KEGG   Streptomyces avermitilis: SAVERM_2450
Entry
SAVERM_2450       CDS       T00126                                 
Name
(GenBank) putative ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sma  Streptomyces avermitilis
Pathway
sma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAVERM_2450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sma03019]
    SAVERM_2450
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_2450
Enzymes [BR:sma01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SAVERM_2450
Messenger RNA biogenesis [BR:sma03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SAVERM_2450
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SAVERM_2450
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 RecQ_Zn_bind Pribosyltran AAA_22 SWI2_SNF2
Other DBs
NCBI-ProteinID: BAC70161
UniProt: Q82KF3
Position
2987332..2989536
AA seq 734 aa
MSDEDQRPAPSADPRPAPDGDLRTAADAVLARLVGAPTGEARLREDQWRAIEALVAHKRR
ALVVQRTGWGKSAVYFVATALLREQGAGPTVIVSPLLALMRNQVDSAARAGIRARTINSS
NTEEWDTIQAEVAASEVDVLLVSPERLNNPDFRDQVLPKLAAATGLLVVDEAHCISDWGH
DFRPDYRRLRTMLADLPSGVPVLATTATANARVTADVAEQLGTGGGTDALVLRGPLDRES
LSLGVLRLPDAAHRMGWLAEHLNDLPGSGIIYTLTVAAAEEVTAFLRQCGHTVASYTGKT
ENADRLQAEEDLLGNRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRG
VEHAEVLLLPGKEDQAIWEYFASVAFPPEEQVRRTLDVLARADRPLSLPALEPLVELRRS
RLETMLKVLDVDGAVRRVQGGWVSTGVPWTYDTERYAWVAKQRSAEQQAMRDYVTTTACR
MEFLRRQLDDEGAAPCGRCDNCAGGRFHDSVSSGSLDAARGELGRAGVEVEPRKMWPTGL
PAVGVDLKGRIPAGELAAPGRALGRLSDIGWGNRLRPMLTPQAPDGPVPDDVAKAVVGVL
ADWAKGPGGWASAGPDAQPRPVGVVTMASRTRPQLIQSLGARIAEIGRLPLLGSIEYTGE
FAQVHRSNSAQRLKALDGALTVPPALATALKEAGGPVLLVDDATETGWTLAVAARMLRRA
GASGVLPLVLAVQA
NT seq 2205 nt   +upstreamnt  +downstreamnt
atgagcgacgaagaccaacgacccgccccgtccgcagacccgcgccccgccccggacgga
gacctgcgtaccgcggccgatgccgtgctcgcccgcctcgtgggcgcgccgacgggcgag
gcccggctgcgcgaggatcagtggcgggccatcgaggcactggtggcccacaagcgcagg
gccctggtcgtgcagcgcacgggctggggcaagtccgcggtgtacttcgtcgcgaccgcg
ttgctgcgcgagcagggcgcgggtcccacggtcatcgtctcgccactcctcgcgctcatg
cgcaaccaggtggattcggcggcccgcgcgggcatccgcgcgaggaccatcaactcgtcc
aacacggaggagtgggacacgatccaggccgaggtggccgcgagcgaggtcgatgtgctc
ctggtgagcccggagcggctcaacaaccccgacttccgcgaccaggtgctgcccaagctg
gccgccgcgaccggcctcctcgtggtcgacgaggcgcactgcatctccgactggggccac
gacttccggcccgactaccgccggctgcgcaccatgctcgccgacctcccgtccggtgtg
ccggtcctcgccaccaccgcgacggccaacgcgcgcgtcacggccgacgtggccgaacaa
ctcggcaccggaggcggcacggacgcgctcgtgctgcgcggaccgctcgaccgggagagc
ctcagtctcggcgtgctgcgcctgccggacgccgcccaccgcatgggctggctcgccgaa
cacctcaacgacctgccgggctccggcatcatctacacgctcaccgtggctgcggccgag
gaagtcacggccttcctgcgtcagtgcgggcacaccgtggcctcgtacaccggcaagacg
