KEGG   Streptomyces scabiei: SCAB_25321
Entry
SCAB_25321        CDS       T01187                                 
Symbol
truB
Name
(GenBank) putative tRNA pseudouridine synthase
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
scb  Streptomyces scabiei
Brite
KEGG Orthology (KO) [BR:scb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:scb03016]
    SCAB_25321 (truB)
Enzymes [BR:scb01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     SCAB_25321 (truB)
Transfer RNA biogenesis [BR:scb03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    SCAB_25321 (truB)
 Prokaryotic type
    SCAB_25321 (truB)
SSDB
Motif
Pfam: TruB_N TruB_C TruB_C_2 PseudoU_synth_2 DKCLD TruB-C_2
Other DBs
NCBI-ProteinID: CBG69639
UniProt: C9Z247
Position
complement(2882203..2883117)
AA seq 304 aa
MTQQRQKNTTPDGLVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVE
KATKLLGHLALTEKEYLGTVRLGQTTLTDDAEGEITASVDASKVTRDAVDAGVAELTGRI
MQVPSKVSAIKIDGVRSYKRARDGEDFEIPARPVTISSFAVYDVREAVAEDGTPVLDLVV
SVVCSSGTYIRALARDLGAGLGVGGHLTALRRTRVGPYKLDSARTLDQLQQELTVMPVAE
AADAAFPRWDVDDKRARLLLNGVRLEMPEEYAERGAVAVFDPAGRFLALVESQKGKARSL
AVFG
NT seq 915 nt   +upstreamnt  +downstreamnt
atgacccagcagcgccagaagaacaccacgcccgacggccttgtcatcgtcgacaagccg
tcgggcttcacttcgcacgacgtcgtcgcgaagatgcgcggcatcgcccggacccgccgg
gtcgggcacgcggggacgctcgacccgatggccaccggagtgctcgtcctgggggtggag
aaggcgaccaagctgctcggtcacctcgcgctcaccgagaaggagtacctcgggaccgtc
cggctcgggcagaccacgctcaccgacgacgccgagggcgagatcacggcgtcggtcgac
gcgtcgaaggtcacccgggacgcggtcgacgccggtgtggccgaactgaccggccggatc
atgcaggtgccgtccaaggtcagcgccatcaagatcgacggcgtgcggtcgtacaagcgg
gcccgggacggcgaggacttcgagattcccgcccggcccgtcaccatctcctccttcgcc
gtgtacgacgtccgtgaggccgtcgccgaggacggcacccccgtcctcgacctggtggtg
tcggtggtgtgctcctccggcacgtacatccgcgccctcgcccgcgacctgggcgccgga
ctcggcgtcggcggccacctcaccgcgctgcgccggacccgtgtggggccgtacaagctg
gactccgcgcggaccctggaccagctccagcaggagctgaccgtgatgccggtggccgag
gccgccgacgccgcgttcccccgctgggacgtggacgacaagcgggcgcgcctgctgttg
aacggggtgcgcctggagatgcccgaggagtacgccgagcgcggggccgtcgccgtcttc
gaccccgccggccgcttccttgccctggtggagagccagaagggcaaggccaggagcctg
gccgtcttcggctga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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