KEGG   Salmo salar (Atlantic salmon): 106613908
Entry
106613908         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(I) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106613908
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106613908
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106613908
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 106613908
NCBI-ProteinID: XP_014072147
UniProt: A0A1S3T6D0
Position
ssa10:complement(25630491..25659133)
AA seq 1943 aa
MQGPAVILLLLSYGTIQQMTFIMGDPTAARQHCQDYNSTCIPHTDKQEKVILAGEKVLGR
VASRATFREESHGSRLRDQTAEQDTAQNTNLSAQSLPSVRAQSEPETQRKTRITPEADKL
KLTQKIGWLNETSTLQDDTAAKITRNSTIVKYVGLDTGTVAESPLSAPDWPSESDRSSEP
ISSSKIKEPHGPGGVTNRTVYSQTSGSLHQPNQTNTARDVSVMKGVVVPSQTVETAILSP
TAWSENPTEPALLFQESDSDGESIGSGRNTSVRLDDLQIPPEPKQGFGPTRQTWSLEPTI
KPNLLEFKKIDVEELLRQAVIPLPPLLPPKNSTVTGRKTVPEAPLPPVLSPTPQNTTDIT
STSTGDKASKRQSGRKTVTKTLTDSGQVMEKGDKVLSQEPPTEDLETDTETKTEFESAEE
MDTETEMEEVDEDNDKESETEETDVGDSKLAHDITQVNTRQFKNSGGAVKTDVLTELMSP
EPRGSERELPPTPLPPASVPGKVHSMCPLTQYPHSMHPSDSLWPEFYFCFLRDTEQRGQK
VVAMTAGARPQPLTQGLSLKAQRMLYESRMNTLSVPVVSANHQPRHALKERGTAYRPGLR
VQQGLQGPPGLTGPPGPKGDKGYAGGMGRTGRTGYRGPIGPPGMPAIVVFKSSEEEWETF
KKKTFYKKLVATWPRLKGPPGPLGPPGDAGPPGPPGITGKQGRKGDGGKIGGPGPPGMPG
PPGRTGSDGIDGINSDDGPAGPPGEQGLQGYRGEKGSKGELGEWGYEGEPGPQGNRGRKG
DKGNKGNRGLIGITGYIGIPGTRGQLGYPGTSGPPGDIGGIGFVGSPGPPGKMGPRGPKG
VPGVNGPPGQPGERGLRGPLRPQGEPGPDGIVGFPGVRGPQGKTGADGPTGPKGDPGDAG
DEGNIGESGLSGLHGANGKPGKTGPSGDPGIKASKRSDKGDPGFKGDQGRPGPPGKRGFK
GRGGASGQLGNVGPMGPPGFPGTTGYDGIIGENGKQGKDGQKGDRGLSGGPGIVGPRGDK
GREGRVGFAGLPGPFGEMGKSGERGAEGEPGIKGRTGIPGVIGLKGLKGLQGYLGGRGLD
GTHGPPGPIGGTASDGDTGSTGLRGMVGKTGAPGIQGPVGKSGDSSGRGITGKPGKPGVR
GAKGKEGPNGLLGNPGLKGNRGQEGSKGKRGSPGVQGLTGIQGYRGAPGIAGNIGPWGEV
GHQGPPGDKGPPGSVGPRGVVGYPGKDGPQGGIGPVADKGDKGSRGAIGQKGVAGVDGEE
GPTGLWGPMGPPGLKGLPGEKGKMGAQGERGGKGIQGDRGNQGQQGPKGPLGKEGYLGPS
GDRGKEGASGLKGQPGIRGPTGLAGRYGPGGNTGRGRAKGEKGLPGTTGPPGRFGPTGLV
GPKGPTGLPGKRGVDGKSGLGGLKGEYGERGKTGTGGVKGDVGLQGPRGKKGESGAGGKM
GTLGKRGFTGSPGGKGRPGPAGATGEKGVKGIEGPKGLHGSPGKRGGRGVRGEPGEEGPL
GPDGPVGRSGKPASIPIGLAGLDGLLGVEGNEGDNGDIGYRGTPGRPGLPGKMGQSGQPG
LSGGQGAPGSKGNLGSKGKRGPAGPMGPRGIPGFGGAKGKFGQHGSKGQVGGRGLQGHIG
PRGIKGNPGLPGNKGRLGPKGIQGDIGPRGPPGKNGFPGLPGLFGNRGMKGIQGMPGVKG
LKGARGQPGKPGPPGRPRNRRPGALGKRRGSKKQTRAMTRRTLTLLPDQNPSSSISWPQG
TKDSPATTCHELGLIRPHLQDGHFYMDPNQGCPFDAVQVFCNFTAGGMTCIPPVQSQIIG
KWEPEKNMSKKYIQWFSQLDGGYKSEYAGLDVVQLRFLRLHSHSASQHLSIACPFNHNSR
EIRKNATNRVLHFLGDSGGEIGSSYMTVSRNGCEVEVEVRVRGSTEIHRGDMELLPLRDV
SMEGRGDHWDTELRAVLGPLCFL
NT seq 5832 nt   +upstreamnt  +downstreamnt
atgcagggccctgccgtgattctgctgctactcagctatggcacaatacaacagatgacc
ttcataatgggtgatcctacagcagccagacagcactgtcaagactacaactccacctgc
atccctcacacagacaaacaggagaaagtgattttagctggtgagaaggtgcttggtcga
gttgcgagcagggcaacattcagagaagagtctcatggatccaggctgagagatcagact
gcagagcaggacacagcccaaaatactaacctatcagcacagtcattgccatcagtaaga
gctcagtcagagccagagacacagagaaagacaaggataacacctgaagcagacaagtta
aagctcacacagaagataggatggctgaatgaaacttccacactgcaggatgatacagca