gagaacgcggaccggctacaagcggaggaggacctgctcggcaaccgggtcaaggccctg
gtagccacgtccgccctgggtatgggcttcgacaagcccgacctcgggttcgtcgtccac
ctcggctcgccctcgtcccccatcgcgtactaccagcaggtggggcgcgcgggccgcggt
gtggagcacgccgaggtgctgctcctgccgggcaaggaggatcaggcgatctgggagtac
ttcgcctcggtcgcgtttcccccggaggagcaggtgcgacgcacactggacgtcctggcg
cgggccgaccgaccactgtccctgcccgccctcgaaccgctggtcgaactgcgccgctca
cgtctggagacgatgctcaaggtcctcgatgtcgacggggccgtacggcgtgtgcagggc
ggctgggtctcgacgggcgttccttggacgtacgacaccgagcgctacgcctgggtggcc
aagcagcggtcggctgagcagcaggcgatgcgcgactacgtgacgacgacggcctgccgg
atggagttcctgcggcggcagctcgacgacgagggggcggctccctgtgggcgctgcgac
aactgcgccggaggccgattccacgactccgtgtcgtccgggtcgctcgacgcggcacgt
ggcgaactcgggcgtgcgggcgtcgaggtcgagccccggaagatgtggccgacgggcctg
ccggcggtcggcgtcgacctgaaggggcgtatcccggccggagagctggccgcgcccggg
cgtgcgctggggcggctgtcggacatcggctggggcaaccggctgcggccgatgctcacg
ccccaagccccggacgggccggtgccggacgatgtcgccaaggccgtggtcggtgtgctg
gccgactgggcgaaggggccgggaggctgggcctccgcagggcccgacgcacagccgcgt
ccggtgggcgtcgtcacgatggcctcccgtacgcgtccgcagctgatccagtccctgggg
gcgcggatcgcggagatcggacggctgccgctgctggggtccatcgagtacaccggtgag
ttcgcgcaggtccaccggagcaacagcgcgcagcggctgaaggcgctcgacggggcactg
accgtgccgcccgccctggccaccgcgctcaaggaagccggcggtccggtacttctcgtg
gacgatgcgacagagacgggctggaccctcgcggtggccgcgcgcatgcttcgacgagcc
ggtgcgtcgggggtgttgccgctggtcctggccgtacaagcgtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (11)   

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KEGG   Streptomyces avermitilis: SAVERM_4851
Entry
SAVERM_4851       CDS       T00126                                 
Symbol
recQ
Name
(GenBank) putative ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sma  Streptomyces avermitilis
Pathway
sma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAVERM_4851 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sma03019]
    SAVERM_4851 (recQ)
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_4851 (recQ)
Enzymes [BR:sma01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SAVERM_4851 (recQ)
Messenger RNA biogenesis [BR:sma03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SAVERM_4851 (recQ)
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SAVERM_4851 (recQ)
SSDB
Motif
Pfam: RQC DEAD HRDC Helicase_C RecQ_Zn_bind TamB
Other DBs
NCBI-ProteinID: BAC72563
UniProt: Q82DW7
Position
5896755..5898731
AA seq 658 aa
MSTAEALDESEALTTLHRVFGYEAFRGEQEAVIEHVVAGGDAVVLMPTGGGKSLCYQIPA
LVRPGTGVVVSPLIALMQDQVDALRALGVRAGFINSTQDFDERRTMEAAFLAGELDLLYL
APERLRLEGTLDLLSRGKISVFAIDEAHCVSQWGHDFRPDYLALSLLGERWPDVPRLALT
ATATHATHQEITQRLGMPTARHFVASFDRPNIQYRIVPKADPKKQLLSFLSDEHAGDAGI
