KEGG   Sarcophilus harrisii (Tasmanian devil): 100935122
Entry
100935122         CDS       T02286                                 
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04820  Cytoskeleton in muscle cells
shr04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:shr00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100935122 (COL5A2)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100935122 (COL5A2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:shr00536]
    100935122 (COL5A2)
Glycosaminoglycan binding proteins [BR:shr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100935122 (COL5A2)
SSDB
Motif
Pfam: Collagen COLFI VWC TILa
Other DBs
NCBI-GeneID: 100935122
NCBI-ProteinID: XP_023355098
Ensembl: ENSSHAG00000006566
Position
3:380044887..380241219
AA seq 1499 aa
MMANWVEARTLFILTFLLGQFVSIKSQDEGEDDGYDEEIACTQNGQMYLNRDIWKPAPCQ
ICVCDNGAILCDQIQCQEVLDCADPITPSGECCPVCPNTAGGGNNPSFGRGRKGQKGEPG
LVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGARGPQGIDGEPGIPGQPGAPGPPGHP
SHPGPDGISRPFSAQMAGLDEKSGLGSQMGLMPGSVGPVGPRGPQGLQGKQGGVGPAGPP
GEPGEPGPMGPVGARGPEGPPGKPGEDGEPGRNGNPGEVGFSGSPGARGFPGAPGFPGLK
GHRGHKGLEGPKGEIGATGAKGEAGPTGAMGAMGPMGPRGMPGERGRLGPQGSPGQRGAH
GMPGKPGPMGPLGITGSAGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSQGLP
GTVGTDGTPGAKGPTGSPGTSGPPGSTGPPGSPGPQGSTGQPGIRGQTGDPGVPGFKGEA
GPKGEPGPHGIQGPIGPIGEEGKRGPRGDPGTVGPPGPVGERGSPGNRGFPGSDGLPGPK
GAQGERGPAGSSGPKGGQGDPGRTGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRP
GPAGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPS
GLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGER
GEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDAGPPGLQGMPGERGIAGTPGPKGDR
GGLGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGTPGSRGTPGSRGEN
GPTGAVGFAGPPGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGR
GTQGPPGATGFPGSAGRVGPPGPTGATGPAGPLGEPGKEGPPGLRGDPGSHGRIGDRGPT
GPPGSPGDKGDSGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKA
GPTGAPGDKGPSGPVGPPGVNGPVGEAGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLP
GSQGAPGTPGPVGATGDAGPRGDPGSRGPVGPPGRTGKRGLSGPQGPRGDKGDHGDRGDR
GQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPP
GMRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAPLGDIMGHYDESMSDPLPEFTEDQAAPD
DKNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPSKPSGQYWIDPNQGC
VEDAIKVYCNMETGETCIPANPSSVPRKTWWASRSDHKPVWYGLDMNRGSQFVYGDSQSP
NTAVTQMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVILKGANDLEIKAEGNSR
FRYTVLEDSCTRRNGNVGKTVFEYRTQNVARLPIVDLAPVDIGSTDQEFGIEIGSVCFV
NT seq 4500 nt   +upstreamnt  +downstreamnt
atgatggcaaactgggtggaagcaaggactctcttcattcttacttttttattagggcaa
tttgtctcaataaaatcgcaggacgaaggcgaggatgatggatatgatgaagaaatagcc
tgcacacagaatggtcagatgtacttgaacagagatatttggaaaccagccccttgtcag
atctgtgtctgtgataatggagccattctttgtgaccagatccagtgccaggaagtgtta
gattgtgcagatccaattactccttctggagagtgctgtcctgtctgtccaaatacagct
ggtggtggcaataatcccagttttggtagaggaagaaagggacaaaaaggagaacctgga
ttagttccagttgtaactggaatccgaggtcgcccaggaccagctggacctccaggatct
caaggcccaagaggagaacgaggccctaaaggaagacctggtgcacgtggtccacagggt
atagatggagaaccgggaattcctggccaaccaggtgctcctggacccccaggacatcca
tcccatccagggccagatggcatcagcaggccattttcggctcagatggctgggttagat
gaaaaatctggacttggaagtcagatgggactgatgcctggctctgtggggccagtggga
ccaagagggcctcaaggtttacaaggaaaacaaggcggtgttggtcccgcaggccctcca
ggtgaacctggtgaaccaggcccaatgggtccagttggtgcccgtggtccagagggacct
cctggaaaacctggtgaagatggtgaaccaggtagaaatggaaatcctggtgaagtaggg
ttttcaggatctccgggggcacgtggctttcctggtgcacctggttttcctggtctaaag
ggacacaggggacacaaaggtcttgaaggccctaaaggagaaattggagctacaggggca
aagggtgaagctggccccacgggtgcaatgggtgcaatgggtcctatgggtcccagagga
