KEGG   Solibacillus silvestris StLB046: SSIL_1737
Entry
SSIL_1737         CDS       T02162                                 
Name
(GenBank) DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
  KO
K03092  RNA polymerase sigma-54 factor
Organism
siv  Solibacillus silvestris StLB046
Pathway
siv02020  Two-component system
siv02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:siv00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    SSIL_1737
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    SSIL_1737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:siv03021]
    SSIL_1737
Transcription machinery [BR:siv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     SSIL_1737
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_23 HTH_17 Fe_dep_repress HTH_3 Arg_repressor Get5_bdg HTH_21 Fuz_longin_2 HTH_IclR
Other DBs
NCBI-ProteinID: BAK16160
UniProt: F2F965
Position
1824370..1825707
AA seq 445 aa
MQMILNNSQKLTQVLSAKLLQHLEILQFSTNELEQYIYEKANENPLLSVIDAKVKGNYEE
IMKLAKCSINTFSSHWNRSGKEQYNIIEKTLAEKVSYEQFLIEQIPMQNNLSEVDLKILN
FLIQSLDDRLFLDTDLEFVCKKYNTSIVHVEAILNLLQTFEPVGVGARSYTEYLLIQIDH
DPYAPKMAAEFINADLKLVATQAIKKLSKKYKMPLQEVQHTVNYIKNLNPMITGDKVEAI
PYIIPDLTVKNVEGEWAIKLNRHYLPSVTIDETYVKLLKNDANNETYYRDSLKDALALME
GIEQRDKTLYDLARLLVQIQEDFFAKGMDTIKPMRLKDVSEVLDVHESTVSRAIRGKYIQ
TPHGIYALQSLFTKGLTNASGKMDSIMYIKKRIKELIEEEDKKKPLSDQQMTNVLSKEGI
QISRRTVAKYREEMKIVSSANRTFG
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgcaaatgattttaaacaattcacagaagttgacacaggttttgtcggcgaaattgttg
cagcatttagaaatacttcaattttctacgaatgaattagaacaatatatttatgaaaaa
gcaaatgaaaatccacttctttctgtaattgacgcaaaagtaaaaggaaattacgaggaa
attatgaaactggcaaagtgttcaattaacacgttttcatcacactggaatagatccggt
aaagagcaatataacatcattgaaaaaacacttgcggaaaaagtgagctatgaacaattt
ctaattgaacagattccaatgcagaataatttatccgaagtggacttgaaaattttaaac
tttttaatccagtctttagatgatcgtttatttttagatacagatttagaatttgtatgc
aaaaaatataacacgagtattgtccatgtcgaggcaatattaaatttgctccaaactttt
gaaccggttggtgttggtgctcgcagctatacagagtatttgttgattcaaattgatcat
gacccatatgctccaaaaatggcagccgaatttatcaatgccgatttaaagttggtcgca
acacaggcaattaaaaagttaagtaaaaaatataaaatgcctcttcaggaagtacaacat
actgttaactatattaaaaacttgaacccgatgattacaggagataaggtggaagcaatt
ccatatatcatcccagatttaacagtcaaaaatgttgaaggggaatgggcgattaaatta
aatcgtcactatttgccatctgttacaattgatgaaacttatgtgaaactacttaaaaat
gatgcgaacaatgaaacctattaccgagattcacttaaagatgcacttgcattaatggag
ggcattgagcagcgtgataagacactttatgatttggctcggttgctcgtacaaatacag
gaagatttttttgcaaaaggaatggatacaatcaagccgatgcgtttaaaagatgtatct
gaagtacttgatgtgcacgaatcaacagtcagcagggctatccgggggaaatatattcaa
acaccgcatggaatttatgctttgcagtctttgtttacaaaagggctaaccaatgcttcg
ggcaaaatggattccataatgtatattaagaagcggataaaagagctgattgaagaggaa
gacaagaaaaaaccattatccgatcaacaaatgacaaatgttcttagtaaggaaggaatc
caaatctcaagacgaactgtagcaaaataccgggaagaaatgaaaattgtcagttcagct
aatcgtactttcggatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (26)   

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