KEGG   Stereum hirsutum: STEHIDRAFT_117367
Entry
STEHIDRAFT_117367 CDS       T03127                                 
Name
(RefSeq) WD40 repeat-like protein
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
shs  Stereum hirsutum
Pathway
shs03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:shs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    STEHIDRAFT_117367
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shs03021]
    STEHIDRAFT_117367
   03036 Chromosome and associated proteins [BR:shs03036]
    STEHIDRAFT_117367
Transcription machinery [BR:shs03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     STEHIDRAFT_117367
   Coactivators
    SAGA/TFTC/STAGA complex
     STEHIDRAFT_117367
Chromosome and associated proteins [BR:shs03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     STEHIDRAFT_117367
    STAGA complex
     STEHIDRAFT_117367
    TFTC complex
     STEHIDRAFT_117367
    SAGA complex
     STEHIDRAFT_117367
    SLIK complex
     STEHIDRAFT_117367
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 eIF2A LisH Cytochrom_D1 Ge1_WD40
Other DBs
NCBI-GeneID: 18796093
NCBI-ProteinID: XP_007298796
JGI: Stehi1_117367
Position
Unknown
AA seq 815 aa
MSAATPSSSTPEAGTSPAAVPQDIPSNASSVDRYVLEYLRTHGHTSAEQAFSESLESDDK
GKGREMSGTTITADELVKKLTSMLDRSGDISVQNALKDITSLSNTSNLQSLLSSIGPGGT
EEILTLDPTDKQEGFRELESWVDGSLDMYKPEFRPILFPIFCHFYLDLVQYGFKDAALDF
FKTFSPSLEPMHSSTLHRLSTLRLPSHVQHDEIANQFRNAKYVVRMSRTGFNLLVGWLTE
GIGGEGTGAGVGFSGDKGKRGRSAVMRVVNNHLRFDVTTASPSAVSANSWEESTGLLSSL
IPQPEGSTSSSALLTNPQAFNTSKGDLKLGPPPMSDELRAETEKMLRDQAMIDRDPYAQN
DANNVRPPPVPGVVAPTVAEQPPHPPTFKTVDIQREVERVRDARKRIRLEPSALHAVDAN
SPQAAAARQRALPSICAYTLHDVPEGSPCVTFSQDTSLMAAGFEESYIRIWSLKGESLNV
LKSDFNVNNIKDTSSIRKIREKGGPSTRKLIGHSGPVYSLAFDPIAGSSGPPKYLLSASA
DSTARLWSLDTMTNVVVYRGHQNPVWDVAWSSTGIYFATASRDKTARLWSTDRTSALRIY
AGHQNDVDCVRFHPNSLYLATGSSDKTARLWDVQKGSCLRIFVGHQDIITTLAFSPDGRY
LATAGEDLAVNLWDLGSGRRIKKMLGHTASIYSLAFSAESSMLVSGGADWTVRCWDVKAP
GGLAEKDKSKENGVASGAGVNGMVNGHGNGAGAGHGAAAGGGAGGNKNPYVIDTVETTDL
MAMFPTKRTPITNVHFTPRNLCLVAGPYLSPDQHR
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgtcggcggccactcctagctcgtccacaccagaggccggaacctcaccagccgccgtt
ccgcaagatatcccatccaatgcatcctccgtcgaccgctacgttctcgaataccttcgt
acacatggacatacgtctgctgaacaagctttcagtgaatctctggaaagcgatgacaaa
gggaaagggcgagagatgtcgggcacgaccattacagcagacgagcttgtcaagaagctc
acctccatgctagaccgttccggtgacatttcggtccaaaacgcactcaaggacattaca
tccttgagcaatacatcgaatctgcaaagcctactttcttctattgggcctggaggtact
gaggagatcttgacgctggatcccactgacaagcaggaggggtttcgagaactcgagtct
tgggttgacggatcactggatatgtacaagcccgagttccgcccaatactctttccaata
ttttgccacttctatctcgacttagtgcagtacggcttcaaagacgctgccctggacttc
ttcaaaactttctcaccatcactcgagcccatgcacagctcgactctccaccgactctct
acacttcgcctcccatcacacgttcaacacgatgaaatcgccaaccagttccgtaatgcc
aagtacgtcgtacgcatgagccgaacaggatttaacctactagtgggctggctcacggag
ggtataggaggtgaaggcaccggtgcaggtgttgggttctctggagacaaaggaaagagg
ggtcgatctgccgtgatgcgtgtcgtgaacaaccatttgcggtttgacgtcactaccgcc
agcccaagcgctgtctcggccaactcatgggaggaatccaccggtcttctttcctccctc
atccctcaaccagaaggctccacatcttcctcggcactactaacaaacccgcaggctttc
aacacttccaaaggcgaccttaaacttggtccgccaccaatgtcggacgaactgcgagca
gagacggagaagatgttacgggatcaggccatgattgacagggacccgtacgcgcagaac
gacgcgaacaacgtacggccgccacctgtacctggtgtcgtcgcaccgactgtcgcagaa
cagccgccacatcctccgaccttcaagacggtggacattcagagagaggttgagagagtg
agggatgcgaggaagaggatacgattagagccttcggctctgcacgcagtggatgcgaat
tcaccccaggctgctgctgcgagacaacgagctcttccgagtatatgtgcctatacattg
catgatgttcctgaaggatcgccttgtgttacattttcgcaggatacgtcgctgatggcc
gctgggtttgaagagagctatattcgaatatggagcctcaagggcgaatcactcaacgtg
ctcaaaagtgacttcaatgtcaataacatcaaagacacatcctccatccgcaaaattcgt
gaaaaaggcggaccctcaacgcgaaaactaataggccacagcggacctgtctactctcta
gccttcgaccctatcgcaggttcctcaggccccccaaaatacctcctctccgcctcagca
gattctactgcccgactatggtctctagacactatgacgaatgttgttgtctatcggggg
catcagaatcctgtgtgggatgtggcttggagtagtacagggatctatttcgcgacggcg
agcagggataaaacggcgaggctttggtcgactgataggacgtcggcgttgaggatttat
gcgggtcatcagaatgatgtggactgcgtcaggtttcatccgaactcgttgtacctggcg
actggctctagtgataagacagccaggctttgggacgttcagaagggttcatgtctacgt
atattcgtgggccatcaagacatcataacgacattggccttcagcccggacggcagatat
cttgccacagcgggtgaagatctagccgtgaatttgtgggacctcggttccggtcgacgc
atcaagaaaatgctgggccacactgcatcgatttactccctcgcattcagcgcagaatcg
agcatgctcgtttctggaggtgcggattggacggtcaggtgttgggacgtgaaggctcca
ggtgggttggcggagaaggataagtcgaaggaaaacggggtggcgtcgggggctggtgtg
aatgggatggtcaatggtcatggcaatggggctggagcaggacatggggccgcggcaggt
ggtggcgcgggaggaaataagaacccgtatgtcattgataccgtggaaacgacggacctc
atggcaatgttcccaacgaagaggacaccgatcacgaatgttcattttactccgaggaat
ctatgtctcgtcgctggaccttatctttctcctgaccagcaccgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (34)   

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