KEGG   Sulfurospirillum deleyianum: Sdel_0554
Entry
Sdel_0554         CDS       T01126                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
sdl  Sulfurospirillum deleyianum
Pathway
sdl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sdl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Sdel_0554
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sdl03400]
    Sdel_0554
DNA repair and recombination proteins [BR:sdl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Sdel_0554
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Sdel_0554
SSDB
Motif
Pfam: UvrA_inter ABC_tran UvrA_DNA-bind SMC_N AAA_29 nSTAND1 RsgA_GTPase nSTAND3 AAA_16 AAA_25 APS_kinase AAA_33 AAA_21 ATPase Viral_helicase1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: ACZ11590
UniProt: D1AZX3
Position
535108..537924
AA seq 938 aa
MIKIYGAKENNLKNINLEIPKNKLVVFTGLSGSGKSTLAFDTLYAEGQRRYIESLSSYAR
QFLDRVGKPDVEKIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARVGKQHCHL
CGKEISQMSVADIIEQVLKLPPETKLSILAPLVREKKGSFADMIESLRHKGYVRAQIDGV
MVRLDEEIELSKTKKHTIKVIIDRVVVREENFERIASDIEKALLESYGEVELDIANAEEV
GLPTSHIHYSEHLACFDCKISFEPLEPLSFSFNSPKGACGVCDGLGIRYTLDLKKIINEN
VSIQEGAIKIFYGFNKSFYAKFLEAYCEAAGINTRIPYEELEEHQQRAILHGGVEEATFF
WKKHKLVRKWEGVIKIAYDMLKDEKELGEYMSEKICDTCGGYRLKAESLAVKVAGKNIAD
ILEMPIDKCLEFFKNDENFAYMKAQHKMISEPILKEIRERLFFLFDVGLGYISLGRDART
ISGGEAQRIRIASQIGSGLTGVMYVLDEPSIGLHERDTLKLIRTLRNLQKKGNSVIVVEH
DKETIQTADFIVDIGPGAGKFGGEIVFAGTKEELLKSTTLTAQYLNGTKIINYRENRAQE
RWIELNHVTINNIQNLDVKIPLGNLVAITGVSGSGKSSLILQTLLPVAKEYLNRAKKVNK
VAGVECIGLEQLDKVIYLDQSPIGRTPRSNPATYTGVMDEIRALFAKTKEAQIRGYSVGR
FSFNVKGGRCEKCQGDGEIKIEMHFLPDIMVKCDVCKGHRYNAQTLEIKYKGKSISDVLN
MSVDEAFEFFKAIPKIHQKVQTLVDVGLGYITLGQNAVTLSGGEAQRIKLAKELSKKDTG
NTLYVLDEPTTGLHFADVDRLVKVLHHLTDMGNSVLVIEHNMDVIKNADYLIDMGPEGGS
YGGRIIAMGTPLEVAKEASQSGSYTGKFLALELESEKK
NT seq 2817 nt   +upstreamnt  +downstreamnt
atgatcaaaatttacggtgctaaagaaaataatcttaaaaatattaaccttgaaattcct
aaaaataagctcgtggtttttacaggacttagcggaagtggtaaaagtactttagcgttt
gataccctttatgcagaaggacaacgccgttatattgagtcgctctcctcatacgcaagg
cagtttttggacagggtgggtaagcctgatgtggaaaaaattgaaggactgacccctgcc
attgcgatagatcagaaaacgaccagcaaaaatcctcgctcaacggtaggaaccattaca
gagatttatgactacttgcgtctattgtttgccagagttggaaaacagcactgtcatttg
tgtggtaaagagatttcgcagatgtctgtggcggatattattgaacaggttttaaagtta
cctcctgaaaccaagctctctatcttagcgccacttgtgcgtgagaaaaagggaagtttt
gcggatatgattgaatctttgcgccacaaagggtatgtcagagcgcaaattgatggggtg
