KEGG   Streptomyces avermitilis: SAVERM_7136Help
Entry
SAVERM_7136       CDS       T00126                                 

Gene name
ligB
Definition
(GenBank) putative DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sma  Streptomyces avermitilis
Pathway
sma03030  DNA replication
sma03410  Base excision repair
sma03420  Nucleotide excision repair
sma03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SAVERM_7136 (ligB)
   03410 Base excision repair
    SAVERM_7136 (ligB)
   03420 Nucleotide excision repair
    SAVERM_7136 (ligB)
   03430 Mismatch repair
    SAVERM_7136 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sma03032]
    SAVERM_7136 (ligB)
   03400 DNA repair and recombination proteins [BR:sma03400]
    SAVERM_7136 (ligB)
Enzymes [BR:sma01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SAVERM_7136 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     SAVERM_7136 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SAVERM_7136 (ligB)
DNA replication proteins [BR:sma03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    SAVERM_7136 (ligB)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     SAVERM_7136 (ligB)
DNA repair and recombination proteins [BR:sma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SAVERM_7136 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     SAVERM_7136 (ligB)
   MMR (mismatch excision repair)
    Other MMR factors
     SAVERM_7136 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: BAC74847
NITE: SAV7136
UniProt: Q826P6
Position
complement(8495569..8497107)
Genome map
AA seq 512 aa AA seqDB search
MLLSRLAHVSREVAATSARSRKIALLAELFRDADADDVPIVIPYLAGRLPQGRLGIGWKL
LGRPVTPASEPSLTVRDVDARLTAVGAVTGTGSQAGRGRLMGELMAAATDVEQAFLRGLL
TGEVRQGALDAVAVEGLAEATGAPPADVRRAVMLAGSLQTVARALLAEGPGALDGFRLTV
GRPVLPMLAHTAGSVAEAVGKLGACAVEEKLDGIRVQLHRDGDHVRIYTRTLDDITDRLP
ELTAAALELKGDRFILDGEVIALDGNGRPRSFQEIAGRVGSRVDVAAAAASVPVSPVFFD
ALSVDGRDLLDLPFTERHAELARLVPEPLRVRRALVSGPDDGAAAETFLADTLARGHEGV
VVKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARAADGSFA
MLGKTFKGMTDAMLTWQTERLTELAVEENGSVVTVRPELVVEIAYDGLQKSTRYPAGVTL
RFARVVRYREDKTPAEADTVETLLAAHPEVTR
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctgctgagccgcctcgcccatgtgtcccgggaggtcgccgccacctcggcgcggtcc
cggaagatcgcgctgctcgccgagctgttccgggacgccgacgcggacgacgtgccgatc
gtgatcccgtatctggccggacgccttccgcaggggcggctcggcatcggctggaagctc
ctcggccggccggtcacgcccgcgtcggagccgtcgctcaccgtgcgggacgtggacgcc
cggctgacagcggtcggcgccgtcacgggcaccggctcgcaggccgggcgcgggcgcctg
atgggcgagctgatggcggcggccaccgacgtcgagcaggccttcctgcgcgggctgctc
accggcgaggtgcggcagggcgcgctggacgcggtcgcggtcgaggggctggccgaggcg
accggcgcgccccccgccgacgtacgacgggcggtgatgctcgccggatcgctccagacg
gtggcgcgggcgctgctcgcggagggcccgggggccctggacggcttccggctcaccgtc
ggccgcccggtgctgccgatgctggcgcacacggcgggatccgtggccgaggccgtcggc
aagctgggcgcgtgtgccgtcgaggagaagctcgacggcatccgcgtccagctccaccgc
gacggcgaccacgtacggatctacacccgcaccctcgacgacatcaccgaccggttgccc
gaactcaccgccgccgccctggagttgaagggcgaccggttcattctggacggtgaggtc
atcgcgctggacgggaacgggcggccgcgctccttccaggagatcgccgggcgcgtgggc
tcgcgcgtggacgtggccgcggccgccgcgtcggtgcccgtctcccccgtgttcttcgac
gcgctgtccgtcgacggacgggatctgctcgacctgccgttcaccgagcggcacgcggag
ctggcccggctggtgcccgagccgctgcgcgtgcggcgcgcgctcgtgtccggtcccgac
gatggcgccgccgccgagacgttcctcgccgacacgctcgcgcgcggccacgagggcgtc
gtggtcaaagccctcgacgccccctacagcgcgggccggcgcggcgcctcctggctgaag
gtcaagcccgtgcacaccctcgacctggtggtgctcgcggccgagtggggccacgggcgg
cgcaccggcaagctgtccaacctgcacctcggggcgcgcgccgcggacgggtccttcgcg
atgctcggcaagacgttcaagggcatgaccgacgcgatgctgacctggcagaccgagcgg
ctgacggagctggccgtcgaggagaacggctccgtggtgaccgtacggccggaactcgtc
gtcgagatcgcgtacgacggtctccagaagtccacccgctacccggccggcgtcaccctc
cgcttcgcccgcgtcgtccggtaccgcgaggacaagaccccggccgaggccgacacggtc
gagaccttgctcgccgcgcacccggaggtgacccggtga

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