gcaaagatcactagaaatagtactatagtcaaatatgtagggcttgatactggcacagta
gcagagtcccccctttctgctcctgactggccgtctgagagtgacagatccagtgaaccc
atttcatctagcaaaataaaggagccacacggtccaggaggcgtcacaaacagaacagta
tattcacaaacctctggatctcttcatcagccaaaccaaaccaatacagccagagatgtc
tctgtgatgaaaggtgtagtagtaccatctcagacagtggagacagccattctcagtccc
actgcatggtcagaaaaccccactgaaccagccctgctgttccaggagtcagacagtgat
ggagaatcaataggctcagggagaaatacatcagtgaggttagatgatttacagatccca
cctgaacccaaacagggctttgggcctacaagacaaacatggtccttagaacccaccata
aaacccaaccttttggaattcaagaaaatagatgtggaggagctactgaggcaggctgtg
attcctctgcctccactgctacctccaaagaatagcactgtcacagggagaaagactgtc
ccagaggctcctctgcctccagtgctatctccaacacctcaaaataccactgatatcact
tccacatcaacaggtgacaaagcttcaaagagacaaagtggccgaaagactgtgacaaag
actttgacagattctggacaagtcatggagaagggggataaagttttatcccaggagcca
cccacagaggatctagagacagacacagaaacaaagacagagttcgagtcagcagaagag
atggacacagaaacagaaatggaagaagttgatgaggacaatgataaggaatcagagaca
gaggaaacagatgtaggcgacagcaagttggcacacgacatcactcaagtcaacacaagg
cagtttaaaaatagtgggggagccgtcaaaactgatgttctaactgagctcatgtccccg
gagccgagaggatcagagcgggaactgccgcctacccctctacctcctgccagtgtgcca
ggtaaagtacacagcatgtgtcctttgacacagtaccctcacagcatgcacccctcagac
tctctgtggcccgagttttacttctgtttcctcagagacactgagcagagaggtcaaaag
gtcgtcgccatgacagcaggggcaaggcctcaacctctgacacagggtctgtctctgaaa
gctcagaggatgctgtacgagtccaggatgaacaccctgtccgttcctgtcgtttcagcc
aatcaccaaccaagacatgcactcaaagagcgagggacagcctatagaccgggtcttcga
gtgcaacagggacttcagggcccacctggtttgacagggccacctggaccaaaaggggat
aaaggctacgctggtgggatgggccggactggacgcacaggttaccgaggcccgattggt
ccaccagggatgcccgccatcgtagtgttcaagagctctgaggaagagtgggagaccttc
aagaaaaagacattctacaaaaagcttgttgcaacttggccgagattgaagggccctcca
gggcctcttggcccccctggggatgctggacctcctggacccccgggaattactggaaaa
caaggacgaaaaggagatggagggaaaatcggtggtcctggaccaccagggatgcccggg
cctccaggaagaactgggagtgatgggattgatggtataaattctgatgatggccctgca
ggaccacctggggaacagggtctccagggttacagaggagagaagggcagcaaaggggag
ctgggtgagtggggttatgaaggggaaccaggaccccagggaaacagaggacggaaagga
gacaaggggaataaaggaaaccgagggctcatagggatcactggatacataggaatacct
ggaaccagaggacaactgggctacccgggaacatctggacctcctggagacatcggtggc
attggttttgttggatcgccaggccctcctggcaaaatggggccaagagggccaaagggg
gtaccaggagtcaatggaccaccaggccaaccaggtgagcgaggcctaaggggaccactc
aggcctcagggagagccaggtcctgatgggattgttggattccctggcgttcgtggacct
cagggaaaaacaggtgcagatgggcctacaggtccgaaaggggatcccggggacgcaggt
gatgaggggaatataggagaatcaggactctctgggcttcacggagccaatggcaaacca
ggaaaaactggaccctcaggtgacccagggatcaaagcatctaagagaagtgacaagggt
gacccaggatttaaaggggaccagggtcgacccgggcctccaggtaaaagaggcttcaaa
ggcagaggaggagcatcggggcagctaggtaatgttggaccaatggggccccctggattt
cctggaaccacaggttatgatggaatcattggggagaatgggaagcagggaaaagatggg
caaaagggtgacagaggtcttagtggtgggccaggcattgttggaccaagaggcgataag
gggcgagaaggtcgagtaggatttgccggtttgccagggccttttggagagatggggaag
tcaggagagagaggagctgaaggagaacccggtattaaggggaggactggaattccagga
gtcattggactgaaagggctgaagggacttcaaggctatctaggaggtaggggactggat
ggaacacatggacccccgggacccatcggaggaactgcatctgacggggatactggatct