atggtacgtttggatgaggagatagagctttcgaaaacgaaaaagcatacgattaaagtc
atcattgaccgtgtggtggtgcgagaagaaaattttgagcgcatcgccagtgacatcgaa
aaagcgcttttggagagttacggtgaggtggaactagatattgccaacgctgaggaagta
ggacttcctacctcacacattcattacagtgaacatttggcgtgttttgattgtaagatt
agttttgagcctttagagcctctttcgttttcatttaactcccctaaaggggcgtgtggg
gtgtgtgatggtttagggattcgctatacgcttgatttaaagaaaattatcaatgaaaat
gtgagcattcaagagggtgccatcaagattttttatggctttaataaaagcttttacgcc
aaatttttagaagcctactgtgaggctgctggtattaatacacgtattccgtatgaagag
cttgaagagcatcaacaaagagctatcttgcatggcggggtggaagaagcgactttcttt
tggaaaaaacataaactcgtacgcaaatgggaaggggttattaaaatcgcttatgacatg
ctgaaagatgaaaaagagttgggcgagtatatgagtgaaaaaatctgtgatacctgtggt
ggataccgtttaaaagcggagagtttagccgtaaaagtggcgggaaaaaacatcgccgac
atcttagaaatgcccatagataaatgtttagaatttttcaaaaacgatgagaactttgcc
tacatgaaagcgcaacataagatgatttctgagccgattttaaaagagatacgtgagcgt
cttttctttttatttgatgttggacttggctacattagcttgggaagggatgcgagaacc
attagtggtggtgaggcgcaacgtattcgcattgcttcgcaaattggcagtggacttacg
ggggttatgtatgttttggatgagcctagcattgggttgcatgagagagatacgcttaag
ctgattcgtaccttgcgtaatttgcaaaaaaaaggcaattcggtcattgtggtggagcat
gacaaagagaccatccaaacggctgattttattgtggatattggacctggggctggaaag
tttggcggggagattgtttttgcgggaaccaaagaggagcttttaaaaagcactacccta
acggcacagtatcttaatggtacaaaaattattaattaccgagaaaatagagcgcaagag
cgttggattgaacttaatcatgtcacgattaataacattcaaaatctcgatgtcaaaatt
cccttaggcaatttagtcgccattacaggtgtgagtggcagtggtaagagttcactcatt
cttcaaactttgcttcctgtggcaaaagagtatcttaaccgtgccaaaaaggtaaacaaa
gtagcaggggtggagtgcataggacttgagcaactcgataaagttatttatcttgaccaa
agtccgattggcagaacccctcgttctaatcctgcgacctatacaggcgtgatggatgaa
atccgtgccttgtttgccaaaacaaaagaggcgcaaatacgagggtatagcgtggggcgt
ttctcgtttaacgtgaaaggcggacgctgtgagaagtgtcaaggagatggtgagataaaa
atagaaatgcactttttacctgatattatggtgaagtgtgacgtctgtaaaggacaccgt
tacaatgcccaaaccttagagattaaatacaaaggcaaatccatttcagatgttttaaat
atgagcgtggatgaagcgtttgaattttttaaagcgattccaaaaatccaccaaaaagta
caaaccttggtggatgttggactgggctacatcactttggggcagaatgccgtgacactc
agtggcggtgaggcacagcgtattaaactggcgaaagagctgagtaaaaaagataccggc
aataccctttatgttttagatgaacccaccacagggcttcattttgccgatgtggatagg
ttagtaaaagtcttgcatcatctcaccgatatgggcaattcagtcttggttattgagcac
aatatggatgtcatcaaaaatgcggactatctcattgatatgggacctgagggaggcagc
tatggtgggcgtattatagcgatgggaacgcctttagaggtggcaaaagaggcttctcaa
tcaggcagttacacgggaaaatttttagctttagaattggaaagtgaaaaaaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (28)   

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