KEGG   Saccharomyces cerevisiae (budding yeast): YKL018W
Entry
YKL018W           CDS       T00005                                 
Symbol
SWD2, CPS35, SAF37
Name
(RefSeq) WD-repeat containing protein SWD2
  KO
K14962  COMPASS component SWD2
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    YKL018W (SWD2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sce03019]
    YKL018W (SWD2)
   03036 Chromosome and associated proteins [BR:sce03036]
    YKL018W (SWD2)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     YKL018W (SWD2)
Chromosome and associated proteins [BR:sce03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     YKL018W (SWD2)
    COMPASS/SET1 complex (yeast)
     YKL018W (SWD2)
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WD40_POC16_2nd ANAPC4_WD40 WDR55 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_RIG_2nd Beta-prop_SPT8 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st eIF2A Beta-prop_EIPR1
Other DBs
NCBI-GeneID: 853851
NCBI-ProteinID: NP_012907
SGD: S000001501
UniProt: P36104
Position
XI:404102..405091
AA seq 329 aa
MTTVSINKPNLLKFKHVKSFQPQEKDCGPVTSLNFDDNGQFLLTSSSNDTMQLYSATNCK
FLDTIASKKYGCHSAIFTHAQNECIYSSTMKNFDIKYLNLETNQYLRYFSGHGALVNDLK
MNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLVPNCIAYDPSGLVFALGNPENFEIGL
YNLKKIQEGPFLIIKINDATFSQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELI
GTRAFPMREFLDSGSACFTPDGEFVLGTDYDGRIAIWNHSDSISNKVLRPQGFIPCVSHE
TCPRSIAFNPKYSMFVTADETVDFYVYDE
NT seq 990 nt   +upstreamnt  +downstreamnt
atgaccaccgtgtccatcaataagcccaacctgctgaaattcaagcatgttaaaagcttt
caacctcaagaaaaagactgcggacccgtaacctcattgaatttcgacgataatggccag
tttctactgacctcttcttccaacgatacaatgcaattgtacagtgccacgaactgcaaa
ttcttggacactatagcctctaagaaatatggctgtcactccgctatctttacgcacgca
caaaacgaatgtatctattcctctacaatgaaaaattttgacattaaataccttaatctg
gaaacaaaccaatatctaagatatttttccggtcatggcgccctagtgaatgatttgaag
atgaaccccgtgaacgatacgtttctatcgtcgtcatacgatgaatccgttaggctttgg
gatttgaagatctctaaaccgcaagttattataccaagtctcgtaccaaattgtatcgca
tatgatccaagtggccttgtattcgcattggggaacccagagaatttcgaaatagggcta
tataatctgaaaaaaattcaggagggtcctttcttgataattaaaattaatgatgcgact
ttcagtcaatggaataaattagaattttctaacaatggaaagtatttattagttggctcc
tcgataggaaagcatttaatttttgacgcattcacaggtcaacaattattcgaactaata
ggaacaagggccttcccgatgagagaatttctagattctggatctgcttgtttcacacca
gatggtgaattcgtccttggaaccgattatgacggtaggattgccatttggaatcattct
gattcaataagtaacaaagtattaaggccgcaagggttcattccctgtgtttctcatgag
acctgccccaggtcaattgcattcaaccctaaatattcgatgtttgttaccgcagacgaa
acagtagatttttacgtgtacgatgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (36)   

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