KEGG T04918: 107568652

Sinocyclocheilus grahami (golden-line barbel): 107568652

Entry

107568652         CDS       T04918

Symbol

chd1

Name

(RefSeq) chromodomain-helicase-DNA-binding protein 1

K11367

chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]

Organism

sgh Sinocyclocheilus grahami (golden-line barbel)

Brite

KEGG Orthology (KO) [BR:sgh00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sgh03021]
    107568652 (chd1)
   03036 Chromosome and associated proteins [BR:sgh03036]
    107568652 (chd1)
Transcription machinery [BR:sgh03021]
Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     107568652 (chd1)
Chromosome and associated proteins [BR:sgh03036]
Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     107568652 (chd1)
    SLIK complex
     107568652 (chd1)

SSDB

Motif

Pfam:

SNF2-rel_dom CDH1_2_SANT_HL1 CHD1-like_C Helicase_C Chromo HDA2-3 DEAD CHDCT2

Other DBs

NCBI-GeneID:

107568652

NCBI-ProteinID:

XP_016110111

Position

Unknown

AA seq 1773 aa
MDGRSEDESVSNGSGESSNSGDESGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSGSH
SDSEKSKEKNDQDNKIDGAAFWKSNPSILTVQRSAMLRKQQLQQQQQSSSNTGSDEDSSS
SDESDDDSKSRSKGSGSDSDSGSGSGSGSSDSPAEEQENSDESVSDYEPSHKVKSRKPSN
KANARNGKNSKAPKKKPSRSSSDEEDDYKKALAGPRRQATVNVSYKEDEELKTDSDDLVE
VCGEDVPPPEEDEFETLERVMEVRIGRKGATGAVTTVYAVEADGDPNANFDPSRQPGEVQ
YLMKWKNWSHIHNTWETEETLKQQNVKGMKKLDNFKKKDQEKKKWLKAASPEDVEYFNCQ
QELMDDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLSYFECSWEDGALIARKFQKCI
DDYMSRNQCKTIPSRECKVLKQRPRFVPMKKQPLYIGADGLELRDYQLEGLNWMAHSWCK
GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQLWAPQINV
VVYLGDISSRNMIRTHEWMHPQTKRLKFNVLLTTYEILLKDKSFLGNVSWAFIGVDEAHR
LKNDDSLLYKTMIEFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEMFEEEHGKG
RDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAVQKQYYKWILTRNYKALS
KGTKGSKSGFLNVMMELKKCCNHCYLIKSPEDNEFYNRQEGLQHLIRSSGKLILLDKLLV
RLKERGHRVLIFSQMVRMLDILAEYLKYRQFLFQRLDGSIKGEMRKQALDHFNAEGSEDF
CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSV
EEEIIERAKKKMVLDHLVIQRMDTTGKTVLDTGAAPSSSTPFNKEELSAILKFGAEELFK
ESEGEELEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFSMMEEEEIDMDTER
DGRHDINWDDIIPEEQRRRLEEEERQKELAEIYLLPRMRKCAKQINFNGNEGRRSRNRRY
SGSDSDSGTDRKRPKKRGRPRTIPRENIKGFTDAEIRRFIKSYKKFGGPLERLDAIARDA
ELVDKSEHDLRRLAETVHNGCLKTLRENPCGPERSSGGRRGKVKGPTFRISGVQVNAKLV
ISHEEELAPLHKAIPADPEERKRYIIPCHSKAAHFDIEWGKEDDSSLLIGIYEYGYGSWE
MIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQKQAGTANSRKR
KPRGKKNKAVKPKMDDMTNSLSSAPPSDKSSEEEEENEEEEKETPPAKPANRRACVSERP
VKEEEDEDEESDEDEPEDKEPEEKDIMEKVVKKEIKKEKKEEGRDSKEREPKEKEMKSEP
EEEAPAEKAVEVKAEVREKKADTPVHTPSGGDALPLSDESEELDQKTFSVCKERMRPVKA
ALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLREYTNPEQIKQWRKNLWIFVSKFT
EFDARKLHKLYKHAIKKRQENAQAVEQNTSSVNTQIFKHADVERIKESQQDDSSRDSYSS
DRHHSSRYHEHSKDRHAGDSHRKSSDARKRPYSFSNGKDHRERERDQYRERGERQDSRYY
SDGKHRKLDEHRSSREHRSESNSKDRTHSEHRFHSEHRSASDYTHHKSSRDYRYHSDWQM
EHRPRSPLGHRSPFEYSSDHRSTPEQVWSGRKT

