KEGG   Staphylococcus nepalensis: BJD96_08280
Entry
BJD96_08280       CDS       T05272                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
snl  Staphylococcus nepalensis
Pathway
snl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:snl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BJD96_08280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:snl03019]
    BJD96_08280
   03016 Transfer RNA biogenesis [BR:snl03016]
    BJD96_08280
Enzymes [BR:snl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     BJD96_08280
Messenger RNA biogenesis [BR:snl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BJD96_08280
Transfer RNA biogenesis [BR:snl03016]
 Prokaryotic type
  tRNA degradation factors
   BJD96_08280
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 SPATA25 S1_2
Other DBs
NCBI-ProteinID: ATH60297
UniProt: A0A291JLN0
Position
complement(1755032..1757131)
AA seq 699 aa
MSQEKKVFKTEWANRSLTIETGQLAKQANGAVLVRYGETVVLSTAVASKEPRDGDFFPLM
VNYEEKMYAAGKIPGGFKKREGRPSDEATLTARLIDRPIRPLFPKGYRYDVQIMNTVLSA
DPDCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGEYVINPTVAQKEVSRLDLEVA
GHKDAVNMVEAGASEITEDEMLEAIFFGHQEIQRLVSFQEEIIDHIQPEKKAFVPVEKDE
TLVEKVKNLTTSYGLKDAVLTFDKQQRDINLDALKEKVAAVFVDENDDENEDLIKEVYSI
LDDLVKEEVRRLIAEEKIRPDGRKTDEIRPLESEVGILPRTHGSGLFTRGQTQALSVLTL
GSMSEYQILDGLGEEEQKRFMHHYNFPNYSVGETGPVRSPGRREIGHGALGERALSHIIP
DVKDFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYT
ILTDIQGMEDALGDMDFKVAGTSEGITAIQMDIKIDGLTKEIIKEALEQARAGRLDILDH
MLQTIDTPRSELSAFAPKVVTMTIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIF
IGAVDKEAIEKARSIIEEITREAEVGEVYDGKVKRIEKYGAFVELFPGKDALVHISQIAN
ERINKVEDVLKVGDTFKIKVTEIDKQGRVNASHKALLSK
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgtctcaagagaaaaaagtttttaaaactgaatgggcaaatagatctttaacgattgaa
acgggacagcttgcaaaacaagcaaacggtgcggtacttgttagatatggtgaaacagtc
gtgttatcaactgctgtcgcctcaaaagaacctcgtgatggtgactttttcccattaatg
gttaactatgaagaaaaaatgtatgctgcaggtaaaataccaggtggctttaaaaaacgt
gaaggacgtccaagtgacgaagctacattaacagcacgtttgattgatagaccaatcaga
ccgcttttcccaaaaggttatagatatgacgtccaaattatgaatacagtattaagcgct
gatccagattgttctcctgagatggcagcgatgataggttcatcaatggcattgagtgtt
tctgatattcctttccaagggcccattgcaggcgtgaatgtaggttacgttgatggcgaa
tacgtgattaaccctacagttgcacaaaaagaagtgtctcgtcttgacttagaggttgca
ggtcataaagatgctgtaaatatggtagaagctggtgcgagtgaaatcacagaagatgaa
atgcttgaagctatcttttttggacatcaagaaattcagcgtttagttagcttccaagaa
gaaattattgatcatattcaaccagagaaaaaagcgtttgttccagttgaaaaagacgaa
acacttgttgaaaaagttaagaatttaacaacatcatatggattaaaagatgcagtgtta
acttttgataaacaacaacgtgatatcaatttagatgcacttaaggaaaaagttgcagca
gtattcgttgatgaaaatgatgacgaaaatgaagatttaatcaaagaagtttatagtatt
ttagatgacttagttaaagaagaagttagacgtctaatagcagaagagaaaattagacct
gatggtcgtaaaacggacgaaattcggcctttagaatcagaagttggtattttgccaaga
acacatggttctgggttgtttacaagaggacaaactcaagccctttcagtattaacttta
ggttcaatgagtgaataccaaatcctagatggacttggtgaagaagagcaaaaacgcttt
atgcatcactacaacttccctaattactcagttggcgagacaggtccagttcgttcacca
ggtcgtcgtgaaattggacatggtgcactaggagaacgtgcgttaagccatattattcca
gatgttaaagattttccatatacagtaagaattgtaagtgaagtattagaatcaaatggt
tcatcttctcaagcttctatctgtggttcaacattagcgttaatggatgcaggtgtgcca
attaaagcaccagttgctggtatcgctatgggattagttacacgagacgatagttatact
atattgactgatatccaaggtatggaagatgcgcttggcgatatggactttaaagtagca
ggtacatctgaaggtattactgctattcaaatggatattaaaattgacgggttaactaaa
gaaattatcaaagaagcgctagagcaagctagagcaggtcgcctagatatattagatcac
atgcttcaaacgattgatacaccacgtagcgaattaagtgctttcgcaccaaaagttgta
acaatgacaattaaaccggaaaaaattagagatgttattggacctggcggtaaaaaaatc
aatgaaattattgacgaaactggtgttaaattagatattgaacaagacggtacaatattt
attggtgcagttgataaagaagcaattgaaaaagcgcgcagtatcattgaagaaattacg
cgtgaagcagaagtgggagaagtatacgatggcaaagtaaaacgtattgaaaagtatggt
gctttcgttgaactattcccaggtaaagatgcgcttgtacacatttctcaaattgcgaat
gaacgtatcaataaagtagaagatgtgttgaaagtaggagacacatttaaaattaaagtt
acagaaattgataaacaaggtagagtaaatgcctcacataaagcattgttatctaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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