atgccaggagagagagggagacttggtccacaaggttctcctggacaacgtggtgctcat
ggaatgcctggaaaacctggaccaatgggtccacttgggataactggctctgctggattt
ccaggaaatcctggaatgaagggtgaagcaggtcccactggagcacgtggacctgaaggt
cctcaaggacagagaggtgaaacaggacctccaggaccagttggatctcagggcctccct
ggaacagtgggaactgatggcacacctggtgcaaaagggccaacaggttctccaggtact
tcaggtcctcctggctctacaggacctcctggctctccaggacctcagggcagcacaggt
caacctggaattcggggccaaacgggagatcctggagtgccaggcttcaaaggagaagca
ggtccaaaaggtgaaccgggcccacatggcattcagggtccaataggtccaattggtgaa
gagggaaaaagaggtcctagaggagacccaggaactgttggtcctccaggtccagtagga
gaaaggggctctcctggcaatcgtggttttcctggttctgatggcttgcctggaccaaag
ggagcacaaggagagcgtggtccagcaggttcttcaggacccaaaggaggtcaaggtgat
ccagggcgtacaggtgaacctggtcttccaggagcaaggggtctgactggaaatcctggt
gttcaaggtcctgaaggaaaacttggacctttgggtgctccaggagaagatggtcgccct
ggaccagcaggctcaataggaattaggggacaacctggtagtatgggccttcctggtccc
aaaggtagcagtggggatcctggaaaacctggagaagctggaaatgctggtgttccagga
cagagaggagctccaggcaaagatggtgaagttggaccttcaggtcctgtaggcccctct
ggtctagcaggggaaagaggcgagcaagggcctccaggtcctacaggttttcagggacta
cctggtcctccaggtcctccaggagaaggtgggaagccaggtgatcagggtgttcctgga
gatcccggagcagttggtcctttaggtcctcgaggagaacgtggtaatccaggagagaga
ggtgaacccggaataacaggacttccaggtgaaaaggggatggctggaggtcatggtcct
gatggtcccaagggtagcccaggacctagtgggactcctggtgatgcaggtccgcctgga
ctacaaggtatgccaggagaaagaggaattgcaggaactcctggcccaaagggagacaga
ggtggtttaggagagaaaggtgctgaaggtacagctggaaatgatggtgcacgaggtctt
ccaggccccttaggtcctcctggtcctgcaggccctactggagaaaagggtgaaccaggc
ccacgaggcttagttggtactcctggctctcggggaactccaggatctcgtggtgaaaat
ggtcctactggtgctgttggttttgctggacctccgggtcctgatggacaaccaggtgta
aaaggtgaacctggagagcctggacagaaaggtgatgctggatcccctggaccccaaggt
cttgcaggatccccaggcccacatggtcctaatggagttcctggactgaagggtggtcga
ggtactcagggtcctcctggtgctactggatttcctggttctgcaggcagagttggccct
ccaggccccacaggagctacagggcctgctgggccattaggtgaacctgggaaagaggga
cctcctggtcttcgtggagaccctggttctcatggccggattggagatcggggaccaact
ggacccccaggtagcccaggagataaaggagactctggagaagatggacagcctggtcct
gatggtccacctggtccagctggaaccactggacaaagaggaattgttggtatgcccggt
cagcggggtgagagagggatgcctggcttgcctggaccagcaggaacaccaggaaaagca
ggtccaactggagcaccaggagacaaaggtccctctggccctgttggccccccaggggtc
aatggtccagtaggagaagctgggcctgagggtcctgctggtaatgatggtactccagga
cgagatggtgctgttggagaacgaggtgatcgaggtgatcctggacctgcaggtctgcca
ggttctcaaggtgcccctggaacgccaggacctgttggagctacaggcgatgctggacca
agaggagatccaggttctcgaggtcctgtaggtccacctggccgaactgggaaacgtggt
ttatcaggtccccaaggacctcgtggtgacaaaggtgatcatggagaccgaggtgatcga
ggccagaagggtcaccgaggcttcactggtctccagggtcttcctggacctcctggtcca
aatggtgaacaaggcagtgctggaattcctggaccatttggccctagaggacccccagga
ccagtgggtccttcaggtaaagaaggaaatcctgggccacttggaccaattggacctcct
ggtatgagaggaagtgtgggagaagcaggaccagagggtccgcctggtgagcctggtcct
cctggtcctccaggccctcctggtcacctcactgctcctcttggggatataatgggacac
tatgatgaaagtatgtcggaccccctcccagaattcactgaggaccaagcagcccctgat
gataaaaataaaacagacccaggagtacatgctactttgaagtcactaagtagccagatt
gaaaccatgcgtagccctgatggctcaaaaaaacatccagcacgtacttgtgatgactta
aagctttgccatccatcaaagcctagtggtcagtattggattgatcctaaccaaggatgt
gttgaagatgctattaaagtttactgcaatatggaaacaggagagacatgtattccagca
aacccatctagtgtgccccgaaaaacatggtgggccagtagatctgaccataaacctgtt
tggtatggccttgatatgaatagaggatctcagtttgtatatggagacagccagtcaccc
aatacagctgttactcagatgacctttttgcgtcttttatcaaaagaagcttcccagaac
atcacgtatatctgcaaaaacagtgtagggtacatggatgaccaagccaagaatctcaag
aaagctgtaattcttaaaggcgctaatgacctagaaatcaaagcagaaggaaacagtcgg
tttagatacactgttttggaagattcttgcactagacgtaatggaaatgtgggcaagact
gtctttgaatacagaacacagaatgtggcacgtttacccattgtggatcttgctcctgtg
gatattggcagtacagaccaagaatttggcattgaaattggatctgtttgttttgtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (53)   

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