KEGG   Sideroxydans lithotrophicus: Slit_1765
Entry
Slit_1765         CDS       T01196                                 
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
slt  Sideroxydans lithotrophicus
Pathway
slt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:slt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Slit_1765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:slt03400]
    Slit_1765
DNA repair and recombination proteins [BR:slt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Slit_1765
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Slit_1765
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C UVR ResIII DEAD AAA_30 Kinesin
Other DBs
NCBI-ProteinID: ADE11996
UniProt: D5CSR0
Position
complement(1779220..1781244)
AA seq 674 aa
MKTITFPDSPYLLHLPFEPSGDQPTAIAQLVEGIEDGLAYQTLLGVTGSGKTFTMANVIA
RTGRPAILMAPNKTLAAQLYSEMRDFFPENAVEYFVSYYDYYQPEAYVPSRDVYIEKDSS
INEQIEQMRLSATKSMLERQDCVIVATVSAIYGIGDPVDYHGMILHLREHEKMAQRDVIQ
RLVAMQYERNDIDFNRGHFRVRGDVIDIFPAESSENALRVTLFDDEVESLSLFDPLTGHI
QTRVPRYTVYPSSHYVTPRETTLHAIETIKVELAERIAFFVKENKLVEAQRIEQRTRHDL
EMLAEIGFTKGIENYSRHLSGRGPNEAPPTLMDYLPPNALMIIDESHVTIPQIGGMYKGD
RARKENLVNYGFRLPSALDNRPLRFDEFEKIMRQTIFVSATPSTYEAEHTGQVVEQVVRP
TGLIDPTIDVRPATNQVDDLMSEVTLRTNVGERVLVTTLTKRMAEDLTEYFSEHGIKVRY
LHSDIETVERVEIIRDLRLGMFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL
IQTIGRAARHLHGTAILYADRITDSMRKAIDETDRRRAKQVAYNEAHGITPQSVVKRIKD
IIDTEYDMDAERKSLKLAQTEAKYLAMSEKEVSREIAKLEKEMLQAAKNLEFEKAAQLRD
QLKKLRESVFLSPL
NT seq 2025 nt   +upstreamnt  +downstreamnt
atgaaaaccatcaccttccccgacagcccctacctgctgcacctgccattcgagccgagc
ggcgaccagcccacagccatcgcacagctggtggaaggcatcgaggacggcctggcgtac
cagacgctgctgggcgtgaccggttccggcaagaccttcaccatggccaacgtgatcgcg
cgcaccgggcggccggccatcctgatggcgccgaacaagacactggcggcgcaactgtat
tccgagatgcgcgatttctttcccgagaacgcggtcgaatattttgtttcctattacgac
tattaccagcccgaggcctatgtgccgtcgcgcgatgtgtatatcgaaaaggattccagc
atcaacgagcagatcgagcagatgcgcctgtcggccaccaaatcgatgctggagcggcag
gactgcgtgatcgtcgccaccgtctcggccatctacggtatcggcgacccggtggattac
cacggcatgatcctgcacctgcgcgagcacgagaagatggcgcagcgcgatgtgatccag
cgcctggtggcgatgcagtacgagcgcaacgacatcgatttcaaccgcggccacttccgc
gtgcgcggcgacgtgatcgacatcttcccggcggaaagcagcgagaacgcattgcgcgtg
acgctgttcgacgacgaggtggaatcgctgtcgctgttcgacccgctcaccggccacatc
cagacgcgcgtgccgcgctacaccgtgtatccctccagccattacgtgacgccgcgcgag
acgaccctgcacgccatcgagaccatcaaggtggagctggccgagcgcatcgccttcttc
gtgaaggagaacaagctggtggaggcgcagcgcatcgagcagcgcacgcgccacgacctg
gagatgctggccgagatcggtttcaccaagggcatcgagaactattcgcgccacctttcc
gggcgcggtccgaacgaagcgccgccaacgctgatggattacctgccgccgaacgcgctg
atgatcatcgacgagagccacgtcacgatcccgcagatcggcggcatgtacaagggcgac
cgcgcgagaaaagaaaatctggtcaattacggcttccgcctgccgtccgcactggacaac
cgtccgctgcgcttcgacgagttcgagaagatcatgcgccaaaccatcttcgtctcggcc
acgccttccacctacgaagccgaacataccgggcaggtggtggagcaggtggtgcgcccg
accggactgatcgacccgaccatcgacgtgcgtccggccaccaaccaggtggacgacctg
atgtcggaagtgaccttgcgtaccaacgtgggcgaacgcgtgctggtcaccacgctgacc
aagcgcatggccgaagacctcaccgaatatttctccgagcacggcatcaaggtgcgctac
ctgcactcggacatcgagacggtggagcgtgtggagatcatccgcgacctgcgcctcggc
atgttcgacgtgctggtgggcatcaacctgttgcgcgaggggctggatattcccgaggtg
tcgcttgtcgcgatcctggatgcggacaaggagggcttcctgcgttcagagcgctcgctg
atccagaccataggccgcgccgcgcgccacctgcacggcacggccatcctgtatgccgac
cgcatcaccgactcgatgcgcaaggccatcgacgagaccgaccgccgccgcgccaagcag
gtggcctacaacgaagcgcacggcatcacgccgcaatccgtggtcaaacgcatcaaggac
atcatcgacaccgagtacgacatggatgccgagcgcaaatcgctgaagctggcacagacc
gaggccaagtatctggcgatgagcgagaaggaagtatcgagggagatcgccaagctggag
aaggagatgctgcaggctgccaagaacctggagttcgagaaggccgcgcaactgcgcgac
cagttgaagaaattgcgcgagagcgtgttcctctcccctctgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system