KEGG   Schistosoma mansoni: Smp_027970
Entry
Smp_027970        CDS       T01095                                 
Name
(RefSeq) ATP-dependent RNA helicase, putative
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
smm  Schistosoma mansoni
Pathway
smm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Smp_027970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smm03041]
    Smp_027970
Enzymes [BR:smm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     Smp_027970
Spliceosome [BR:smm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    Smp_027970
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    Smp_027970
SSDB
Motif
Pfam: Helicase_C HA2_N HA2_C DEAD AAA_19 nSTAND3 AAA_22 AAA_30 Flavi_DEAD T2SSE
Other DBs
NCBI-GeneID: 8341757
NCBI-ProteinID: XP_018644834
Position
1
AA seq 778 aa
MSSPKRRCFRQRNASESSEEDEIVESEKSGESSGFEEYEKEELTRQNDLKERDAFVKRLV
DRDQQQSKGVSSRSTSKHEEALRKITSGEVSREEMIAELRKESRRTYLRKRQSDKLADLQ
AEIQDEELFFENEELTENEKAELLYKKTILAVAKSHQQAGELENIFRYYIPTEEKRPEDH
ELKGSESKLNDEGKRWEQEHLSSALYSFGAKDKVEQEVKYDLVLDDEIEFLKTLTRPGAN
IEQEVSADEEQKRKATDRREALQEAKRSLPIYKFRDALLQAIADHQVLIIEGETGSGKTT
QIPQYLYEAGYCNGGKRIGCTQPRRVAAMSVAARVSQEMSVRLGSEVGYSIRFEDCTSEH
TVIKYMTDGMLLREFLTEPDLGSYSVMIIDEAHERTLHTDILFGLVKDVARFRSDLKLLI
SSATLDAEKFATFFDDAPVFRIPGRRYPVDIYYTKAPEADYIEAAIISILQIHVTQPPGD
ILVFLTGQEEIETANELLMERTRKLGSKIRELIILPIYSSLPSDMQAKIFAPTPPGARKV
VLATNIAETSLTIDGIIYVIDTGFCKQKFYSARSGVESLIVVPISQAAADQRAGRAGRVA
AGKCFRLYTSHAYHTELDPQPIPEIQRTNLGNVVLLLKSLGIDDLLHFDYMDPPPHDALI
MALEQLYALGALNHKGELTKMGRQMAEFPCNPQLSKMILASDKYKCSGDIITIASMLSVN
NAIFYRPKDKLIHADTARKSFSHVAGDHIMLLNVYNQWAESGMNGIDKQVFTHSSFLL
NT seq 2337 nt   +upstreamnt  +downstreamnt
atgagttcgccaaagcgacgttgtttcagacaacgaaacgcaagtgaaagcagtgaggaa
gatgaaattgttgagagtgaaaaaagtggtgagtccagtggatttgaagagtatgagaaa
gaagagttaactcgtcaaaatgatttgaaagaacgtgatgccttcgttaaacgccttgtt
gaccgggaccagcaacaaagtaaaggggtctcttctaggtccaccagtaagcacgaggaa
gctttgaggaaaataacgagtggtgaagtaagccgtgaagaaatgattgccgaactgcgc
aaagaatccaggcgaacatatctgcgaaaaagacagtctgacaaacttgcagatcttcaa
gctgaaattcaagatgaagaactgttttttgaaaacgaagaattgactgagaacgaaaag
gccgaactattatataagaaaactattttggcggttgcgaaatcccatcaacaagcagga
gaactggagaatatctttcgttattacattcccactgaagaaaagcgaccagaagatcac
gaactaaaaggatctgaaagtaaattaaatgatgaaggcaagaggtgggaacaggaacat
ctttcctcggcactttattctttcggtgccaaagacaaagttgaacaagaagtgaaatac
gatcttgttttggatgatgaaatagagtttttaaaaacactaactcgacctggtgccaac
attgaacaagaagtcagtgcagacgaagagcaaaaacgaaaagctactgacagacgtgaa
gccctccaggaagcgaaacgctctctcccgatctataaatttcgggatgctcttttacaa
gctattgctgatcatcaggttttaatcatagaaggtgaaacaggttctggtaaaacaact
caaattcctcagtatttgtacgaagcgggttattgtaatggaggaaaacgtattgggtgt
acacaaccacgtcgtgttgctgccatgtcagtagctgctcgagtttcacaagaaatgtct
gttagacttggatctgaagtgggatatagtattcgttttgaagattgtacttcagaacat
acagtaataaagtacatgacagatggtatgcttttgcgtgaatttctcacagaaccagat
ttgggcagttattcagtaatgattatagacgaagcacatgaacgtacactacatacggat
atactattcggtttagtaaaggatgtagctcgttttcgatccgatttgaaacttctaatt
agttctgctactttagatgcagaaaaatttgctacattttttgatgatgctcctgtattc
cgaatcccaggtcgtcgttatccagttgatatctactatacaaaagctccagaagctgat
tatattgaagctgctatcatatctattcttcaaatacatgtaactcaacccccaggtgat
attctagtctttttaactggtcaagaagaaattgaaaccgctaatgaattattaatggag
cgtacaagaaaacttgggagtaaaattcgtgaattaataattctacctatttattctagt
cttccatctgatatgcaggcgaaaatttttgcaccaacaccaccaggtgctcgaaaagtt
gtcttagctacaaatattgctgaaacatcacttacaatagatggtattatttatgtgatt
gatactggattttgtaaacaaaaattttatagtgcacgctctggtgttgaatcattaata
gtcgttccaatatcacaagctgcagccgatcaaagagctggacgcgctggacgtgtagcc
gcaggcaaatgttttcgtctatacacttcacatgcttatcatacagaattagatccacaa
cctattccagaaatacaacgtacaaatttaggcaatgttgtcttattacttaaatctctt
ggtattgatgatctgctacattttgattatatggatcccccaccacatgatgctttaatt
atggcattagaacaattatatgccttgggtgcattaaatcataaaggtgaactaactaaa
atgggtcgccaaatggctgaattcccatgtaatccacagttatcaaaaatgattttagct
tcagataagtataaatgttctggagatattatcactatagcatcgatgctttctgtaaat
aatgccatcttctatagaccgaaagataaattaattcatgcagatactgcacgtaaaagt
ttttctcatgtagccggtgatcatattatgctactgaatgtttataatcaatgggcggaa
tcgggtatgaacggaattgataaacaggtatttactcattcttctttcttgttatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (41)   

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