KEGG   Shewanella sp. MR-7: Shewmr7_3558
Entry
Shewmr7_3558      CDS       T00389                                 
Name
(GenBank) ATP-dependent DNA helicase UvrD
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
shm  Shewanella sp. MR-7
Pathway
shm03420  Nucleotide excision repair
shm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:shm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Shewmr7_3558
   03430 Mismatch repair
    Shewmr7_3558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:shm03400]
    Shewmr7_3558
Enzymes [BR:shm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Shewmr7_3558
DNA repair and recombination proteins [BR:shm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Shewmr7_3558
   MMR (mismatch excision repair)
    Other MMR factors
     Shewmr7_3558
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_30 DEAD ResIII
Other DBs
NCBI-ProteinID: ABI44538
UniProt: Q0HQR7
Position
complement(4219402..4221570)
AA seq 722 aa
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDADLPQSFQILDSDDQV
RLLKRILKSLNLDEKQYPPRQAQAYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPTATTIRLEQNYRSKGNILKASNALIANN
PERLGKELWTDEADGEPISLYCAFNEMDEARFIVGRINDWYEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIGD
RTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFMDLIVTLQEETQDMALYRM
TDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMPEELEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
AQKSAVANDTGFSVGQRVHHPKFGDGKVTNFEGSGAQARVQVNFSDFGSKWLVVAYARLE
AR
NT seq 2169 nt   +upstreamnt  +downstreamnt
atggacgtatcttctttacttgacggcctaaatgataaacagcgtgaggctgttgcggca
ccgcaatctagcatgttagtgcttgcgggcgcaggcagtggcaaaacgcgagtattaacc
caccgtatcgcgtggttaatgcaggttgaacagcagagtccttactcgattttagccgtg
acgtttaccaataaagccgcggccgagatgcgcgagcgggttgaaaaagtcgctggtacc
aatatggggcggatgtggattggtactttccacgggctggcgcatcgtttattacgcact
cacttccaagatgcggatttaccgcaaagcttccaaattctcgattcggacgatcaggtg
cgcttgctgaaacgcatccttaaaagtttgaatctggatgaaaaacaatatcctccccgt
caggcgcaggcctatatcaatggcaagaaagaccaaggtttgcggcccaagcatatcgat
gcgggtggttttccgattgagcaaaacctgctgaagatttatcaggtttatcaagagtct
tgcgaccgcgcgggtttagtcgactttgccgaaatcctgctgcgtgcccacgagctgtgg
ctcaataaaccgcatctgctggcgcattatcaggagcgttttaagcatattctggtggac
gagttccaggatactaacgccatccaatatgcgtggatccgcgtgctggcaggccaaacc
gctaacgtgatgatagtgggtgacgacgaccaatccatttacggttggcgcggcgctcag
gttgaaaacctgcaccgcttcctgcgggatttccccacggcgactacgattcgcctcgag
caaaattatcgctccaagggcaatattttgaaggcgtcgaacgcccttatcgccaataac
cccgagcgtttaggtaaagagttgtggaccgacgaagccgatggtgagccgatttccctc
tactgcgcctttaacgaaatggacgaggcgcgctttattgtcggtcgtatcaatgattgg
tacgaaaaaggcggcaatttaagtgactgcgcgattttatatcgctcaaacgctcagtcg
cgcgtgctcgaagaagccttattacacaaaggcttagcctatcgtatttacggtggcctg
cgcttcttcgaacgccaagagattaaagatgctatgggttatatgcgtcttatcagcaat
aaaaatgacgatgccgccttcgagcgcgtggtcaatacgccgccccgtggcattggcgat
cgcactctagatattttacgcactaccgcgcgtcagcaggaactcaccctgtggcaggct
tgtttacgtttgctggatgaaaaggtgctcgcaggccgagccgcctcggcggtacgtggc
tttatggatcttatagttaccctgcaggaagaaactcaggatatggcgctgtaccggatg
acggacacagtgatccaagcctctgggcttaaggccatgtacgaggcggagaaaggcgaa
aaggcccacgcccgtatcgaaaacttagaggaactcgttactgcggcgcgcaccttcgaa
atgccagaggagcttgaggatatgggcgagcttaacgccttcctatcccatgcggcccta
gaggcgggcgaaggtcaggccgatgcctttaccgatgccgtacagttgatgacactgcac
tcggccaaggggctggagtttaccatggtgtttatggcgggcgtcgaggaggggattttc
ccgagtaagatggcgctcgaagagggcgacagactcgatgaggaacgccgcctctgttac
gtgggcatgacccgcgcgatggaaaaactctatatcacctatgccgaatcccgccgtatt
tatggccgtgaagattatgcccgtccatcgcgttttattaaggaaattccgccgcaatat
gtggacgaaattcgcttaaaagcgcaggtgtcaacgccgatggccaataatcgcttcagc
gcgcaaaagtcggcggtcgccaacgatactggctttagcgtcggccaaagggtgcatcat
ccaaagtttggtgacggtaaagtgactaacttcgaaggcagtggcgcgcaggcgcgggta
caggtgaattttagtgattttggcagtaagtggctggtggtcgcctacgcgcgtttagag
gcgcgttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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