actggactaaggggaatggtggggaagactggggcaccagggattcaaggtccagttggg
aagagtggggattctagtggtagagggatcactggtaagccaggaaagccaggagtcagg
ggtgccaaaggtaaagagggtccgaacggccttctgggaaatcctggcctgaagggaaac
agaggtcaagaaggttcgaaggggaaacgcggaagtccaggcgtgcagggattgacaggg
atacagggatacagaggagctcctggcatagcaggcaatataggaccatggggtgaggtg
ggccaccaagggccaccaggggacaagggtcccccaggatcagttgggccccgtggagtt
gtaggttacccaggtaaagatggaccacaaggaggcattgggccagtggcagacaaaggg
gataaggggtccagaggagctatcggacagaagggagttgctggtgtcgatggtgaggag
ggcccaactggattgtgggggccaatggggccaccaggactgaaggggttaccgggtgag
aaggggaagatgggcgctcagggggaaagaggtggaaaagggatccagggagacagaggc
aaccaaggtcaacaaggaccaaagggcccactggggaaagaaggatacttagggccatca
ggggacagagggaaagaaggagcttcaggactaaagggccagccgggcatcagaggccct
acaggtctcgctgggcgctacggaccagggggcaacaccggaagaggccgggccaaagga
gagaaggggctccccggaaccacagggcctcctggaaggtttgggccaacaggcttagtt
ggaccaaaaggaccaactggtttaccaggaaaaagaggagtcgatggaaaaagtggactt
ggtggacttaagggagagtatggggagaggggaaagactgggactggcggtgtcaaagga
gacgtgggattgcaaggtccaagggggaagaaaggagagtctggagcaggaggcaaaatg
gggacattgggaaagagggggttcaccgggtctccaggaggtaaaggcagacctgggcct
gctggtgccactggagagaaaggtgttaaaggaatagaagggccaaagggattgcatggc
agcccaggaaagaggggaggcaggggagttagaggcgaaccaggagaagaaggccctttg
ggaccggatggaccagttggaagatctggaaagccagcaagtatccctataggacttgct
ggtttggatggattgctgggggttgaaggaaatgaaggagataatggtgatattggttac
agaggaacccctgggaggcctggtctaccagggaagatgggtcaaagtggacaacctgga
ttgagtggtggtcaaggagcaccagggtcaaagggtaatcttggatcaaaaggaaaacga
ggacctgcagggccaatggggccaaggggtattccagggtttggaggagcaaaggggaag
tttggccagcatggatcaaagggtcaggttggcggcagaggcctgcagggacatattgga
ccgcgtggaatcaaagggaatccaggactgccggggaataaagggcggctaggtccaaaa
ggcatacagggagacattggtcctcgtggtccacctgggaaaaatggcttccctggtcta
cctggtctctttggaaataggggaatgaaggggatacaaggaatgcctggagttaaggga
ctgaaaggtgcgcgtggacaaccaggaaaaccaggtcctcctggccgtccaagaaacagg
cgacctggagcccttggtaaaagaagaggatccaaaaaacaaactcgggccatgaccagg
agaacgcttaccttactgcctgaccagaacccaagcagctccatcagctggcctcagggc
accaaagacagccctgcaaccacctgccatgagctggggctgattcgcccacacctgcag
gatggacacttctacatggaccctaaccagggctgcccatttgatgccgtgcaagtcttc
tgtaacttcaccgcaggagggatgacctgtatacctcctgtccagtcacagataatagga
aaatgggaacccgaaaaaaacatgtcaaaaaagtatatccagtggtttagccagcttgat
ggtggctataagtctgagtatgctggtcttgatgtggtccagctccgatttctacggtta
cacagccattctgcctctcagcacctgtccatcgcctgcccgtttaaccacaatagtaga
gaaatcaggaaaaatgcaacaaacagggttcttcactttctgggagactctggtggggag
attggttcaagctatatgacagtatcgaggaatggttgtgaagtggaggtggaggtacga
gtgaggggaagcacagagatccacagaggggacatggagctgctgcccctcagggatgtt
agtatggagggaaggggagaccactgggacacagaactcagagctgtcctgggacctttg
tgctttttgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (75)   
   KEGG ORTHOLOGY (1)   
   RefGene (71)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (9)   
   UniProt (1)   
   RefSeq(pep) (8)   
DNA sequence (11)   
   RefSeq(nuc) (9)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (101)   

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