiquitin ligases
     106580672
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 Prok-RING_4 zf-RING_2 zf-RING_UBOX zf-RING_4 zf-RING_10 LAG1-DNAbind zf-RING_5 zf-RING_6
Other DBs
NCBI-GeneID: 106580672
NCBI-ProteinID: XP_014017455
UniProt: A0A1S3NQE0
Position
ssa20:complement(43307409..43320381)
AA seq 660 aa
MKMAATGSARSTSGLGHKCKARPADMLNTRTHSQLLTLEEARCPVCSEILLEPVTMPCSH
SVCLHCFKRTVEFTSLCCPLCRLRVSSWARKQSREKSLVNIELWEMVRQSYPQRCEMRME
QRDCETGGEDIFRSPAQVSKSGEIRLEYGKQKVKVPINEEKEEGRRKVHHREGCGTLKHF
QDPFYGLLSDSENEEPIGKRTRNVSAFVRRTKISAGLHTNVVQRSQSCTDPEEGRRKMRV
STHLPGLDKASIAHSYNAGILLSSENSRSLSAPIIVQDKRHSWRGVIMASSTPFMVPQSK
QERSISPESNDSISEELNHFKPIVCSPCTPPKRLPDGRVMEPTIVKSTPRNLFRSLERPT
SYEASPTILQKWKQIEVDRQSVKVTSKGTLTNPMNEDLVFKPSPVEEKDGKPCSCAPAAN
KGKEHMVMCAKTDSSGQENERTCIHNKRRLIFDQAIGETAFHQKQFTKFHTPFVALTSEE
TVKECGVSFESVVVPESHCGPTSIYQNPTLVPHDINASVRSCKLKSKDSQDQRKEFDNRN
CAQNQPTSRRGKKRSQKTKHLEETESGLKRSRSQSQDGFNIECAQAELYIQQVQQEREDR
ELALNLQRQFDREQQQEDKQKTSPDKYFLRSCMSSENRIKCNPRRSGRISKKNEHFNCYY
NT seq 1983 nt   +upstreamnt  +downstreamnt
atgaaaatggcggcgacagggtccgccagatccaccagtggattggggcacaaatgcaaa
gccaggcccgccgatatgctgaacactcggacacattcacagctgttgaccttggaggag
gcaaggtgtccggtttgttcggaaattttattagagcccgtaactatgccatgtagccac
tcggtgtgtctgcactgtttcaagcggacagttgaattcaccagtctgtgctgtcccctc
tgccggctgcgagtatccagctgggcccgtaaacaatcccgggagaaaagcctagttaac
atcgaactctgggaaatggttcgacagagttacccacaacgatgcgagatgagaatggag
cagagagactgtgagactggtggagaagacattttccgctcgcctgctcaggtatccaaa
tctggagagatccgactggagtatggaaagcagaaagtaaaggtaccaatcaatgaagag
aaagaagaggggaggaggaaagtccaccacagagagggatgtggaactctcaagcacttt
caagatcctttctatgggttgctgtcagactcggagaatgaagaacccattgggaagaga
accagaaatgtgtctgcgtttgttagaagaacaaagatctcagctggtctacataccaat
gtggtgcagagaagccagagctgtactgatccagaagagggaaggcgaaaaatgagggta
tctactcatcttcctggactggacaaggcaagtattgctcacagctacaatgcaggaatc
cttctgtcctctgagaacagccgatctctttcggcacccatcattgtccaagacaagagg
catagctggcgaggcgtcatcatggcatcatcaacaccttttatggtcccccagtcgaaa
caggagaggtccattagccctgagagcaatgacagtatttctgaggagctgaatcacttc
aagccaatagtgtgctcaccgtgcaccccaccaaagcgactacctgacgggcgagtgatg
gaacccacaattgtgaagtccaccccccggaacttattccgcagcctggagaggcccacc
agttatgaagccagccctactatcctccagaaatggaagcagatagaggtggaccgtcag
tctgtcaaagtgacctcgaagggcaccttgaccaaccccatgaacgaggaccttgtcttc
aaaccaagccccgtagaggagaaggacggcaagccctgtagctgtgctccagcagcaaat
aagggaaaagaacacatggttatgtgtgccaagacggattcctctgggcaagagaatgaa
agaacttgtatacataataaacgaagactgatatttgatcaggccattggagagacggcc
ttccatcaaaaacaattcacaaagtttcatactccatttgtagccttaaccagtgaggag
actgtaaaagaatgtggggtttcttttgagtctgtggtggtacctgaatcacattgtgga
ccaacttcaatttatcaaaatccaaccttagtaccacacgatataaatgccagtgttagg
agttgcaaacttaaatcaaaagactcacaggatcagagaaaagagtttgacaatagaaac
tgtgcccagaaccaacctacctcaaggaggggcaagaagaggagccagaagaccaaacac
ctggaagagacagagtctggactcaagaggtcaagatcccagagccaagatggtttcaat
atagagtgtgcgcaggctgaactgtacattcaacaggtacagcaagagagagaggacaga
gagctagctttgaatcttcaaagacagtttgacagagaacagcaacaagaagacaagcaa
aagaccagtcctgacaagtactttctccggtcctgcatgtccagtgaaaacagaatcaaa
tgcaatccacgcagatcaggaagaatttccaaaaagaatgagcactttaattgctattat
taa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (12)   
All databases (48)   

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