KEGG   Solanum tuberosum (potato): 102597071
Entry
102597071         CDS       T02981                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03013  Nucleocytoplasmic transport
sot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102597071
  09122 Translation
   03013 Nucleocytoplasmic transport
    102597071
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102597071
   03041 Spliceosome [BR:sot03041]
    102597071
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     102597071
Spliceosome [BR:sot03041]
 Complex C
  Other components
   EJC/TREX
    102597071
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102597071
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 eIF2A NBCH_WD40 Nup160 MMS1_N
Other DBs
NCBI-GeneID: 102597071
NCBI-ProteinID: XP_006346089
UniProt: M1C059
Position
Un
AA seq 313 aa
MAETIPFKNLHSREYQGHKKKVHSVAWNCSGTKLASGSVDQTARIWQIEPHGHGKVKDVE
LKGHTDSVDQLCWDPKHAELIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGT
HIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTGGDMFFLTTGNGTVEVLAYPSL
QAVNTLNAHTAGCYCIAIDPLGRYFAVGSADSLVSLWSIKEMLCLRTFTKLEWPVRTISF
NHTGDYIASASEDLFIDIAYVQTGRSVHQIPCRAAMNSVEWNPKQNLLAFAGDDKNKYQA
DEGVFRIFGFESA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggcggaaacaatacccttcaaaaacctccatagcagagagtaccagggacacaagaag
aaggtgcattcggtggcatggaactgcagtggcacgaaattagcttcaggttctgtggat
caaacagctcgtatttggcaaattgagcctcatggtcatggaaaggtaaaagatgttgaa
ttaaagggtcacaccgacagtgtggaccagttatgttgggatccaaaacatgcagaattg
atagctacagcatctggtgacaagacagttcgattatgggatgcccgtagtgggaaatgc
tcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggaca
catatagctgttgggaacagggatgatgagctaacaatattggatgttcgcaagtttaag
cctattcataagcgcaaatttaattatgaggtaaatgagattgcatggaacacaggtggc
gatatgttctttcttacaaccggaaatggaactgtggaagtcttagcttatccgtctcta
caagccgttaacacgcttaatgctcacactgctggttgttactgcattgcaattgatcca
ctaggaagatattttgctgttggaagtgctgattcattggtcagcctctggagcattaag
gagatgctatgtcttcgaacatttacaaaacttgagtggccagttcggacaataagtttc
aatcacacaggagactacattgcctctgctagtgaagatttgtttattgatattgcatat
gtccaaactggacggtcagttcaccagattccatgtcgtgctgccatgaacagtgttgaa
tggaatccaaaacagaacttgcttgcctttgctggggatgataagaacaaataccaggct
gatgaaggtgtgtttcgcatatttggctttgagagtgcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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