KEGG   Shewanella frigidimarina: Sfri_0428
Entry
Sfri_0428         CDS       T00395                                 
Name
(GenBank) ATP-dependent DNA helicase Rep
  KO
K03656  ATP-dependent DNA helicase Rep [EC:5.6.2.4]
Organism
sfr  Shewanella frigidimarina
Brite
KEGG Orthology (KO) [BR:sfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfr03400]
    Sfri_0428
Enzymes [BR:sfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Sfri_0428
DNA repair and recombination proteins [BR:sfr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Sfri_0428
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 Viral_helicase1 AAA_12
Other DBs
NCBI-ProteinID: ABI70290
UniProt: Q088M5
Position
468864..470876
AA seq 670 aa
MKLNPGQNEAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA
REMKERVAQSMGRKEARGLWISTFHTLGLEIIKREHKVLGLKAGFSLFDDQDTFALLKEL
TEDELDDDKDLIKSLASAISNWKGGLVIPQQAKSMAKDEQSQLFAMLYARYAQHMKSYNA
LDFDDLILIPTLLLRMNEEVRTRWQTKIQYLLVDEYQDTNTSQYELVKLLVGERARFTVV
GDDDQSIYSWRGAKPQNLVLLGTDFPRLKLIKLEQNYRSSQRILRAANILIANNPHVYDK
ALFSELAYGEPLRVLIAANEEQEAERVVAEIIRHKFVGRTKFGDYAILYRGNHQSRLLER
SLMTNRIPYKLSGGTSFFSRAEIKDIMGYLRLVVNPDDDNAFLRVVNLPKRGIGPASLER
LGNFANQKHISLFEAIFDVELNHHLAPAAVNSLYQFGKFIVDTGEVASRGEPVEAIKQLI
RKINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLEGDELDEPMTLPEVVTRLTLRDM
MERNSEDEGGDQVQLMTLHASKGLEYPFVFMVGVEERILPHQSSIDEDNVDEERRLAYVG
ITRAQRELWFVICRERRQFGETMRCEPSRFLLELPQDDLIWENRKPVQTEEQRVETSKSH
IANIRDMFKK
NT seq 2013 nt   +upstreamnt  +downstreamnt
atgaaactcaatccagggcaaaatgaagccgtacattatgtatcgggtccatgcttagtg
ctcgctggcgcggggagtggtaaaacacgtgtaatcattaataaaattgcttacttagtt
gaaaaatgtggctataaagctcgcaatattgccgcagtaacctttaccaacaaagccgcc
cgagaaatgaaagaacgtgttgctcagtcgatgggccgcaaagaagcgcgcggattatgg
atttctacttttcatacattagggctcgaaattattaagcgcgaacataaagtgcttggg
cttaaagcgggtttttcattgtttgatgatcaagacactttcgcgttattaaaagaactg
accgaagatgagttagatgatgataaagacctgattaaatctttggcatcagcgatatcg
aattggaaagggggattagtgatccctcagcaagcaaaaagtatggcaaaagacgagcaa
agccaattatttgccatgttatatgctaggtatgctcagcatatgaagtcctataatgcg
ctcgattttgatgacctaatcttaattccaacattattgttgcgaatgaatgaagaagtg
cgcacccgttggcaaactaaaattcagtacttgctggtggatgagtatcaagataccaat
accagccaatatgagttagttaagttactggtgggtgagcgtgcacgttttacggtggta
ggtgatgatgatcagtccatttactcttggcgtggtgcaaagccacagaacctagtgtta
ttaggaactgattttccaagacttaaactgatcaaattagagcaaaactatcgttcaagc
caacgaattctccgagcagccaatattctgattgctaacaaccctcacgtgtacgacaag
gcgttatttagtgagttagcttatggtgagccattaagagtattaattgccgctaacgaa
gagcaagaagctgagcgagtggtggcggagataattcgacataagtttgttggccgaact
aagtttggtgattacgccattttatatcgaggtaatcatcaatctcgtttactcgaacga
tcgcttatgaccaaccgtattccttataagcttagtggcggtacttcatttttctctcgt
gcagaaattaaagatatcatggggtatttgcgtttagtggttaacccggacgatgacaat
gcttttttgcgggtggttaacttacctaagcgtggtattggccccgcgtcgctggagcgt
ttaggtaattttgccaatcaaaagcatatatcattatttgaagctatttttgatgttgaa
ctcaatcatcatttagcgcctgcagcggttaactctttatatcagtttggtaagtttatt
gttgataccggtgaagtcgcctcgcggggtgagcctgttgaagcgattaaacagcttatt
cgtaaaattaattacgaagattatctgtacgaaacgagtaccagcgctaaagcggctgaa
atgaggatgaagaatatttcggaattataccgctgggttaccgaaatgctcgaaggtgat
gagttagatgaacctatgactttgccagaagtggttactcgattaaccctgcgcgacatg
atggaacgcaacagcgaggatgagggtggcgatcaagttcagttaatgacgttacatgcc
tctaaaggactggaatatccctttgtatttatggtgggcgttgaagagcgtattttgccg
catcagtcgagcattgacgaagacaatgttgatgaagaacgacgtctggcgtacgtgggt
attacccgtgcacaacgtgaattgtggtttgtaatatgccgtgaacgtcgccagtttggt
gaaacgatgcgatgtgagccgagccgttttttacttgagttgcctcaagatgatttaatt
tgggaaaaccgtaagcctgttcaaacagaagagcagcgtgtcgaaaccagtaaaagtcac
atcgccaacatacgcgatatgtttaaaaaatag

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