KEGG   Saccharomyces cerevisiae (budding yeast): YGR271W
Entry
YGR271W           CDS       T00005                                 
Symbol
SLH1, RQT2
Name
(RefSeq) putative RNA helicase
  KO
K18664  antiviral helicase SLH1 [EC:5.6.2.6]
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Brite
KEGG Orthology (KO) [BR:sce00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sce03019]
    YGR271W (SLH1)
Enzymes [BR:sce01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     YGR271W (SLH1)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     YGR271W (SLH1)
SSDB
Motif
Pfam: Sec63 DEAD SNRNP200_wHTH ResIII Helicase_C DEXQc_Suv3 AAA Helicase_PWI MotA_ExbB
Other DBs
NCBI-GeneID: 853187
NCBI-ProteinID: NP_011787
SGD: S000003503
UniProt: P53327
Structure
Position
VII:1031791..1037694
AA seq 1967 aa
MSTEYSADSSKSFMIAMQSMIDTSQTFNLDRSKISLPDFDDELKKVQKDEQNQRTELTVL
SQDRNDWDDIFEEFKDISFAQLQSIIDSYKTKNAVAVYKKIGKLINEAETTLSSNVLLET
VLQMVYKHQKQELEKELLDFLGTGNIDLVSLLLQHRRMIVATPIETTILLIKNAVNSTPE
FLTQQDIRNQVLKSAEDAKNRKLNPATKIIKYPHVFRKYEAGSTTAMAFAGQKFTLPVGT
TRMSYNTHEEIIIPAADQASNKNYLYTKLLKISDLDHFCKTVFPYETLNQIQSLVYPVAY
KTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAA
EIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSK
VKLLIIDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLGVN
RQIGMFYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYDKLSEMIQRGYQVMVFVH
SRKETVKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEIFQFGFGIHHA
GMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGIS
DVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEIS
LGSVTNVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHA
LQMIVFDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDG
IKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVA
QNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAFDHPLCQFDLPENIIRRIRDT
KPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPKINIEAEIFPITTNVMRIHIALGP
DFVWDSRIHGDAQFFWVFVEESDKSQILHFEKFILNRRQLNNQHEMDFMIPLSDPLPPQV
VVKVVSDTWIGCESTHAISFQHLIRPFNETLQTKLLKLRPLPTSALQNPLIESIYPFKYF
NPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRE
RVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDV
SLIIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKD
HGLYNFPSSVRPVPLKMYIDGFPDNLAFCPLMKTMNKPVFMAIKQHSPDKPALIFVASRR
QTRLTALDLIHLCGMEDNPRRFLNIDDEEELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQ
KDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQ
MMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGSIT
NKQEALDFLSWTFLFRRAHHNPTYYGIEDDTSTAGVSEHLSSLIDSTLENLRESQCVLLH
GDDIVATPFLSISSYYYISHLTIRQLLKQIHDHATFQEVLRWLSLAVEYNELPVRGGEII
MNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQ
SLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWYEDDPVSVLPGLQLRRIKDYTFSE
QGFIEMTPQQKKKKLLTLEEIGRFGYKKLLNVFDQLTFGMTESEDTKKRFVSVCQRLPVL
EGMKFEEQENNEVLTFYSKHLSSKHNNGFEVYCDKFPKIQKELWFLIGHKGDELLMIKRC
QPKQMNKEVIIHCDLFIPEEIRGEELQFSLINDALGLRYDMVHKLIS
NT seq 5904 nt   +upstreamnt  +downstreamnt
atgtcaactgaatactctgctgattcatctaaatcatttatgattgcaatgcaatctatg
attgatacttcacaaacctttaatctagatagatcgaaaatctctttaccagattttgat
