KEGG   Streptomyces avermitilis: SAVERM_2523Help
Entry
SAVERM_2523       CDS       T00126                                 

Gene name
pnp
Definition
(GenBank) putative guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
sma  Streptomyces avermitilis
Pathway
sma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAVERM_2523 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sma03019]
    SAVERM_2523 (pnp)
   03016 Transfer RNA biogenesis [BR:sma03016]
    SAVERM_2523 (pnp)
Enzymes [BR:sma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     SAVERM_2523 (pnp)
Messenger RNA biogenesis [BR:sma03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SAVERM_2523 (pnp)
Transfer RNA biogenesis [BR:sma03016]
 Prokaryotic type
  tRNA degradation factors
   SAVERM_2523 (pnp)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: RNase_PH PNPase S1 RNase_PH_C KH_1 KH_2 DUF2017 KH_4 PCB_OB
Motif
Other DBs
NCBI-ProteinID: BAC70234
NITE: SAV2523
UniProt: Q82K80
Position
complement(3086850..3089066)
Genome map
AA seq 738 aa AA seqDB search
MENETHYAEAVIDNGSFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATTASKKPKEN
LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQV
VATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALINGQWVAFPTHTELEDA
VFDMVVAGRALEDGDVAIMMVEAEATEKTIQLVAGGAEAPTEEVVAAGLDAAKPFIKVLC
KAQADLAAKAAKPTGEFPVFLDYQDDVLEALTAAVKSELSQALTIAGKQDREAELDRVKE
IAAEKLLPQFEGREKEISAAYRSLTKSLVRERVIKDKVRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSP
KRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVP
LKAPVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGAEITIEDDGTIYIGAQVGSQAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGAKVQVEIAEIDSRGKLSL
IPVVEGEGDDEKKDDTDK
NT seq 2217 nt NT seq  +upstreamnt  +downstreamnt
gtggagaacgagacccactacgccgaggccgtcattgacaacggttccttcggcacccgc
accatccgcttcgagacgggccgcctggccaagcaggccgccggctccgccgtcgcgtac
ctggacgacgacaccatggtgctgtcggccaccaccgcctccaagaagcccaaggaaaat
ctcgacttcttccccctcacggtggacgtcgaggagcggatgtacgccgccggcaagatc
cccggcagcttcttccgccgcgagggccgtccctccgaggacgcgatcctcacctgtcgc
ctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccaggtc
gtcgcgacgatcatggcgctcaaccccgaccacctgtacgacgtcgtcgcgatcaacgcc
gcgtccgcgtccacgcagctggccggcctgcccttctccggcccgatcggcggcgtccgc
gtcgcgctgatcaacggccagtgggtcgcgttcccgacgcacaccgagctcgaggacgcc
gtcttcgacatggtcgtcgcgggccgcgccctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgagaagaccatccagttggtcgcgggcggcgccgaggcgccg
accgaggaggtcgtcgccgccggtctggacgccgcgaagcccttcatcaaggtgctctgc
aaggctcaggccgacctcgccgcgaaggccgccaagccgaccggcgagttcccggtcttc
ctcgactaccaggacgacgtcctggaggccctgaccgccgcggtcaagagcgagctctcc
caggcgctcaccatcgccggaaagcaggaccgcgaggccgagctggaccgcgtcaaggag
atcgccgccgagaagctgctcccgcagttcgagggtcgcgagaaggagatctccgccgcg
taccgctcgctgaccaagtccctggtgcgcgagcgcgtcatcaaggacaaggtccgcatc
gacggccgaggcgtcacggacatccgtacgctcgccgccgaggtcgaggccatcccgcgt
gtgcacggctcggcgctgttcgagcgtggtgagacccagatcctgggcgtcaccaccctg
aacatgctccgtatggagcagcagctggacaccctctccccggtgacccgcaagcgctac
atgcacaactacaacttcccgccgtactccgtcggcgagaccggccgcgtcggctccccg
aagcgccgcgagatcggccacggcgcgctcgccgagcgcgcgatcgtgccggtcctgccg
acgcgcgaggagttcccgtacgcgatccgtcaggtgtccgaggccctcggctccaacgga
tcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctgaacgccggtgtgccg
ctgaaggcccccgtcgccggtatcgccatgggcctgatctcccaggagatcaacggcgag
acgcactacgtcgccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaaggagttcgtgaccgccctccagctcgacaccaagctggac
ggcatcccggcctccgtcctggccgcggccctcaagcaggcccgcgacgcccgcctccac
atcctcgacgtgatgatggaagcgatcgacacgccggacgagatgtccccgaacgccccg
cggatcatcaccgtcaagatccccgtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgagatcacgatcgaggacgacggc
accatctacatcggtgcccaggtcggctcgcaggccgaggccgcccgcgccacgatcaac
ggcatcgccaacccgaccatgccggaggtcggcgagcgctacctgggcacggtcgtcaag
acgaccaccttcggtgcgttcgtgtcgctgctcccgggcaaggacggtctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtgctcggt
gtgggcgccaaggtccaggtcgagatcgccgagatcgactcccgcggcaagctctccctc
atccccgtggtcgagggcgaaggcgacgacgagaagaaggacgacaccgacaagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NITE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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