KEGG   Prodigiosinella confusarubida ATCC 39006: Ser39006_006545
Entry
Ser39006_006545   CDS       T05290                                 
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
sera  Prodigiosinella confusarubida ATCC 39006
Pathway
sera03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sera00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Ser39006_006545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sera03400]
    Ser39006_006545
DNA repair and recombination proteins [BR:sera03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Ser39006_006545
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Ser39006_006545
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_29 AAA_16 nSTAND1 DnaJ_CXXCXGXG RsgA_GTPase AAA_25 AAA_23 NACHT Viral_helicase1 nSTAND3 cobW ExoX-like_C DUF1924
Other DBs
NCBI-ProteinID: AUH03823
UniProt: A0A2I5T4N5
Position
1418943..1421774
AA seq 943 aa
MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PEHDIPLDAQTVSQMVDNVLAQPEGKRLMLLAPIVKDRKGEHTKTLENLATQGYIRARID
GEVCDLSDPPKLELQKKHTIEIVVDRFKVRDDLAQRLAESFETALDLSGGTAIVADMDDD
AQSELLFSANFACPVCGYSMNELEPRMFSFNNPAGACPSCDGLGVQQFFDPARVIQNAEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDVDAPFENLGAEVQNVILYGSGKQSIEFKY
INDRGDTSVRRHPFEGVLHNMERRYKETESTAVREELAKFISSRPCTSCHGTRLREEARH
VFVEQTTLPQISDMSIGHAMTFFRNMKLSGQRAQIAEKILKEIGDRLKFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLDTLIHLRNLGNT
VIVVEHDEEAIRAADHVIDIGPGAGVHGGQVIAEGTVEQIMAVPESLTGQFLSGARKIDV
PETRVPADPTKVLKLIGAKGNNLKEVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR
QLNGATLGEPAPYREIHGLEYFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE
SRSRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKSIHEVLDMTIEEAREFFDAIPALARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVAGTPETVAQCEKSYTARFLKPMLERP
NT seq 2832 nt   +upstreamnt  +downstreamnt
atggataatatcgaagttcgtggtgcccgtacccataatctcaagaatatcaacctgata
attccacgcgataaactgatcgtcgtgaccggtctttccggttcaggcaagtcatcgctg
gcttttgataccttgtacgccgaaggccagcgccgctacgtggagtcgctttcagcttat
gcccgccagtttttatccttgatggaaaaaccggacgttgatcatatcgaagggctgtca
cccgcgatttctattgaacagaaatccacttcacataacccgcgttccaccgtcgggacg
attaccgaaattcatgactatctgcgtctactgtttgcccgtgtgggcgagccgcgttgc
cctgaacatgatattccgctggatgcccagaccgtcagccagatggtggataacgtgctg
gcacagccggaaggcaaacgtctgatgctgttagcgcccattgtgaaagatcgtaaaggg
gaacataccaaaaccctggaaaatctggcgacacaaggctatatccgtgcccgtattgat
ggcgaggtctgtgacctttctgacccgccgaagctggaacttcagaaaaagcacaccatt
gaaatagtggtggaccgtttcaaagtacgtgatgacctggcccagcggctggctgaatcg
tttgaaaccgcactggatctgtccggcggcaccgctattgttgcggatatggacgacgac
gctcaatctgaattgctgttctccgccaattttgcctgtccggtctgtggttacagtatg
aatgaactggaaccacgtatgttctccttcaataatcccgccggagcctgcccgagttgt
gatggcttgggggtacaacagttcttcgatccggcacgcgtaatacagaatgcggaactg
tcgttggcgggaggggcgatacgcggctgggaccggcgtaatttttactatttccagatg
cttcgctcgctggcggagcattataaatttgatgtcgatgcaccgtttgagaatctcggc
gcagaggttcagaacgtcattctgtacggctccggcaagcagtccattgaatttaaatat
atcaatgaccgtggtgatacttccgtgcgtcgtcatccgtttgagggtgtgctgcataac
atggagcgtcgctataaggaaacggaatccacagcggtacgtgaggaactggcaaaattt
atcagcagccgtccttgcaccagctgccacggtacccgcctgcgtgaagaggcgcgtcat
gtctttgtagaacagaccacgttgccacaaatttctgacatgagcatcggtcatgcaatg
accttctttcggaacatgaaactgagtggtcagcgggcacaaatcgccgaaaaaatactc
aaagaaattggtgaccgacttaaattcctggtgaatgtcgggttgaactatctgtcactg
tcccgttcggcagaaaccctatcggggggagaagcccagcgtatccgtcttgccagccag
attggtgccgggttggtgggcgtgatgtacgtgctggacgaaccgtctatcggtctgcat
cagcgcgacaatgagcgtctgctggataccttgattcatctgcgtaatctgggcaatacc
gttattgtggtcgagcatgatgaagaggcgatccgtgcagctgatcatgtcattgatatt
ggccccggtgctggtgttcacggcggacaagtgatcgcggaaggtacggtcgagcagatc
atggcggtgccggaatcacttaccggtcagttcctcagtggtgcgcggaaaatcgatgtg
ccggaaacgcgtgtcccggccgatcccaccaaagtgctgaagctgataggtgccaaaggt
aataacctgaaagaggtaactctgacgttaccggtcgggttgttcacctgtattaccggg
gtttccggttcaggcaagtctacattgatcaacgataccctgttcccgatcgcgcagcga
caactgaatggtgcgacgctgggtgaaccggcgccgtatcgtgaaattcacgggttggaa
tatttcgacaaggtgattgatattgaccaaagcccgattggtcgtactccgcgttccaac
ccggcaacctataccggtatttttacgccgattcgtgaactgtttgctggcgtgccggaa
tcccgcagccggggatataaccctggtcgtttcagttttaacgtgcgaggcgggcgttgc
gaggcttgtcagggtgatggtgttatcaaagtggaaatgcatttcctgcccgatatttat
gtgccgtgtgatcagtgtaaaggcaagcgctataaccgcgagacgttggagattaaatac
aagggcaaaagtattcacgaagtgctggatatgacgattgaagaagcccgtgaattcttt
gatgccattccggcactggctcgcaagctgcaaacgctgatggatgtcgggctgtcctat
atccgtttggggcagtcggccaccacgctttcggggggtgaggcacaacgtgtcaaactg
gcgcgtgaactgtcgaagcgtggcaccgggcaaacactgtatattctggatgagcctacc
actggcctgcattttgccgatatccagcaattgctggcggtactgcaccagttacgagac
cagggcaataccatcgtagtgatcgagcataatcttgacgtgatcaaaacagccgactgg
attgtcgatctcggtccggaaggtggcagtggcggcggtgagattctggtagcgggcacg
ccggaaacggtggcgcagtgtgagaaatcgtatactgcacgttttctgaagccgatgctg
gaacgtccgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (25)   

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