NT seq 5322 nt +upstreamnt +downstreamnt
atggatggacgcagtgaggatgaaagtgtcagcaacggcagcggagagtccagtaattca
ggtgatgagtccgggtcaggatcgggttctggctccggctcgagttcaagcagcagcagt
tctagcagtagccaatcagggagcagtgactcaggaagcggctcggattctggaagccac
tcggactcggagaaatccaaggaaaagaatgatcaagacaacaaaatcgatggagcagcg
ttttggaagtccaatcccagtatcctgacagtgcaaaggtcagccatgctcaggaaacaa
cagcttcaacagcaacagcagagctcctcaaacactggctcagacgaggactcttccagt
agtgatgagtcggatgatgactcaaagagcaggagtaaagggtctggttcagactcggac
tcgggctctggttcaggaagtggctcgtctgactctccagcagaggagcaagagaacagt
gacgagtccgtgtcagactatgagcccagtcacaaagtcaagagcagaaaaccttcaaac
aaggccaatgccaggaatgggaaaaatagcaaagctcccaagaagaaaccctcccgctcc
tcctcagatgaagaggacgattataaaaaagctctagcgggacctcggcggcaggccaca
gtcaatgtgagctacaaagaagatgaggaactgaagactgattcagatgacctggtggag
gtgtgtggagaggacgtcccaccgccggaggaggacgagtttgagacactggagagagtt
atggaagtgaggataggccggaaaggagcaactggggccgtaaccacggtgtatgcagta
gaagcagatggagaccccaacgccaactttgaccccagcagacagccaggagaggtgcaa
tacttgatgaaatggaagaactggtcccacattcacaacacctgggagacagaggagacg
ctcaaacaacagaacgtgaagggcatgaagaaactggacaacttcaagaaaaaagatcag
gagaaaaagaaatggctcaaagctgcctcgcctgaggatgtggagtacttcaactgtcag
caggagctcatggatgacttgcattcacaatatcagcttgtggagagaatcatcggacat
tcaaatcagaagtctgccgcaggttttccagattacctttgtaaatggcaggggctgtca
tactttgagtgcagctgggaagacggtgctctcattgccagaaagtttcaaaagtgcatt
gatgattacatgagtcggaatcagtgcaaaaccattccctccagagagtgcaaggtttta
aaacagaggccacggtttgtacccatgaagaagcagcctctctacattggcgcagatgga
ttggagctgcgggactatcagttggagggtctgaactggatggcccattcttggtgcaaa
ggaaacagttgcatcctggcagatgagatgggtctgggcaaaaccatccagactatcagc
ttcctcaattacttgttccatgagcaccagctttacgggcccttccttctggtggtgcct
ctgtctaccctcacatcctggcagagggagatccagctctgggctcctcagataaatgtt
gtggtgtacctgggagacatcagcagcagaaacatgatccggacacatgaatggatgcat
ccgcagaccaaacgactgaagttcaacgtgttgcttactacatatgaaattctgctgaag
gataagtcctttttaggaaacgtgagctgggcgttcattggtgtagacgaggcccatcgg
ctgaagaacgatgactcgctcctctacaagactatgatcgagttcaaatccaaccacagg
ctcctgatcacaggcacacccctccagaactcactcaaagagctctggtctctactacat
tttattatgcctgaaaaatttcactcgtgggagatgtttgaagaggaacatggcaaaggc
agagactctggctataccagccttcataaggagctggagcccttcctgctgcgcagagtg
aagaaggatgtggagaaatctctgcctgccaaggtggagcagatcctcagggtggagatg
agcgctgttcagaagcaatactacaagtggatattgacgagaaactataaagccctgagt
aaaggcactaaaggaagcaagtcaggcttcctcaacgtcatgatggagttgaagaaatgc
tgtaaccactgctacctcatcaaatcgcctgaggacaacgagttctacaacagacaagaa
ggcctacagcaccttattcgcagcagtgggaagctgattcttctggataaactgctggtt
cggctgaaggaacgagggcaccgtgtgcttatcttctcccagatggttcggatgctggac
atcctagcggagtacctgaagtaccggcagttcttattccagagactggatggttccata
aagggtgagatgaggaagcaggcgttagatcatttcaatgcagagggctctgaggatttc
tgcttcctgttgtccacgcgagcaggtggtctgggcattaacctggcctctgcggataca
gtggtcatttttgactccgactggaaccctcagaatgacctgcaggcccaggccagagcg
cacaggattggtcagaaaaaacaggtgaatatataccgtctggtgacaaagggctcggtt