gacgagctaaaaaaagtccaaaaggatgaacaaaatcaaagaactgaactaactgttctc
tcacaagatagaaatgattgggatgatatatttgaggagtttaaagacatttcatttgct
caactgcaatctataattgattcatacaaaacaaagaatgcagttgcagtatataaaaaa
attggaaaactaatcaatgaagctgaaacgacactaagcagcaatgtattattagaaact
gtactgcaaatggtttataaacatcaaaagcaagagttagagaaagaattgttggatttt
ttaggaacagggaatatagaccttgtttctctgttacttcagcatagaagaatgatcgtt
gctacacctatagaaacgacgattctgctaataaaaaatgcggtcaattcaacgccagag
ttcctgacacagcaagatatcaggaatcaagttttgaaaagtgcagaggatgccaagaat
aggaaattaaatcccgccactaaaataatcaagtacccacacgtcttcagaaaatatgaa
gcaggatccactacagctatggcctttgccggtcaaaaattcactttgccagtagggact
acaaggatgtcgtacaatacccatgaagaaattataattccggcagcagatcaggcatcc
aacaagaactatctctatacaaaactattgaaaataagtgatttggatcatttttgcaag
actgtatttccctatgaaactttaaaccaaatacaatcccttgtttaccccgtagcttat
aaaacaaatgaaaatatgctaatttgtgcacctactggtgcaggtaaaacagacattgca
ttactgacaataattaatacaataaaacaattctccgtggtcaacggggaaaatgaaatt
gatattcaatatgatgattttaaagttatttatgttgcccctttgaaagcactcgctgct
gaaatcgtcgacaagtttagtaagaaattggcgccttttaatatacaagtaagggagtta
acaggcgatatgcaattgacaaaggcggaaattttagccactcaagtaatagtcacaacc
cctgagaaatgggacgttgtcacccgtaaagcaaacggcgacaacgatttggtttcaaag
gtcaaattactaattattgatgaagttcatttactgcacgaagatagaggttcggttatt
gaaactttagttgcacgtaccttgagacaggtagaaagctctcaatcaatgattcgtatt
atcggtctatcagctacattacccaattttatggatgtagcagatttcttaggagtaaat
agacagatcggaatgttctattttgatcaatcattccgtccaaagcctctagagcagcaa
cttttgggctgtagaggtaaggcaggtagtagacaaagtaaagagaatatcgataaagtc
gcttacgacaaattgagtgaaatgattcaaagagggtaccaggtaatggtatttgtccac
tcaagaaaggaaactgttaaaagtgcaagaaactttatcaaactagcagaatctaaccac
gaagttgacctttttgcacctgaccctatcgaaaaggataaatattctagaagtttagtg
aagaacagagacaaggatatgaaggagatttttcaatttggttttggtatccatcatgct
ggtatggcccgttcagatagaaatcttactgaaaaaatgtttaaagacggtgctatcaag
gtactgtgttgtactgcaacattagcatggggtgttaatttacctgctgattgtgttatc
atcaagggtacacaagtatatgattctaaaaagggtggattcatagatctaggtatttca
gatgttattcagatttttggcaggggtggtaggccgggcttcggttccgcaaatggtacg
ggtattttatgtacttccaatgatcgtctggatcattatgtttccttaattactcaacaa
caccctatcgaatctagattcggttccaagttggttgataacctgaacgccgaaatttca
ttggggagcgtgacaaatgtagatgaagcaatcgaatggcttggttacacatacatgttt
gttcgtatgagaaaaaatccttttacttacggtattgattgggaggaaattgcaaatgac
ccgcaattatatgaacggaggagaaaaatgatcgtagtagctgcaaggcgattacatgct
ctccaaatgattgtgttcgatgaagtgtcaatgcatttcattgcaaaggatttgggcagg
gtgtcctctgatttttatcttttgaacgaatccgtcgagatattcaatcaaatgtgtgat
cccagagccaccgaagctgatgtattgtccatgatcagtatgagcagtgaatttgacggt
ataaaatttagagaagaagaatccaaggagttgaagagactttctgatgaatctgttgag
tgccagattggaagccaacttgacacccctcaaggtaaagcaaacgtgctattacaggct
tatatttcccagactagaatttttgactcagcactatcatccgattcgaattatgttgct
cagaactctgttagaatttgtagagcattgtttttaataggtgtcaatagaagatggggt
aaattttcaaacgtcatgctaaatatttgcaaatctattgaaaagaggctctgggccttt
gatcaccctctctgtcagtttgatttgcctgaaaatattatcagacgcatcagagatact
aaaccttccatggagcatcttttagaattagaggcagatgagctcggagagctggtgcat
aataagaaggccgggtctaggttatataaaatattgagccgatttccaaagattaatata
gaagctgagattttccccattacaacaaatgtaatgaggatacatattgcattaggtcca
gactttgtatgggattcccggatacatggtgatgcacagtttttttgggttttcgttgaa
