KEGG   Staphylococcus epidermidis PM221: SEB_00458
Entry
SEB_00458         CDS       T03289                                 
Name
(GenBank) Excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
sepp  Staphylococcus epidermidis PM221
Pathway
sepp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sepp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SEB_00458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sepp03400]
    SEB_00458
DNA repair and recombination proteins [BR:sepp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SEB_00458
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SEB_00458
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_23 AAA_16 nSTAND1 AAA_29 RsgA_GTPase nSTAND3 AAA_21 AAA_33 DnaJ_CXXCXGXG AAA_22 NACHT ATPase_2 AAA_24 cobW Viral_helicase1 SLFN-g3_helicase BCA_ABC_TP_C
Other DBs
NCBI-ProteinID: CDM13020
Position
481233..484067
AA seq 944 aa
MKGPSIVVKGARAHNLKGVDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLS
AYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKP
YCPYHGIEIESQTVQQMVDRILELEERTKIQLLAPVISHRKGSHEKLIEDIGKKGYVRLR
VDDEIVDVNEVPQLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELAEGNLTVDVIN
GEELKFSENHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLKVDLDLVIPDKNKT
LNEGAIEPWEPTSSDFYPTLLKRVCEVYKINMDKPYKKLTDRQKNILMNGSGEKEIEFTF
TQRNGGTRKRKMVFEGVVPNIDRRYHESPSEYTREMMSKYMTELPCETCHGKRLSKEALS
VYVGDYNIGEVVEYSIKNALYYFENLKLSDQDKSIADQILKEIISRLSFLNNVGLEYLTL
DRSSGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNT
LIVVEHDDDTMRAADYLVDVGPGAGNHGGEVVSSGTPNKVMKDKKSLTGQYLSGKKRIEV
PEYRREITDRKIQIKGAKSNNLKNVNVDFPLSVLTVVTGVSGSGKSSLVNEILYKALAQK
INKSKVKPGNFDEIKGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK
IRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKG
KNIADVLEMTVEEATHFFENIPKIKRKLQTLVDVGLGYITLGQQATTLSGGEAQRVKLAS
ELHKRSTGRSIYILDEPTTGLHVDDISRLLKVLNRIVENGDTVVIIEHNLDVIKTADHII
DLGPEGGEGGGTIIATGTPEEIAQNKGSYTGQYLKPVLERDSVE
NT seq 2835 nt   +upstreamnt  +downstreamnt
atgaaaggaccgtcaattgtagtaaaaggtgcacgagcacataatttaaaaggagtagat
attgaattacctaaaaacaagttgattgtcatgactggactttcaggctcaggtaaatct
tcgttagcgttcgatactatttatgctgaaggtcaacgacgttatgtggaatcgttaagt
gcatatgcgcgacaatttttaggacaaatggacaaacctgatgtagataccattgaaggt
ttgtcaccagcaatatctattgatcagaagacgacaagtaaaaacccacgttctaccgtt
gccactgtgactgaaatctatgattatattcgattattatatgcgcgtgtcggtaaaccg
tactgtccttatcacggtatagaaattgaatcacaaactgttcaacaaatggttgatcgt
attttagaattggaagaacgtacaaaaattcaattacttgctccagttatatcacataga
aaaggaagtcatgaaaaattaattgaagatataggtaagaaaggatatgtgcgtttacgt
gttgatgatgaaatcgtcgatgtaaatgaagtgcctcaattggataaaaataaaaatcac
acaattgaagttgttgttgatagacttgtagttaaagatggcattgagacgcgtttagcg
gactctattgagacagcacttgaacttgctgaaggtaatttaacagttgacgttattaat
ggagaagaacttaaattctctgagaaccacgcatgtcctatatgtggtttctctattggt
gaattagaacctagaatgtttagtttcaacagtccgtttggtgcgtgtccaacttgtgat
ggtttaggtcaaaaactaaaagtagacctagatttagtcattcctgataaaaataaaact
ttaaatgaaggtgcaattgaaccatgggaaccaacaagttcggatttttatccaacttta
ttaaaacgtgtatgtgaagtctacaaaattaatatggataagccatataaaaaattgact
gatagacaaaaaaatatacttatgaatggttctggagaaaaagaaattgaatttactttc
acgcaacgaaatggtggtactcgtaaacgtaaaatggtttttgaaggtgtggtacctaac
attgaccgtcgttaccatgaatctccctctgaatatacacgcgaaatgatgagtaaatat
atgacagagttaccgtgtgaaacttgtcatggcaaacgcttaagcaaagaagcgttatct
gtatacgtaggcgactataatataggtgaagtcgttgaatattcaattaaaaacgcgctt
tattatttcgaaaatttaaaattaagcgaccaagataaatcgattgcagatcaaatttta
aaagagattatttcaagattatcatttttaaataatgttggtttggaatatttgacttta
gatcgctcatcagggactttatctggaggggaagcacaacgtattcgtttagcaacacaa
attggttcacgattaaccggagtactatatgttttagatgaaccttctattggattacat
caaagagataatgatagattaattaatactttaaaagaaatgcgtgatttaggtaataca
cttattgtcgttgaacatgacgatgatactatgagagcagctgattatttagttgatgtg
ggtccgggagctggtaaccacggtggagaggttgtctcaagtggtacccctaataaagta
atgaaagataaaaaatccttaactggtcaatatttaagtggaaaaaaacgaattgaagtc
cctgaatacagacgagaaatcaccgatagaaagattcaaattaaaggtgctaaaagtaat
aatttgaaaaatgtaaatgtagacttcccactatctgtcttaactgttgttacaggtgtg
tcaggttctggtaaaagttcactcgtcaatgaaattttatataaagcattagctcaaaaa
attaataaatctaaagtgaaacctgggaattttgatgaaattaaaggaattgatcaatta
gataaaatcattgatattgatcaatcgccaataggtagaacaccacgttctaacccagcc
acatacactggtgtctttgatgacataagagatgtctttgcacaaacgaatgaagctaaa
atacgaggttatcaaaaaggtagatttagttttaatgtcaaaggtggacgatgtgaagct
tgtaaaggtgatggaattataaaaattgaaatgcattttttaccagatgtctatgtacct
tgtgaagtatgtgatggtaaacgctataatcgtgagactttagaggtaacatacaaaggt
aaaaatattgcggatgtattagaaatgactgttgaagaagctacgcatttctttgaaaat
attcctaagattaaacgtaaattacaaacacttgtagatgttgggttggggtacattact
ttaggtcaacaagctactacattatctggtggcgaagcgcaacgtgtaaaactcgcatca
gaattgcacaaacgttcaacggggcgttctatttatattcttgatgaaccaactacagga
ttacatgtcgacgatataagtcgtttattaaaggtattgaatcgtatagtggaaaatggt
gatacggtcgttattatcgaacacaatcttgatgttattaaaacggctgatcatattatt
gatttaggtccagaaggcggtgaaggtggaggaacaatcatcgcaactggtacacctgaa
gagattgctcaaaataaagggtcttacactggtcaatacttaaaaccagtattagagaga
gacagcgttgaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (21)   
   Pfam (21)   
All databases (28)   

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