gaggaggaaattattgagagagccaagaagaaaatggtgttggaccacctagtaattcag
aggatggacaccacggggaagactgtgcttgacacgggtgctgctccttcaagttccact
ccattcaacaaggaggaactgtcagccatcctgaagtttggtgctgaagaacttttcaaa
gagtcggagggagaggagctggagcctcaggagatggacattgatgaaatcctgaagaga
gcagagaccagagagaatgaccctggaccatcgactgtaggagaggagctcctctctcaa
tttaaggtagcaaatttctccatgatggaggaggaggagattgacatggacaccgagagg
gatggtagacatgatattaactgggatgacattatcccagaggagcagcggaggagactc
gaggaagaggagcgacaaaaagagctagcagagatctatttactgccccgcatgaggaag
tgcgctaaacagatcaactttaatggaaacgagggcaggcgtagcaggaacagacgatac
tctggttcagacagcgattcgggtaccgacagaaagaggcccaagaaacgaggaagacct
cgaactattccaagagagaacattaagggtttcactgatgctgagatacgcaggtttatt
aaaagttataaaaagtttggtggccctttagaaaggcttgacgctatcgctcgcgatgct
gagttggtggataaatctgagcatgatctgcggcggctggctgagaccgtacacaacggc
tgtttgaaaacgctaagagagaacccctgtggacctgaacgaagctcaggaggcaggcga
gggaaggtgaaaggacccaccttcaggatctcaggggttcaggtcaatgctaagctggtg
atctctcatgaggaggaactggcaccattacacaaggccattcccgctgaccctgaggag
aggaagaggtatataatcccatgtcactcaaaggcagctcattttgacattgagtggggt
aaagaggacgactccagcctgcttattgggatttatgagtacggctatggcagctgggag
atgatcaagatggacccagacctcaacctcacacacaagctccttcctgatgaccctgac
aagaagccacaggccaagcagttgcagacacgagctgactacctcatcaaattactgagc
aaagacctcgccaagaaggaagcacagaaacaagccggcacagcaaattcacgcaagaga
aaaccacggggcaagaagaataaagcggtaaagccgaagatggatgacatgacgaacagt
ctgtcctctgcaccgccatcagataagagctctgaagaagaggaagagaatgaggaagag
gaaaaggaaactcctccagctaagccagccaacagaagagcatgtgtgtcagagcggccg
gtaaaggaggaggaggatgaggatgaagagtctgatgaggacgagcctgaggataaagaa
cccgaagagaaggacataatggagaaagtggtcaaaaaagagattaagaaggagaagaaa
gaggagggtcgggacagcaaagagagggaaccaaaagagaaggagatgaaatccgagcct
gaagaagaggctcctgcagagaaggctgtagaggtgaaagcagaagtgcgggagaagaaa
gctgacacccctgtgcacacgccctcaggaggagatgcacttcccctgtctgacgagtct
gaagaactggaccagaaaaccttcagcgtgtgtaaggagcgaatgcggccggtgaaggca
gcactcaagcagctggatcgtccggagaagggtctgtctgagcgcgagcagctggagcac
acgcgtcagtgcctgatcaaaataggagatcacatcaccgagtgtttgagagaatacacc
aaccccgaacagatcaaacagtggaggaaaaatttgtggatatttgtttcgaaattcacg
gaatttgatgcaaggaagctgcataaactatataaacacgccatcaagaaaagacaagaa
aatgctcaggcagtggagcagaacactagctctgtaaatacacaaatctttaaacatgca
gatgttgagcggataaaggagtcccagcaggacgacagcagcagagacagctacagctct
gacagacatcactcatctcgctaccatgagcacagcaaagatcggcacgctggcgactcg
caccgaaagagctccgatgccaggaagagaccctactccttcagcaatggcaaagaccac
cgagagcgagagagagaccagtacagagagagaggagagcgacaggacagcagatactac
agcgacggcaagcacaggaagctggacgagcaccgctccagcagagagcaccgctcagaa
agcaactccaaggacaggactcactccgaacaccgcttccactctgagcaccgctctgcc
tcagactacacgcatcacaaatcgtcccgggactaccgctaccattcagactggcagatg
gagcaccggccgcgctctccgctgggacaccgctcgcccttcgagtactcgtcagaccac
agaagcacacctgaacaggtctggagcggccgcaagacataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

Download RDF

DBGET integrated database retrieval system