gaatctgataagtcgcaaatccttcattttgaaaagttcatcttaaacagaaggcagttg
aataatcagcatgaaatggacttcatgatcccattgtcagaccctttgcctccgcaggtt
gtcgtaaaggttgtgtcggatacttggattggctgtgaatcgacccatgccatctctttt
caacatttaatcagaccatttaacgaaactttacagacaaaattgttgaagttacgtcct
ctacctacatcagccctccagaatcctttaattgagtcaatttatcctttcaagtatttc
aatcccatgcaaactatgacattttatacactttacaataccaatgagaatgcgtttgtt
ggctcgcctacaggttctggtaaaacgattgtggctgaattggctatatggcatgccttc
aaaacatttcctgggaaaaagattgtttatatcgcaccaatgaaagcattagtacgtgaa
agggttgatgactggagaaagaaaataacaccagtgaccggagataaagttgtagagtta
accggtgattctttgccagatcctaaagatgtgcatgatgccaccattgttattacaact
ccagaaaagtttgatggtatttcccgtaattggcaaactcgtaagtttgttcaagatgta
tctttaattatcatggatgaaattcatttgttggctagtgatcgtggtcctatcttagaa
atgattgttagtcgtatgaattatatttcctctcaaaccaagcaaccggtcagactgcta
ggtatgtcaactgctgtttcaaacgcctacgacatggctggctggttgggagttaaggac
cacggactgtataacttcccgtcaagcgtccgtccggttccattgaaaatgtacattgat
ggatttccagataatttggcattctgtcctctgatgaaaacaatgaacaaacctgtgttt
atggccattaaacaacattcacctgataaaccagcattaatatttgttgcatcgcgtaga
caaactagactaacggctttagacttgatccacttatgtggaatggaagataatccacgt
aggtttttgaatatagacgatgaggaggaactgcaatattacttatcacaggtcactgac
gacactttaaagttatcactccagttcggtattggattgcatcatgcaggtctagtgcaa
aaagatcgttctatttctcatcagttgtttcaaaaaaacaaaattcagattctgatcgct
acatcaaccctagcgtggggtgtcaatttgccagctcacttggttatcatcaaaggtaca
caattttttgatgcaaaaattgaaggatatagagatatggatttaacagatatcttgcaa
atgatggggagagctggtagaccggcttatgacactacaggtactgctatcgtttataca
aaagagtccaaaaaaatgttttataaacatttcctaaacgttggttttcctgtcgagtcc
tccttgcacaaggtattagatgatcatttaggtgcagaaataacgtcaggtagcataact
aataagcaagaagcgttagattttttgagttggacatttttgtttcgtagagcgcatcat
aacccgacatattatggcattgaagatgatacaagtacagcaggagtcagtgaacatttg
agttctttgatagatagcacattagaaaatctgcgagaatcacaatgtgttttattacat
ggagatgatattgttgctacgccattcttaagtatatcctcatactactatatttcacat
ttaacgatacgccaattattgaaacagatacatgatcatgcgacttttcaagaggtatta
cgatggttatcgttggctgttgagtataatgaattgcctgtaagaggtggtgaaattatc
atgaatgaagaaatgtcgcagcaatcgaggtactccgttgaaagcacttttaccgatgaa
ttcgaattaccgatgtgggatccacatgtaaaaacatttttattacttcaagctcattta
agccgtgtagatttaccgattgcagattatatccaggataccgtatcagttttggatcaa
tctctacgtattctacaggcttatattgatgtcgccagtgaattgggttactttcatacg
gtattgaccatgataaagatgatgcaatgcataaagcaagggtattggtatgaagacgat
cctgttagtgtacttccaggattacaactgagaagaatcaaagattacacttttagcgag
caggggttcattgaaatgacgccgcagcaaaagaagaaaaagctgttaaccttggaggaa
ataggaaggtttggatataagaaattattaaatgtttttgatcaactaacttttggaatg
acagaaagcgaagatacgaaaaaacgtttcgtcagtgtctgccaaagattaccggtttta
gaaggcatgaaatttgaagaacaggaaaataacgaggtgttaacattttatagcaagcac
ctttctagtaagcataataatgggtttgaagtatattgtgataaattccctaagatacaa
aaagaactatggtttttaattggacacaaaggcgatgaactgctgatgattaaaaggtgt
caaccaaaacaaatgaataaagaggtcataatacattgtgatctatttattcccgaagaa
attcgtggcgaagaattgcaattttcccttattaatgacgctttaggattacgttatgat
atggtccataaactaatctcttag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (3)   
   PDB (3)   
Protein domain (9)   
   Pfam (9)   
All databases (62)   

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