KEGG   Saccharomyces cerevisiae (budding yeast): YPR056W
Entry
YPR056W           CDS       T00005                                 
Symbol
TFB4
Name
(RefSeq) TFIIH/NER complex subunit TFB4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03022  Basal transcription factors
sce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    YPR056W (TFB4)
  09124 Replication and repair
   03420 Nucleotide excision repair
    YPR056W (TFB4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YPR056W (TFB4)
   03400 DNA repair and recombination proteins [BR:sce03400]
    YPR056W (TFB4)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     YPR056W (TFB4)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     YPR056W (TFB4)
SSDB
Motif
Pfam: Tfb4 NFACT_N DUF7385 MIC19_MIC25
Other DBs
NCBI-GeneID: 856169
NCBI-ProteinID: NP_015381
SGD: S000006260
UniProt: Q12004
Structure
Position
XVI:671126..672142
AA seq 338 aa
MDAISDPTFKHARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVF
LNAHLAFNSANKVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRN
VDETLVEEIYKLFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLT
CGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVES
TEGLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIP
PGNKCPACDSQFDEHVIAKLKRKPVVPRLKAKKKVTKP
NT seq 1017 nt   +upstreamnt  +downstreamnt
atggatgcaatatctgatccaacgtttaagcatgctagatcaagaaaacaggttactgaa
gaatcaccatctttgcttaccgttattatagaaattgcaccaaagttatggacaactttt
gatgaggaaggaaatgagaaaggaagtataataaaggttttagaggcattgatagtattt
ctcaatgctcacttagcgttcaatagcgccaacaaagtagcagtcattgctgcatactct
cagggaatcaaatatttatacccagagagcacatctgctctaaaagcctctgaatctgaa
aataaaacccgtagtgatcttaagattattaactcagatatgtatagacgttttagaaac
gttgatgagacgctagtggaagaaatatataaactatttgagttagaaaagaaacaaatc
gaacaaaatagtcaaaggagcacgctagcaggtgccatgtcagctgggctgacttatgta
aacagaatatcaaaagagtcagtaactacctcattaaaatcaaggctacttgttcttacg
tgcgggagtggcagtagtaaagatgaaattttccaatacatccctataatgaactgtatt
ttttccgcaacaaaaatgaaatgtcccattgatgtcgtaaagattggtggttctaaggaa
agcacgtttttacagcaaacgacggatgccacaaatggcgtttatttacatgttgaatct
acagaagggctaattcaatatttagcaactgcaatgtttattgatccgtcgttaagacct
ataattgttaagccaaaccatggatctgtagattttaggacatcatgctatttaacaggg
agagttgttgccgttggattcatctgttcagtttgcctatgtgtcttatcaatcataccg
cccggaaataaatgtcctgcttgtgattctcaatttgatgagcacgtaattgccaagttg
aagaggaaaccagttgttccaaggttgaaagccaaaaagaaggtgacgaaaccatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (22)   
   PDB (22)   
Protein domain (4)   
   Pfam (4)   
All databases (48)   

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