KEGG   Streptomyces avermitilis: SAVERM_2450Help
Entry
SAVERM_2450       CDS       T00126                                 

Definition
(GenBank) putative ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
Organism
sma  Streptomyces avermitilis
Pathway
sma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAVERM_2450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_2450
Enzymes [BR:sma01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.12  DNA helicase
     SAVERM_2450
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SAVERM_2450
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DEAD Helicase_C ResIII RecQ_Zn_bind AAA_30 Pribosyltran AAA_22
Motif
Other DBs
NCBI-ProteinID: BAC70161
NITE: SAV2450
UniProt: Q82KF3
Position
2987332..2989536
Genome map
AA seq 734 aa AA seqDB search
MSDEDQRPAPSADPRPAPDGDLRTAADAVLARLVGAPTGEARLREDQWRAIEALVAHKRR
ALVVQRTGWGKSAVYFVATALLREQGAGPTVIVSPLLALMRNQVDSAARAGIRARTINSS
NTEEWDTIQAEVAASEVDVLLVSPERLNNPDFRDQVLPKLAAATGLLVVDEAHCISDWGH
DFRPDYRRLRTMLADLPSGVPVLATTATANARVTADVAEQLGTGGGTDALVLRGPLDRES
LSLGVLRLPDAAHRMGWLAEHLNDLPGSGIIYTLTVAAAEEVTAFLRQCGHTVASYTGKT
ENADRLQAEEDLLGNRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRG
VEHAEVLLLPGKEDQAIWEYFASVAFPPEEQVRRTLDVLARADRPLSLPALEPLVELRRS
RLETMLKVLDVDGAVRRVQGGWVSTGVPWTYDTERYAWVAKQRSAEQQAMRDYVTTTACR
MEFLRRQLDDEGAAPCGRCDNCAGGRFHDSVSSGSLDAARGELGRAGVEVEPRKMWPTGL
PAVGVDLKGRIPAGELAAPGRALGRLSDIGWGNRLRPMLTPQAPDGPVPDDVAKAVVGVL
ADWAKGPGGWASAGPDAQPRPVGVVTMASRTRPQLIQSLGARIAEIGRLPLLGSIEYTGE
FAQVHRSNSAQRLKALDGALTVPPALATALKEAGGPVLLVDDATETGWTLAVAARMLRRA
GASGVLPLVLAVQA
NT seq 2205 nt NT seq  +upstreamnt  +downstreamnt
atgagcgacgaagaccaacgacccgccccgtccgcagacccgcgccccgccccggacgga
gacctgcgtaccgcggccgatgccgtgctcgcccgcctcgtgggcgcgccgacgggcgag
gcccggctgcgcgaggatcagtggcgggccatcgaggcactggtggcccacaagcgcagg
gccctggtcgtgcagcgcacgggctggggcaagtccgcggtgtacttcgtcgcgaccgcg
ttgctgcgcgagcagggcgcgggtcccacggtcatcgtctcgccactcctcgcgctcatg
cgcaaccaggtggattcggcggcccgcgcgggcatccgcgcgaggaccatcaactcgtcc
aacacggaggagtgggacacgatccaggccgaggtggccgcgagcgaggtcgatgtgctc
ctggtgagcccggagcggctcaacaaccccgacttccgcgaccaggtgctgcccaagctg
gccgccgcgaccggcctcctcgtggtcgacgaggcgcactgcatctccgactggggccac
gacttccggcccgactaccgccggctgcgcaccatgctcgccgacctcccgtccggtgtg
ccggtcctcgccaccaccgcgacggccaacgcgcgcgtcacggccgacgtggccgaacaa
ctcggcaccggaggcggcacggacgcgctcgtgctgcgcggaccgctcgaccgggagagc
ctcagtctcggcgtgctgcgcctgccggacgccgcccaccgcatgggctggctcgccgaa
cacctcaacgacctgccgggctccggcatcatctacacgctcaccgtggctgcggccgag
gaagtcacggccttcctgcgtcagtgcgggcacaccgtggcctcgtacaccggcaagacg
gagaacgcggaccggctacaagcggaggaggacctgctcggcaaccgggtcaaggccctg