VYCLSRNSVEKTAEFLSRNGIEAVPYHAGLDAGTRAAHQSRFLREEGLVVVATIAFGMGI
DKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLNDVIQQRKLIQGGEGDEA
FRRRAAAHLDAMLGLCETAQCRRGQLLAYFGQDPQSGGCGNCDTCLVPPDTWDGTIAAQK
VLSTVWRLERERRQKFGAVQIIDILLGRRTAKVIQFDHDQLSVFGIGEELTEGEWRGVVR
QILAQGLLAVEGEYGTLVLTEASGTVLRREREVPLRKDPPKPTASRSSAGSGAGSAKGER
KPKAAVAELSPELQPAFEALRAWRAEQAREQGVPAYVIFHDATLREIVTAWPSSVAELGT
ISGVGEKKLATYGEGVLGALAALGGTPGDDTQKSPTAEAEPAPDWPEMDEEPEPEEWM
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgagcacggcggaggcactggacgagagcgaggcgctgaccacgcttcaccgcgtcttc
gggtacgaggccttccgcggtgagcaggaagcggtcatcgagcacgtggtggccggcggc
gacgcggtcgtcctcatgccgaccggcggcggcaagtcgctgtgctaccagatcccggcc
ctggtcagacccggtacgggggtggtcgtctcgcccctcatcgcgctgatgcaggaccag
gtggacgcgctgcgggcgctgggcgtgcgcgccgggttcatcaactcgacgcaggacttc
gacgagcggcgcacgatggaggccgcgttcctggccggggagctggacctgctctacctg
gctccggagcgcctgcggctggaagggaccctcgatctgctctcacgcggcaagatctcg
gtcttcgccatcgacgaggcgcactgtgtgtcgcagtggggtcacgacttccgccccgac
tatctggcgctgtcgctgctgggcgagcggtggccggacgtgccgcggctcgcgctcacg
gcgacggccacgcacgcgacgcaccaggagatcacccagcgcctgggcatgccgaccgcc
cggcacttcgtggcgagcttcgaccgccccaacatccagtaccggatcgtgcccaaggcc
gaccccaagaagcagctgctgtccttcctgagcgacgagcacgcgggcgacgcgggcatc
gtctactgcctctcgcggaactcggtggagaagacggccgagttcctctcccgcaacggt
atcgaggcggtgccgtaccacgcgggcctggacgcgggcacccgtgcggcccaccagtcc
cgcttcctgcgtgaggaaggcctcgtcgtggtcgcgacgatcgccttcggcatgggcatc
gacaagccggacgtgcggttcgtcgcccacctcgacctgccgaagtccgtcgagggctac
taccaggagacaggccgtgcgggccgcgacggactgccgtccacggcctggatggcctac
gggctgaacgacgtcatacaacagcggaagctgatccagggcggcgagggcgacgaggcg
ttccggcgccgggccgccgcccacctggacgcgatgctggggctgtgcgagacggcacag
tgccgccgcggccagctgctcgcctacttcggccaggacccgcagtccggcggctgcggc
aactgcgacacatgcctcgtgccgcccgacacctgggacggcacgatcgcggcgcagaag
gtgctgtccacggtgtggcgcctggagcgggagcgacgccagaagttcggtgcggtgcag
atcatcgacatcctgctggggcggcgcacggcgaaggtgatccagttcgaccacgaccag
ctgtccgtgttcggcatcggcgaggagctgaccgaaggagaatggcgcggagtcgtacgg
cagatactggcgcaggggctgctcgcggtcgagggcgagtacgggacgctggtgctgacg
gaggcgagcgggacggtgctgcggcgcgagcgggaggtgccgctgcgcaaggatccgccg
aagccgacggcatcccggtcctcggcgggctccggcgcgggctccgccaagggcgagcgc
aagccgaaggcggccgtggccgagctctcgccggaacttcagccggccttcgaggccctg
cgcgcctggcgcgccgagcaggcgcgcgagcagggcgtcccggcgtacgtcatcttccac
gacgccacgctccgggagatcgtcacggcgtggccgtcctcggtggcggagctgggcacc
atcagcggggtgggcgagaagaagctggcgacgtacggggagggcgtgctgggggcactc
gccgcgctgggcgggacacccggtgatgacacccagaagtccccgacggccgaagccgag
ccggctccggactggcccgagatggacgaggaaccggagccggaggagtggatgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (9)   

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