gtagccacgtccgccctgggtatgggcttcgacaagcccgacctcgggttcgtcgtccac
ctcggctcgccctcgtcccccatcgcgtactaccagcaggtggggcgcgcgggccgcggt
gtggagcacgccgaggtgctgctcctgccgggcaaggaggatcaggcgatctgggagtac
ttcgcctcggtcgcgtttcccccggaggagcaggtgcgacgcacactggacgtcctggcg
cgggccgaccgaccactgtccctgcccgccctcgaaccgctggtcgaactgcgccgctca
cgtctggagacgatgctcaaggtcctcgatgtcgacggggccgtacggcgtgtgcagggc
ggctgggtctcgacgggcgttccttggacgtacgacaccgagcgctacgcctgggtggcc
aagcagcggtcggctgagcagcaggcgatgcgcgactacgtgacgacgacggcctgccgg
atggagttcctgcggcggcagctcgacgacgagggggcggctccctgtgggcgctgcgac
aactgcgccggaggccgattccacgactccgtgtcgtccgggtcgctcgacgcggcacgt
ggcgaactcgggcgtgcgggcgtcgaggtcgagccccggaagatgtggccgacgggcctg
ccggcggtcggcgtcgacctgaaggggcgtatcccggccggagagctggccgcgcccggg
cgtgcgctggggcggctgtcggacatcggctggggcaaccggctgcggccgatgctcacg
ccccaagccccggacgggccggtgccggacgatgtcgccaaggccgtggtcggtgtgctg
gccgactgggcgaaggggccgggaggctgggcctccgcagggcccgacgcacagccgcgt
ccggtgggcgtcgtcacgatggcctcccgtacgcgtccgcagctgatccagtccctgggg
gcgcggatcgcggagatcggacggctgccgctgctggggtccatcgagtacaccggtgag
ttcgcgcaggtccaccggagcaacagcgcgcagcggctgaaggcgctcgacggggcactg
accgtgccgcccgccctggccaccgcgctcaaggaagccggcggtccggtacttctcgtg
gacgatgcgacagagacgggctggaccctcgcggtggccgcgcgcatgcttcgacgagcc
ggtgcgtcgggggtgttgccgctggtcctggccgtacaagcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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KEGG   Streptomyces avermitilis: SAVERM_4851Help
Entry
SAVERM_4851       CDS       T00126                                 

Gene name
recQ
Definition
(GenBank) putative ATP-dependent DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
Organism
sma  Streptomyces avermitilis
Pathway
sma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAVERM_4851 (recQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_4851 (recQ)
Enzymes [BR:sma01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.12  DNA helicase
     SAVERM_4851 (recQ)
DNA repair and recombination proteins [BR:sma03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SAVERM_4851 (recQ)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: RQC HRDC Helicase_C RecQ_Zn_bind DEAD
Motif
Other DBs
NCBI-ProteinID: BAC72563
NITE: SAV4851
UniProt: Q82DW7
Position
5896755..5898731
Genome map
AA seq 658 aa AA seqDB search
MSTAEALDESEALTTLHRVFGYEAFRGEQEAVIEHVVAGGDAVVLMPTGGGKSLCYQIPA
LVRPGTGVVVSPLIALMQDQVDALRALGVRAGFINSTQDFDERRTMEAAFLAGELDLLYL
APERLRLEGTLDLLSRGKISVFAIDEAHCVSQWGHDFRPDYLALSLLGERWPDVPRLALT
ATATHATHQEITQRLGMPTARHFVASFDRPNIQYRIVPKADPKKQLLSFLSDEHAGDAGI
VYCLSRNSVEKTAEFLSRNGIEAVPYHAGLDAGTRAAHQSRFLREEGLVVVATIAFGMGI
DKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLNDVIQQRKLIQGGEGDEA
FRRRAAAHLDAMLGLCETAQCRRGQLLAYFGQDPQSGGCGNCDTCLVPPDTWDGTIAAQK
VLSTVWRLERERRQKFGAVQIIDILLGRRTAKVIQFDHDQLSVFGIGEELTEGEWRGVVR
QILAQGLLAVEGEYGTLVLTEASGTVLRREREVPLRKDPPKPTASRSSAGSGAGSAKGER
KPKAAVAELSPELQPAFEALRAWRAEQAREQGVPAYVIFHDATLREIVTAWPSSVAELGT
ISGVGEKKLATYGEGVLGALAALGGTPGDDTQKSPTAEAEPAPDWPEMDEEPEPEEWM
NT seq 1977 nt NT seq  +upstreamnt  +downstreamnt
atgagcacggcggaggcactggacgagagcgaggcgctgaccacgcttcaccgcgtcttc
gggtacgaggccttccgcggtgagcaggaagcggtcatcgagcacgtggtggccggcggc
gacgcggtcgtcctcatgccgaccggcggcggcaagtcgctgtgctaccagatcccggcc
ctggtcagacccggtacgggggtggtcgtctcgcccctcatcgcgctgatgcaggaccag
gtggacgcgctgcgggcgctgggcgtgcgcgccgggttcatcaactcgacgcaggacttc
gacgagcggcgcacgatggaggccgcgttcctggccggggagctggacctgctctacctg
gctccggagcgcctgcggctggaagggaccctcgatctgctctcacgcggcaagatctcg
gtcttcgccatcgacgaggcgcactgtgtgtcgcagtggggtcacgacttccgccccgac
tatctggcgctgtcgctgctgggcgagcggtggccggacgtgccgcggctcgcgctcacg
gcgacggccacgcacgcgacgcaccaggagatcacccagcgcctgggcatgccgaccgcc
cggcacttcgtggcgagcttcgaccgccccaacatccagtaccggatcgtgcccaaggcc
gaccccaagaagcagctgctgtccttcctgagcgacgagcacgcgggcgacgcgggcatc
gtctactgcctctcgcggaactcggtggagaagacggccgagttcctctcccgcaacggt
atcgaggcggtgccgtaccacgcgggcctggacgcgggcacccgtgcggcccaccagtcc
cgcttcctgcgtgaggaaggcctcgtcgtggtcgcgacgatcgccttcggcatgggcatc
gacaagccggacgtgcggttcgtcgcccacctcgacctgccgaagtccgtcgagggctac
taccaggagacaggccgtgcgggccgcgacggactgccgtccacggcctggatggcctac
gggctgaacgacgtcatacaacagcggaagctgatccagggcggcgagggcgacgaggcg
ttccggcgccgggccgccgcccacctggacgcgatgctggggctgtgcgagacggcacag
tgccgccgcggccagctgctcgcctacttcggccaggacccgcagtccggcggctgcggc
aactgcgacacatgcctcgtgccgcccgacacctgggacggcacgatcgcggcgcagaag
gtgctgtccacggtgtggcgcctggagcgggagcgacgccagaagttcggtgcggtgcag
atcatcgacatcctgctggggcggcgcacggcgaaggtgatccagttcgaccacgaccag
ctgtccgtgttcggcatcggcgaggagctgaccgaaggagaatggcgcggagtcgtacgg
cagatactggcgcaggggctgctcgcggtcgagggcgagtacgggacgctggtgctgacg
gaggcgagcgggacggtgctgcggcgcgagcgggaggtgccgctgcgcaaggatccgccg
aagccgacggcatcccggtcctcggcgggctccggcgcgggctccgccaagggcgagcgc
aagccgaaggcggccgtggccgagctctcgccggaacttcagccggccttcgaggccctg
cgcgcctggcgcgccgagcaggcgcgcgagcagggcgtcccggcgtacgtcatcttccac
gacgccacgctccgggagatcgtcacggcgtggccgtcctcggtggcggagctgggcacc
atcagcggggtgggcgagaagaagctggcgacgtacggggagggcgtgctgggggcactc
gccgcgctgggcgggacacccggtgatgacacccagaagtccccgacggccgaagccgag
ccggctccggactggcccgagatggacgaggaaccggagccggaggagtggatgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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